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PMID: 7935466 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, P.H.S.

A highly conserved domain of RNA polymerase II shares a functional element with acidic activation domains of upstream transcription factors.

Molecular and cellular biology ·Vol. 14 ·No. 11 ·1994-11-00 ·Pages 7507-16

Xiao H, Friesen JD, Lis JT

Abstract

We report here that the largest subunit of yeast RNA polymerase II contains an acidic domain that is similar to acidic activators of transcription. This domain includes the highly conserved homology box H. A hybrid protein containing this acidic domain fused to the DNA-binding domain of GAL4 is a potent activator of transcription in the yeast Saccharomyces cerevisiae. Interestingly, mutations that reduce the upstream activating activity of this acidic domain also abolish the normal function of RNA polymerase II. Such functional defects can be rescued by the acidic activation domains of VP16 and GAL4 when inserted into the mutant derivatives of RNA polymerase II. We further show that this acidic domain of RNA polymerase II interacts directly with two general transcription factors, the TATA-binding protein and TFIIB, and that the acidic activation domain of VP16 can compete specifically with the acidic domain of the RNA polymerase for these interactions. We discuss the implications of this finding for the mechanisms of transcriptional activation in eucaryotes.

MeSH Terms
Amino Acid Sequence Base Sequence Conserved Sequence DNA, Fungal/genetics DNA-Binding Proteins/metabolism Fungal Proteins/genetics,metabolism Models, Biological Molecular Sequence Data Protein Conformation RNA Polymerase II/chemistry,genetics,metabolism Recombinant Fusion Proteins/genetics,metabolism Saccharomyces cerevisiae/genetics,metabolism Saccharomyces cerevisiae Proteins Sequence Homology, Amino Acid TATA-Box Binding Protein Transcription Factor TFIIB Transcription Factors/genetics,metabolism Transcriptional Activation
Chemicals
DNA, Fungal DNA-Binding Proteins Fungal Proteins GAL4 protein, S cerevisiae Recombinant Fusion Proteins Saccharomyces cerevisiae Proteins TATA-Box Binding Protein Transcription Factor TFIIB Transcription Factors RNA Polymerase II
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Xiao H
Department of Genetics, Hospital for Sick Children, University of Toronto, Ontario, Canada.
Friesen J D
Lis J T
References (68)
68 references, click to expand
  1. In vivo transcriptional pausing and cap formation on three Drosophila heat shock genes.
    Proc Natl Acad Sci U S A. 1993 Sep 1;90(17):7923-7 PMID: 8367444
  2. Eukaryotic activators function during multiple steps of preinitiation complex assembly.
    Nature. 1993 Dec 9;366(6455):531-6 PMID: 8255291
  3. C-terminal domain (CTD) of RNA-polymerase II and N-terminal segment of the human TATA binding protein (TBP) can mediate remote and proximal transcriptional activation, respectively.
    Nucleic Acids Res. 1993 Dec 11;21(24):5609-15 PMID: 8284205
  4. CTD-like sequences are important for transcriptional activation by the proline-rich activation domain of CTF1.
    Nucleic Acids Res. 1994 Jan 25;22(2):251 PMID: 8121811
  5. A multiprotein mediator of transcriptional activation and its interaction with the C-terminal repeat domain of RNA polymerase II.
    Cell. 1994 May 20;77(4):599-608 PMID: 8187178
  6. Phosphorylation of RNA polymerase II C-terminal domain and transcriptional elongation.
    Nature. 1994 Jul 7;370(6484):75-7 PMID: 8015613
  7. The upstream activator CTF/NF1 and RNA polymerase II share a common element involved in transcriptional activation.
    Nucleic Acids Res. 1994 Jun 11;22(11):1966-73 PMID: 8029001
  8. Intragenic and extragenic suppressors of mutations in the heptapeptide repeat domain of Saccharomyces cerevisiae RNA polymerase II.
