Home LiteratureArticle Details
PMID: 8097277 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, P.H.S.

Primer-DNA formation during simian virus 40 DNA replication in vitro.

Molecular and cellular biology ·Vol. 13 ·No. 5 ·1993-05-00 ·Pages 2882-90

Denis D, Bullock PA

Abstract

Studies of simian virus 40 (SV40) DNA replication in vitro have identified a small (approximately 30-nucleotide) RNA-DNA hybrid species termed primer-DNA. Initial experiments indicated that T antigen and the polymerase alpha-primase complex are required to form primer-DNA. Proliferating cell nuclear antigen, and presumably proliferating cell nuclear antigen-dependent polymerases, is not needed to form this species. Herein, we present an investigation of the stages at which primer-DNA functions during SV40 DNA replication in vitro. Hybridization studies indicate that primer-DNA is initially formed in the origin region and is subsequently synthesized in regions distal to the origin. At all time points, primer-DNA is synthesized from templates for lagging-strand DNA replication. These studies indicate that primer-DNA functions during both initiation and elongation stages of SV40 DNA synthesis. Results of additional experiments suggesting a precursor-product relationship between formation of primer-DNA and Okazaki fragments are presented.

MeSH Terms
Antigens, Neoplasm/metabolism Antigens, Polyomavirus Transforming/metabolism Base Sequence Cell-Free System DNA Primase DNA Replication DNA, Viral/biosynthesis,isolation & purification HeLa Cells Humans Molecular Sequence Data Nuclear Proteins/metabolism Oligodeoxyribonucleotides Proliferating Cell Nuclear Antigen RNA Nucleotidyltransferases/metabolism Restriction Mapping Simian virus 40/genetics Templates, Genetic
Chemicals
Antigens, Neoplasm Antigens, Polyomavirus Transforming DNA, Viral Nuclear Proteins Oligodeoxyribonucleotides Proliferating Cell Nuclear Antigen DNA Primase RNA Nucleotidyltransferases
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Denis D
Department of Biochemistry, Tufts University School of Medicine, Boston, Massachusetts 02111.
Bullock P A
References (54)
54 references, click to expand
  1. Exonucleolytic proofreading of leading and lagging strand DNA replication errors.
    Proc Natl Acad Sci U S A. 1991 Apr 15;88(8):3465-9 PMID: 1901658
  2. Initiation of simian virus 40 DNA synthesis in vitro.
    Mol Cell Biol. 1991 May;11(5):2350-61 PMID: 1673224
  3. How many pols does it take to replicate nuclear DNA?
    Cell. 1991 Jul 26;66(2):185-7 PMID: 1855251
  4. Eukaryotic DNA polymerases.
    Annu Rev Biochem. 1991;60:513-52 PMID: 1883203
  5. Synthesis of DNA by DNA polymerase epsilon in vitro.
    J Biol Chem. 1991 Nov 25;266(33):22707-17 PMID: 1682323
  6. Fidelity of mammalian DNA replication and replicative DNA polymerases.
    Biochemistry. 1991 Dec 24;30(51):11751-9 PMID: 1751492
  7. Studies on the initiation of simian virus 40 replication in vitro: RNA primer synthesis and its elongation.
    Proc Natl Acad Sci U S A. 1992 Feb 1;89(3):952-6 PMID: 1310541
  8. Interaction of DNA polymerase alpha-primase with cellular replication protein A and SV40 T antigen.
    EMBO J. 1992 Feb;11(2):769-76 PMID: 1311258
  9. The replication of DNA containing the simian virus 40 origin by the monopolymerase and dipolymerase systems.
    J Biol Chem. 1992 Apr 15;267(11):7284-94 PMID: 1348504
  10. HeLa cell single-stranded DNA-binding protein increases the accuracy of DNA synthesis by DNA polymerase alpha in vitro.
    Mutat Res. 1992 Jun;274(1):29-43 PMID: 1375330
