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PMID: 7664740 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

In vitro reconstitution of mammalian U2 and U5 snRNPs active in splicing: Sm proteins are functionally interchangeable and are essential for the formation of functional U2 and U5 snRNPs.

The EMBO journal ·Vol. 14 ·No. 16 ·1995-08-15 ·Pages 4010-21

Ségault V, Will CL, Sproat BS, Lührmann R

Abstract

An in vitro reconstitution/splicing complementation system has been developed which has allowed the investigation of the role of mammalian U2 and U5 snRNP components in splicing. U2 or U5 snRNP cores are first reconstituted from purified native snRNP core proteins and snRNA in the absence of cellular extract and are subsequently added to splicing extracts depleted of either U2 or U5 snRNP. When snRNPs reconstituted with HeLa U2 or U5 snRNA were added to U2- or U5-depleted nuclear extract, splicing was complemented. Addition of naked snRNA, on the other hand, did not restore splicing, demonstrating that the core proteins are essential for both U2 and U5 snRNP functions in splicing. Hybrid U2 or U5 snRNPs, reconstituted with core proteins isolated from U1 or U2 snRNPs, were equally active in splicing complementation, indicating that the snRNP core proteins are functionally interchangeable. U5 snRNPs reconstituted from in vitro transcribed U5 snRNA restored splicing to a level identical to that observed with particles reconstituted from authentic HeLa U5 snRNA. In contrast, splicing could not be restored to U2-depleted extract by the addition of snRNPs reconstituted from synthetic U2 snRNA, suggesting that U2 snRNA base modifications are essential for U2 snRNP function.