    Genetics. 1989 Dec;123(4):715-24 PMID: 2693207
  9. Direct and selective binding of an acidic transcriptional activation domain to the TATA-box factor TFIID.
    Nature. 1990 Jun 28;345(6278):783-6 PMID: 2193231
  10. RNA polymerase B (II) and general transcription factors.
    Annu Rev Biochem. 1990;59:711-54 PMID: 2197989
  11. Phosphorylation of RNA polymerase IIA occurs subsequent to interaction with the promoter and before the initiation of transcription.
    J Biol Chem. 1990 Aug 5;265(22):13165-73 PMID: 2376591
  12. Purification and subunit structure of deoxyribonucleic acid-dependent ribonucleic acid polymerase II from the mouse plasmacytoma, MOPC 315.
    J Biol Chem. 1975 May 10;250(9):3221-8 PMID: 1168191
  13. Fusion of Escherichia coli lacZ to the cytochrome c gene of Saccharomyces cerevisiae.
    Proc Natl Acad Sci U S A. 1981 Apr;78(4):2199-203 PMID: 6264467
  14. Primary structure of the Saccharomyces cerevisiae GAL4 gene.
    Mol Cell Biol. 1984 Feb;4(2):260-7 PMID: 6366516
  15. Extensive homology among the largest subunits of eukaryotic and prokaryotic RNA polymerases.
    Cell. 1985 Sep;42(2):599-610 PMID: 3896517
  16. Functional dissection of a eukaryotic transcriptional activator protein, GCN4 of yeast.
    Cell. 1986 Sep 12;46(6):885-94 PMID: 3530496
  17. Immunochemical analysis of mammalian RNA polymerase II subspecies. Stability and relative in vivo concentration.
    J Biol Chem. 1986 Oct 25;261(30):14219-25 PMID: 3095316
  18. Proteins that bind to RNA polymerase II are required for accurate initiation of transcription at the adenovirus 2 major late promoter.
    EMBO J. 1986 Nov;5(11):2923-30 PMID: 3792304
  19. Deletion analysis of GAL4 defines two transcriptional activating segments.
    Cell. 1987 Mar 13;48(5):847-53 PMID: 3028647
  20. An RNA polymerase II holoenzyme responsive to activators.
    Nature. 1994 Mar 31;368(6470):466-9 PMID: 8133894
  21. The basics of basal transcription by RNA polymerase II.
    Cell. 1994 Apr 8;77(1):1-3 PMID: 8156586
  22. Transcriptional activation: a complex puzzle with few easy pieces.
    Cell. 1994 Apr 8;77(1):5-8 PMID: 8156597
  23. Effects of activation-defective TBP mutations on transcription initiation in yeast.
    Nature. 1994 May 19;369(6477):252-5 PMID: 8183347
  24. A germline transformation analysis reveals flexibility in the organization of heat shock consensus elements.
    Nucleic Acids Res. 1987 Apr 10;15(7):2971-88 PMID: 3562243
  25. Cloning and sequence analysis of the mouse genomic locus encoding the largest subunit of RNA polymerase II.
    J Biol Chem. 1987 Aug 5;262(22):10695-705 PMID: 3038894
  26. Functional redundancy and structural polymorphism in the large subunit of RNA polymerase II.
    Cell. 1987 Sep 11;50(6):909-15 PMID: 3304659
  27. Messenger RNA synthesis in mammalian cells is catalyzed by the phosphorylated form of RNA polymerase II.
    J Biol Chem. 1987 Sep 15;262(26):12468-74 PMID: 3624268
  28. Mutants of GAL4 protein altered in an activation function.
    Cell. 1987 Oct 9;51(1):121-6 PMID: 3115592
  29. The C-terminal domain of the largest subunit of RNA polymerase II of Saccharomyces cerevisiae, Drosophila melanogaster, and mammals: a conserved structure with an essential function.