  11. Structure and function of simian virus 40 large tumor antigen.
    Annu Rev Biochem. 1992;61:55-85 PMID: 1323237
  12. The in vitro replication of DNA containing the SV40 origin.
    J Biol Chem. 1990 Oct 25;265(30):18043-6 PMID: 1976634
  13. Two DNA polymerases may be required for synthesis of the lagging DNA strand of simian virus 40.
    J Virol. 1990 Dec;64(12):5912-8 PMID: 2173773
  14. Reconstitution of simian virus 40 DNA replication with purified proteins.
    Proc Natl Acad Sci U S A. 1990 Nov;87(22):8692-6 PMID: 2174160
  15. Studies on the initiation and elongation reactions in the simian virus 40 DNA replication system.
    Proc Natl Acad Sci U S A. 1990 Dec;87(24):9712-6 PMID: 2175912
  16. Replication factors required for SV40 DNA replication in vitro. II. Switching of DNA polymerase alpha and delta during initiation of leading and lagging strand synthesis.
    J Biol Chem. 1991 Jan 25;266(3):1961-8 PMID: 1671046
  17. Properties of DNA polymerases delta and epsilon, and their roles in eukaryotic DNA replication.
    Biochim Biophys Acta. 1991 Jan 17;1088(1):11-24 PMID: 1846563
  18. Influence of poly(ADP-ribose) polymerase on the enzymatic synthesis of SV40 DNA.
    J Biol Chem. 1991 Feb 15;266(5):3087-100 PMID: 1671570
  19. Effects of T antigen and replication protein A on the initiation of DNA synthesis by DNA polymerase alpha-primase.
    Mol Cell Biol. 1991 Apr;11(4):2108-15 PMID: 1848671
  20. Replication and supercoiling of simian virus 40 DNA in cell extracts from human cells.
    Mol Cell Biol. 1985 Aug;5(8):2051-60 PMID: 3018548
  21. DNA helicase activity of SV40 large tumor antigen.
    EMBO J. 1986 Aug;5(8):1939-44 PMID: 3019672
  22. T-antigen-DNA polymerase alpha complex implicated in simian virus 40 DNA replication.
    Mol Cell Biol. 1986 Nov;6(11):4077-87 PMID: 3025630
  23. Simian virus 40 (SV40) DNA replication: SV40 large T antigen unwinds DNA containing the SV40 origin of replication.
    Proc Natl Acad Sci U S A. 1987 Jan;84(1):16-20 PMID: 3025851
  24. The cell-cycle regulated proliferating cell nuclear antigen is required for SV40 DNA replication in vitro.
    Nature. 1987 Apr 2-8;326(6112):471-5 PMID: 2882422
  25. Initiation of simian virus 40 DNA replication in vitro: large-tumor-antigen- and origin-dependent unwinding of the template.
    Proc Natl Acad Sci U S A. 1987 Jun;84(11):3643-7 PMID: 3035543
  26. Processivity of the DNA polymerase alpha-primase complex from calf thymus.
    Biochemistry. 1987 May 19;26(10):2870-8 PMID: 3606995
  27. p53 and DNA polymerase alpha compete for binding to SV40 T antigen.
    Nature. 1987 Oct 1-7;329(6138):456-8 PMID: 3309672
  28. Unwinding of duplex DNA from the SV40 origin of replication by T antigen.
    Science. 1987 Nov 13;238(4829):964-7 PMID: 2823389
  29. Identification of multiple cellular factors required for SV40 replication in vitro.
    Philos Trans R Soc Lond B Biol Sci. 1987 Dec 15;317(1187):495-505 PMID: 2894684
  30. Coordinated leading and lagging strand synthesis during SV40 DNA replication in vitro requires PCNA.
    Cell. 1988 Apr 8;53(1):117-26 PMID: 2894900
  31. Exonucleolytic proofreading.
    Cell. 1988 Jun 17;53(6):837-40 PMID: 2838173
  32. An Okazaki piece of simian virus 40 may be synthesized by ligation of shorter precursor chains.
    J Virol. 1988 Aug;62(8):2867-73 PMID: 2455822
  33. Expression and complex formation of simian virus 40 large T antigen and mouse p53 in insect cells.
    J Virol. 1988 Sep;62(9):3109-19 PMID: 2457111
