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PMID: 8284205 Published · ppublish English Journal Article

C-terminal domain (CTD) of RNA-polymerase II and N-terminal segment of the human TATA binding protein (TBP) can mediate remote and proximal transcriptional activation, respectively.

Nucleic acids research ·Vol. 21 ·No. 24 ·1993-12-11 ·Pages 5609-15

Seipel K, Georgiev O, Gerber HP, Schaffner W

Abstract

Activation domains of mammalian transcription factors can be subdivided into at least two functional classes. One, exemplified by the glutamine-rich activation domains of Oct and Sp1 factors, mediates transcriptional activation only from a proximal promoter position, and in response to an enhancer. The other, exemplified by the 'acidic' domain of the viral activator VP16, has the ability to activate from remote enhancer as well as from proximal promoter positions. Here we report that two proteins of the basal transcription apparatus also contain activation domains whose stimulatory effect can be detected in fusion proteins containing the GAL4 DNA binding domain. The human TATA-binding protein (TBP) contains at its N-terminus a domain with typical 'promoter' activity. We propose that the TBP N-terminal region acts as an auxiliary activation domain which reinforces the activity of other promoter-bound factors. The largest subunit of RNA polymerase II contains at its C-terminus a conserved heptad repeat structure (CTD). Both natural and synthetic CTD consensus repeats fused to GAL4 can activate transcription from remote positions like a typical enhancer-active domain. Accordingly we propose that the RNA polymerase II large subunit contains a 'portable' domain for transcriptional activation which may synergize with the activation domains of enhancer-bound transcription factors.