    Mol Cell Biol. 1988 Jan;8(1):321-9 PMID: 3122024
  30. Genetic analysis of the repetitive carboxyl-terminal domain of the largest subunit of mouse RNA polymerase II.
    Mol Cell Biol. 1988 Jan;8(1):330-9 PMID: 3275873
  31. Structural and functional characterization of the short acidic transcriptional activation region of yeast GCN4 protein.
    Nature. 1988 Jun 16;333(6174):635-40 PMID: 3287180
  32. The C-terminal repeat domain of RNA polymerase II largest subunit is essential in vivo but is not required for accurate transcription initiation in vitro.
    Proc Natl Acad Sci U S A. 1988 Jun;85(11):3698-702 PMID: 3131761
  33. The RNA polymerase II molecule at the 5' end of the uninduced hsp70 gene of D. melanogaster is transcriptionally engaged.
    Cell. 1988 Sep 9;54(6):795-804 PMID: 3136931
  34. Functional dissection of VP16, the trans-activator of herpes simplex virus immediate early gene expression.
    Genes Dev. 1988 Jun;2(6):718-29 PMID: 2843425
  35. Five intermediate complexes in transcription initiation by RNA polymerase II.
    Cell. 1989 Feb 24;56(4):549-61 PMID: 2917366
  36. Analysis of the gene encoding the largest subunit of RNA polymerase II in Drosophila.
    Mol Gen Genet. 1989 Jan;215(2):266-75 PMID: 2496296
  37. The transition of RNA polymerase II from initiation to elongation is associated with phosphorylation of the carboxyl-terminal domain of subunit IIa.
    J Biol Chem. 1989 Nov 25;264(33):19621-9 PMID: 2584185
  38. Molecular cloning and sequencing of ama-1, the gene encoding the largest subunit of Caenorhabditis elegans RNA polymerase II.
    Mol Cell Biol. 1989 Oct;9(10):4119-30 PMID: 2586513
  39. RNA polymerase II C-terminal repeat influences response to transcriptional enhancer signals.
    Nature. 1990 Oct 4;347(6292):491-4 PMID: 2215664
  40. Tails of RNA polymerase II.
    Trends Biochem Sci. 1990 Oct;15(10):383-7 PMID: 2251729
  41. Critical structural elements of the VP16 transcriptional activation domain.
    Science. 1991 Jan 4;251(4989):87-90 PMID: 1846049
  42. Activation domains of stably bound GAL4 derivatives alleviate repression of promoters by nucleosomes.
    Cell. 1991 Feb 8;64(3):533-44 PMID: 1991320
  43. Mechanism of action of an acidic transcriptional activator in vitro.
    Cell. 1991 Mar 8;64(5):971-81 PMID: 2001592
  44. Promoter-dependent phosphorylation of RNA polymerase II by a template-bound kinase. Association with transcriptional initiation.
    J Biol Chem. 1991 May 5;266(13):8055-61 PMID: 1708770
  45. Reduced binding of TFIID to transcriptionally compromised mutants of VP16.
    Nature. 1991 Jun 13;351(6327):588-90 PMID: 1646402
  46. RNA polymerase II.
    Annu Rev Biochem. 1991;60:689-715 PMID: 1883205
  47. RNA polymerase II pauses at the 5' end of the transcriptionally induced Drosophila hsp70 gene.
    Mol Cell Biol. 1991 Oct;11(10):5285-90 PMID: 1922045
  48. Binding of general transcription factor TFIIB to an acidic activating region.
    Nature. 1991 Oct 10;353(6344):569-71 PMID: 1922364
  49. Role of nucleosomal cores and histone H1 in regulation of transcription by RNA polymerase II.
    Science. 1991 Oct 11;254(5029):238-45 PMID: 1718039
  50. DMSO-enhanced whole cell yeast transformation.
    Nucleic Acids Res. 1991 Oct 25;19(20):5791 PMID: 1945859
  51. The nonphosphorylated form of RNA polymerase II preferentially associates with the preinitiation complex.
    Proc Natl Acad Sci U S A. 1991 Nov 15;88(22):10004-8 PMID: 1946417
  52. DNA binding provides a signal for phosphorylation of the RNA polymerase II heptapeptide repeats.
    Genes Dev. 1992 Mar;6(3):426-38 PMID: 1547941
  53. Mechanism of assembly of the RNA polymerase II preinitiation complex. Evidence for a functional interaction between the carboxyl-terminal domain of the largest subunit of RNA polymerase II and a high molecular mass form of the TATA factor.