  34. Localized melting and structural changes in the SV40 origin of replication induced by T-antigen.
    EMBO J. 1988 Oct;7(10):3149-58 PMID: 2846276
  35. Complete enzymatic synthesis of DNA containing the SV40 origin of replication.
    J Biol Chem. 1988 Dec 25;263(36):19723-33 PMID: 2848839
  36. ATP-dependent assembly of double hexamers of SV40 T antigen at the viral origin of DNA replication.
    Nature. 1989 Apr 20;338(6217):658-62 PMID: 2539565
  37. Initiation of simian virus 40 DNA replication in vitro: pulse-chase experiments identify the first labeled species as topologically unwound.
    Proc Natl Acad Sci U S A. 1989 Jun;86(11):3944-8 PMID: 2542958
  38. DNA polymerases delta and epsilon are required for chromosomal replication in Saccharomyces cerevisiae.
    Mol Cell Biol. 1993 Jan;13(1):496-505 PMID: 8417347
  39. Eukaryotic DNA polymerases alpha and delta: conserved properties and interactions, from yeast to mammalian cells.
    Prog Nucleic Acid Res Mol Biol. 1989;37:235-80 PMID: 2505329
  40. Replication of polyoma DNA in isolated nuclei. Synthesis and distribution of initiator RNA.
    J Biol Chem. 1978 Oct 25;253(20):7469-75 PMID: 212425
  41. Processiveness of DNA polymerases. A comparative study using a simple procedure.
    J Biol Chem. 1979 Feb 25;254(4):1227-32 PMID: 368069
  42. Enzymological characterization of DNA polymerase alpha. Basic catalytic properties processivity, and gap utilization of the homogeneous enzyme from human KB cells.
    J Biol Chem. 1979 Jul 10;254(13):6128-37 PMID: 447699
  43. Elongation of RNA-primed DNA templates by DNA polymerase alpha from Drosophila melanogaster embryos.
    J Biol Chem. 1981 Aug 10;256(15):8202-7 PMID: 6790535
  44. Further studies on calf thymus DNA polymerase delta purified to homogeneity by a new procedure.
    Biochemistry. 1984 Apr 24;23(9):1906-13 PMID: 6426510
  45. Simian virus 40 DNA replication in vitro.
    Proc Natl Acad Sci U S A. 1984 Nov;81(22):6973-7 PMID: 6095264
  46. In vitro replication of duplex circular DNA containing the simian virus 40 DNA origin site.
    Proc Natl Acad Sci U S A. 1985 Sep;82(17):5710-4 PMID: 2994044
  47. Simian virus 40 DNA replication in vitro: study of events preceding elongation of chains.
    Proc Natl Acad Sci U S A. 1986 Jul;83(13):4612-6 PMID: 2425351
  48. Animal virus DNA replication.
    Annu Rev Biochem. 1989;58:671-717 PMID: 2549858
  49. Synthesis of DNA containing the simian virus 40 origin of replication by the combined action of DNA polymerases alpha and delta.
    Proc Natl Acad Sci U S A. 1989 Oct;86(19):7361-5 PMID: 2571990
  50. Initiation of eukaryotic DNA replication in vitro.
    Annu Rev Cell Biol. 1989;5:197-245 PMID: 2557059
  51. Binding and unwinding--how T antigen engages the SV40 origin of DNA replication.
    Cell. 1990 Jan 26;60(2):181-4 PMID: 2153460
  52. Sequential initiation of lagging and leading strand synthesis by two different polymerase complexes at the SV40 DNA replication origin.
    Nature. 1990 Aug 9;346(6284):534-9 PMID: 2165567
  53. DNA polymerases alpha, delta, and epsilon: three distinct enzymes from HeLa cells.
    Proc Natl Acad Sci U S A. 1990 Sep;87(17):6664-8 PMID: 1975694
  54. A third essential DNA polymerase in S. cerevisiae.
    Cell. 1990 Sep 21;62(6):1143-51 PMID: 2169349
Article Info
Journal
Molecular and cellular biology
Abbr.
Mol Cell Biol
ISSN
0270-7306
Published
1993-05-00
Pages
2882-90
Language
English
Region
United States
NLM ID
8109087
PMCID
PMC359681
Subset
IM
Grants
NIAID NIH HHS · R01 AI30032 · United States
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com