MeSH Terms
Amino Acid Sequence Base Sequence Consensus Sequence DNA DNA-Binding Proteins/chemistry,metabolism HeLa Cells Humans Molecular Sequence Data RNA Polymerase II/chemistry,metabolism Repetitive Sequences, Nucleic Acid TATA-Box Binding Protein Transcription Factors/chemistry,metabolism Transcriptional Activation Transfection
Chemicals
DNA-Binding Proteins TATA-Box Binding Protein Transcription Factors DNA RNA Polymerase II
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Seipel K
Institut für Molekularbiologie II, Universität Zürich, Switzerland.
Georgiev O
Gerber H P
Schaffner W
References (54)
54 references, click to expand
  1. Mutations in RNA polymerase II enhance or suppress mutations in GAL4.
    Proc Natl Acad Sci U S A. 1989 Apr;86(8):2794-8 PMID: 2495535
  2. A multisubunit complex associated with the RNA polymerase II CTD and TATA-binding protein in yeast.
    Cell. 1993 Jul 2;73(7):1361-75 PMID: 8324825
  3. Rapid detection of octamer binding proteins with 'mini-extracts', prepared from a small number of cells.
    Nucleic Acids Res. 1989 Aug 11;17(15):6419 PMID: 2771659
  4. Eukaryotic transcriptional regulatory proteins.
    Annu Rev Biochem. 1989;58:799-839 PMID: 2673023
  5. The C-terminal domain of the largest subunit of RNA polymerase II and transcription initiation.
    Mol Cell Biol. 1989 Dec;9(12):5750-3 PMID: 2685576
  6. The heptad repeat in the largest subunit of RNA polymerase II binds by intercalating into DNA.
    Nature. 1990 Apr 5;344(6266):562-5 PMID: 2181321
  7. Direct and selective binding of an acidic transcriptional activation domain to the TATA-box factor TFIID.
    Nature. 1990 Jun 28;345(6278):783-6 PMID: 2193231
  8. Functional domains and upstream activation properties of cloned human TATA binding protein.
    Science. 1990 Jun 29;248(4963):1625-30 PMID: 2363050
  9. Mechanism of transcriptional activation by Sp1: evidence for coactivators.
    Cell. 1990 Jun 29;61(7):1187-97 PMID: 2194667
  10. A novel mediator between activator proteins and the RNA polymerase II transcription apparatus.
    Cell. 1990 Jun 29;61(7):1209-15 PMID: 2163759
  11. Highly conserved core domain and unique N terminus with presumptive regulatory motifs in a human TATA factor (TFIID).
    Nature. 1990 Jul 26;346(6282):387-90 PMID: 2374612
  12. RNA polymerase II C-terminal repeat influences response to transcriptional enhancer signals.
    Nature. 1990 Oct 4;347(6292):491-4 PMID: 2215664
  13. Tails of RNA polymerase II.
    Trends Biochem Sci. 1990 Oct;15(10):383-7 PMID: 2251729
  14. Identification of phosphorylation sites in the repetitive carboxyl-terminal domain of the mouse RNA polymerase II largest subunit.
    J Biol Chem. 1991 Feb 5;266(4):2290-6 PMID: 1899239
  15. Extensive homology among the largest subunits of eukaryotic and prokaryotic RNA polymerases.
    Cell. 1985 Sep;42(2):599-610 PMID: 3896517
  16. A unique structure at the carboxyl terminus of the largest subunit of eukaryotic RNA polymerase II.
    Proc Natl Acad Sci U S A. 1985 Dec;82(23):7934-8 PMID: 2999785
  17. Cell type-specificity elements of the immunoglobulin heavy chain gene enhancer.
    EMBO J. 1987 May;6(5):1323-30 PMID: 3038516
  18. Cloning and sequence analysis of the mouse genomic locus encoding the largest subunit of RNA polymerase II.
    J Biol Chem. 1987 Aug 5;262(22):10695-705 PMID: 3038894
  19. Functional redundancy and structural polymorphism in the large subunit of RNA polymerase II.
    Cell. 1987 Sep 11;50(6):909-15 PMID: 3304659
  20. Messenger RNA synthesis in mammalian cells is catalyzed by the phosphorylated form of RNA polymerase II.
    J Biol Chem. 1987 Sep 15;262(26):12468-74 PMID: 3624268
  21. OVEC, a versatile system to study transcription in mammalian cells and cell-free extracts.
    Nucleic Acids Res. 1987 Sep 11;15(17):6787-98 PMID: 3658668
  22. The C-terminal domain of the largest subunit of RNA polymerase II of Saccharomyces cerevisiae, Drosophila melanogaster, and mammals: a conserved structure with an essential function.
    Mol Cell Biol. 1988 Jan;8(1):321-9 PMID: 3122024
  23. Genetic analysis of the repetitive carboxyl-terminal domain of the largest subunit of mouse RNA polymerase II.
    Mol Cell Biol. 1988 Jan;8(1):330-9 PMID: 3275873
  24. Transcriptional activation. Acid blobs and negative noodles.
    Nature. 1988 May 19;333(6170):210-2 PMID: 3367995
  25. The C-terminal repeat domain of RNA polymerase II largest subunit is essential in vivo but is not required for accurate transcription initiation in vitro.