    J Biol Chem. 1992 Apr 25;267(12):8464-7 PMID: 1569096
  54. The interaction of RNA polymerase II with the adenovirus-2 major late promoter is precluded by phosphorylation of the C-terminal domain of subunit IIa.
    J Biol Chem. 1992 May 25;267(15):10500-6 PMID: 1316903
  55. Isolation and phenotypic analysis of conditional-lethal, linker-insertion mutations in the gene encoding the largest subunit of RNA polymerase II in Saccharomyces cerevisiae.
    Mol Gen Genet. 1992 Apr;232(3):408-14 PMID: 1588909
  56. Specific interaction between the nonphosphorylated form of RNA polymerase II and the TATA-binding protein.
    Cell. 1992 May 29;69(5):871-81 PMID: 1591781
  57. A novel transcription factor reveals a functional link between the RNA polymerase II CTD and TFIID.
    Cell. 1992 May 29;69(5):883-94 PMID: 1591782
  58. Hold back of RNA polymerase II at the transcription start site mediates down-regulation of c-myc in vivo.
    EMBO J. 1992 Sep;11(9):3307-14 PMID: 1505520
  59. The acidic activator GAL4-AH can stimulate polymerase II transcription by promoting assembly of a closed complex requiring TFIID and TFIIA.
    Genes Dev. 1992 Sep;6(9):1716-27 PMID: 1516830
  60. The VP16 transcription activation domain is functional when targeted to a promoter-proximal RNA sequence.
    Genes Dev. 1992 Nov;6(11):2077-87 PMID: 1427073
  61. Promoter melting and TFIID complexes on Drosophila genes in vivo.
    Genes Dev. 1992 Nov;6(11):2190-200 PMID: 1427079
  62. The block to transcriptional elongation within the human c-myc gene is determined in the promoter-proximal region.
    Genes Dev. 1992 Nov;6(11):2201-13 PMID: 1427080
  63. Yeast RNA polymerase II initiation factor e: isolation and identification as the functional counterpart of human transcription factor IIB.
    Proc Natl Acad Sci U S A. 1992 Dec 1;89(23):11292-6 PMID: 1454810
  64. Pattern of aromatic and hydrophobic amino acids critical for one of two subdomains of the VP16 transcriptional activator.
    Proc Natl Acad Sci U S A. 1993 Feb 1;90(3):883-7 PMID: 8381535
  65. Initiation of transcription by RNA polymerase II: a multi-step process.
    Prog Nucleic Acid Res Mol Biol. 1993;44:67-108 PMID: 8434126
  66. DNA topology and a minimal set of basal factors for transcription by RNA polymerase II.
    Cell. 1993 May 7;73(3):533-40 PMID: 8490964
  67. Multiple functional domains of human transcription factor IIB: distinct interactions with two general transcription factors and RNA polymerase II.
    Genes Dev. 1993 Jun;7(6):1021-32 PMID: 8504927
  68. A multisubunit complex associated with the RNA polymerase II CTD and TATA-binding protein in yeast.
    Cell. 1993 Jul 2;73(7):1361-75 PMID: 8324825
Article Info
Journal
Molecular and cellular biology
Abbr.
Mol Cell Biol
ISSN
0270-7306
Published
1994-11-00
Pages
7507-16
Language
English
Region
United States
NLM ID
8109087
PMCID
PMC359287
Subset
IM
Analysis Services
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