    Proc Natl Acad Sci U S A. 1988 Jun;85(11):3698-702 PMID: 3131761
  26. Heavy metal ions in transcription factors from HeLa cells: Sp1, but not octamer transcription factor requires zinc for DNA binding and for activator function.
    Nucleic Acids Res. 1988 Jul 11;16(13):5771-81 PMID: 3135532
  27. Activation domains of stably bound GAL4 derivatives alleviate repression of promoters by nucleosomes.
    Cell. 1991 Feb 8;64(3):533-44 PMID: 1991320
  28. Sequence-specific antirepression of histone H1-mediated inhibition of basal RNA polymerase II transcription.
    Science. 1991 Feb 8;251(4994):643-9 PMID: 1899487
  29. Mechanism of action of an acidic transcriptional activator in vitro.
    Cell. 1991 Mar 8;64(5):971-81 PMID: 2001592
  30. A functional interaction between the C-terminal domain of RNA polymerase II and the negative regulator SIN1.
    Cell. 1991 Mar 22;64(6):1135-43 PMID: 2004420
  31. A highly conserved domain of TFIID displays species specificity in vivo.
    Cell. 1991 Apr 19;65(2):333-40 PMID: 2015627
  32. Reduced binding of TFIID to transcriptionally compromised mutants of VP16.
    Nature. 1991 Jun 13;351(6327):588-90 PMID: 1646402
  33. Direct interaction between adenovirus E1A protein and the TATA box binding transcription factor IID.
    Proc Natl Acad Sci U S A. 1991 Jun 15;88(12):5124-8 PMID: 1828892
  34. Facilitated binding of GAL4 and heat shock factor to nucleosomal templates: differential function of DNA-binding domains.
    Genes Dev. 1991 Jul;5(7):1285-98 PMID: 2065977
  35. Striking homology of the 'variable' N-terminal as well as the 'conserved core' domains of the mouse and human TATA-factors (TFIID).
    Nucleic Acids Res. 1991 Jul 25;19(14):3861-5 PMID: 1861978
  36. RNA polymerase II.
    Annu Rev Biochem. 1991;60:689-715 PMID: 1883205
  37. Roles of TFIID in transcriptional initiation by RNA polymerase II.
    Cell. 1991 Sep 20;66(6):1067-70 PMID: 1913802
  38. RNA polymerase II carboxy-terminal domain contributes to the response to multiple acidic activators in vitro.
    Genes Dev. 1991 Dec;5(12B):2431-40 PMID: 1752437
  39. Chromatin as an essential part of the transcriptional mechanism.
    Nature. 1992 Jan 16;355(6357):219-24 PMID: 1731219
  40. DNA binding provides a signal for phosphorylation of the RNA polymerase II heptapeptide repeats.
    Genes Dev. 1992 Mar;6(3):426-38 PMID: 1547941
  41. Specific interaction between the nonphosphorylated form of RNA polymerase II and the TATA-binding protein.
    Cell. 1992 May 29;69(5):871-81 PMID: 1591781
  42. The basic RNA polymerase II transcriptional machinery.
    Gene Expr. 1992;2(2):81-91 PMID: 1633439
  43. The TATA-binding protein: a central role in transcription by RNA polymerases I, II and III.
    Trends Genet. 1992 Aug;8(8):284-8 PMID: 1509519
  44. Threshold phenomena and long-distance activation of transcription by RNA polymerase II.
    Science. 1992 Sep 18;257(5077):1682-5 PMID: 1388287
  45. Transcription. Riding high on the TATA box.
    Nature. 1992 Nov 5;360(6399):16-7 PMID: 1436067
  46. Crystal structure of TFIID TATA-box binding protein.
    Nature. 1992 Nov 5;360(6399):40-6 PMID: 1436073
  47. Mechanism of transcriptional antirepression by GAL4-VP16.
    Genes Dev. 1992 Dec;6(12A):2270-81 PMID: 1459451
  48. Initiation on chromatin templates in a yeast RNA polymerase II transcription system.
    Genes Dev. 1992 Dec;6(12A):2282-7 PMID: 1459452
  49. Different activation domains stimulate transcription from remote ('enhancer') and proximal ('promoter') positions.
    EMBO J. 1992 Dec;11(13):4961-8 PMID: 1464321
  50. Molecular cloning and functional analysis of Drosophila TAF110 reveal properties expected of coactivators.
    Cell. 1993 Jan 29;72(2):247-60 PMID: 7678780
  51. Nucleosome displacement in transcription.
    Cell. 1993 Feb 12;72(3):305-8 PMID: 8431942
  52. Initiation of transcription by RNA polymerase II: a multi-step process.
    Prog Nucleic Acid Res Mol Biol. 1993;44:67-108 PMID: 8434126
  53. Factors (TAFs) required for activated transcription interact with TATA box-binding protein conserved core domain.
    Genes Dev. 1993 Feb;7(2):180-7 PMID: 8436290
  54. Transcriptional regulation in mammalian cells by sequence-specific DNA binding proteins.
    Science. 1989 Jul 28;245(4916):371-8 PMID: 2667136
Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
0305-1048
Published
1993-12-11
Pages
5609-15
Language
English
Region
England
NLM ID
0411011
PMCID
PMC310524
Subset
IM
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