MeSH Terms
Base Sequence Cell Extracts HeLa Cells Humans Molecular Sequence Data Oligonucleotides, Antisense Pseudouridine/analysis RNA Caps/physiology RNA Splicing/physiology RNA, Messenger/genetics RNA, Small Nuclear/isolation & purification,metabolism Ribonucleoprotein, U2 Small Nuclear/isolation & purification,metabolism Ribonucleoprotein, U5 Small Nuclear/isolation & purification,metabolism Ribonucleoproteins, Small Nuclear/isolation & purification,metabolism Spliceosomes/metabolism
Chemicals
Cell Extracts Oligonucleotides, Antisense RNA Caps RNA, Messenger RNA, Small Nuclear Ribonucleoprotein, U2 Small Nuclear Ribonucleoprotein, U5 Small Nuclear Ribonucleoproteins, Small Nuclear Pseudouridine
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Ségault V
Institut für Molekularbiologie und Tumorforschung, Philpps Universität Marburg, Göttingen, Germany.
Will C L
Sproat B S
Lührmann R
References (66)
66 references, click to expand
  1. Sm and Sm-like proteins belong to a large family: identification of proteins of the U6 as well as the U1, U2, U4 and U5 snRNPs.
    EMBO J. 1995 May 1;14(9):2089-98 PMID: 7744014
  2. Phylogenetic conservation of modified nucleotides in the terminal loop 1 of the spliceosomal U5 snRNA.
    Biochimie. 1995;77(1-2):16-21 PMID: 7599272
  3. The determinants for Sm protein binding to Xenopus U1 and U5 snRNAs are complex and non-identical.
    EMBO J. 1993 Jan;12(1):223-32 PMID: 8381350
  4. Nucleo-cytoplasmic transport of U snRNPs: definition of a nuclear location signal in the Sm core domain that binds a transport receptor independently of the m3G cap.
    EMBO J. 1993 Feb;12(2):573-83 PMID: 7679989
  5. Conformational changes of U6 RNA during the spliceosome cycle: an intramolecular helix is essential both for initiating the U4-U6 interaction and for the first step of slicing.
    Genes Dev. 1993 Jul;7(7B):1377-89 PMID: 8330741
  6. Human snRNP polypeptide D1 promotes pre-mRNA splicing in yeast and defines nonessential yeast Smd1p sequences.
    Nucleic Acids Res. 1993 Jul 25;21(15):3501-5 PMID: 8346029
  7. Evidence that the 60-kDa protein of 17S U2 small nuclear ribonucleoprotein is immunologically and functionally related to the yeast PRP9 splicing factor and is required for the efficient formation of prespliceosomes.
    Proc Natl Acad Sci U S A. 1993 Sep 1;90(17):8229-33 PMID: 8367487
  8. Interaction of the human autoantigen p150 with splicing snRNPs.
    J Cell Sci. 1993 Jul;105 ( Pt 3):685-97 PMID: 8408296
  9. Interaction of mammalian splicing factor SF3a with U2 snRNP and relation of its 60-kD subunit to yeast PRP9.
    Science. 1993 Oct 1;262(5130):102-5 PMID: 8211112
  10. Protein composition of mammalian spliceosomal snRNPs.
    Mol Biol Rep. 1993 Aug;18(2):121-6 PMID: 8232294
  11. Yeast protein splicing factors involved in nuclear pre-mRNA splicing.
    Mol Biol Rep. 1993 Aug;18(2):99-103 PMID: 8232301
  12. Functional analysis of mutant Xenopus U2 snRNAs.
    Cell. 1989 Oct 6;59(1):159-69 PMID: 2790958
  13. Gamma-monomethyl phosphate: a cap structure in spliceosomal U6 small nuclear RNA.
    Proc Natl Acad Sci U S A. 1989 Nov;86(21):8280-3 PMID: 2813391
  14. A compensatory base change in human U2 snRNA can suppress a branch site mutation.
    Genes Dev. 1989 Oct;3(10):1545-52 PMID: 2612904
  15. Mammalian pre-mRNA branch site selection by U2 snRNP involves base pairing.
    Genes Dev. 1989 Oct;3(10):1553-61 PMID: 2558966
  16. U2 snRNA sequences that bind U2-specific proteins are dispensable for the function of U2 snRNP in splicing.
    Genes Dev. 1989 Dec;3(12A):1887-98 PMID: 2559872
  17. Electron microscopy of small nuclear ribonucleoprotein (snRNP) particles U2 and U5: evidence for a common structure-determining principle in the major U snRNP family.
    Proc Natl Acad Sci U S A. 1990 Mar;87(5):1710-4 PMID: 2137927
  18. In vitro reconstitution of functional yeast U2 snRNPs.
    Genes Dev. 1989 Dec;3(12B):2124-36 PMID: 2560754
  19. In vitro assembly of yeast U6 snRNP: a functional assay.
    Genes Dev. 1989 Dec;3(12B):2137-50 PMID: 2560755
  20. Multiple domains of U1 snRNA, including U1 specific protein binding sites, are required for splicing.
    EMBO J. 1990 Apr;9(4):1237-44 PMID: 2138978
  21. The trimethylguanosine cap structure of U1 snRNA is a component of a bipartite nuclear targeting signal.
    Cell. 1990 Aug 10;62(3):569-77 PMID: 2143105
  22. Purification of small nuclear ribonucleoprotein particles with antibodies against modified nucleosides of small nuclear RNAs.
    Methods Enzymol. 1990;181:232-57 PMID: 2143251
  23. A 69-kD protein that associates reversibly with the Sm core domain of several spliceosomal snRNP species.
    J Cell Biol. 1994 Feb;124(3):261-72 PMID: 8294511
  24. Mutations in an essential U2 small nuclear RNA structure cause cold-sensitive U2 small nuclear ribonucleoprotein function by favoring competing alternative U2 RNA structures.
    Mol Cell Biol. 1994 Mar;14(3):1689-97 PMID: 8114704
  25. Pseudouridine formation in U2 small nuclear RNA.
    Proc Natl Acad Sci U S A. 1994 Apr 12;91(8):3324-8 PMID: 8159747
  26. m3G cap hypermethylation of U1 small nuclear ribonucleoprotein (snRNP) in vitro: evidence that the U1 small nuclear RNA-(guanosine-N2)-methyltransferase is a non-snRNP cytoplasmic protein that requires a binding site on the Sm core domain.
    Mol Cell Biol. 1994 Jun;14(6):4160-72 PMID: 8196654
  27. A novel set of spliceosome-associated proteins and the essential splicing factor PSF bind stably to pre-mRNA prior to catalytic step II of the splicing reaction.
    EMBO J. 1994 Jul 15;13(14):3356-67 PMID: 8045264
  28. Interactions between highly conserved U2 small nuclear RNA structures and Prp5p, Prp9p, Prp11p, and Prp21p proteins are required to ensure integrity of the U2 small nuclear ribonucleoprotein in Saccharomyces cerevisiae.
    Mol Cell Biol. 1994 Sep;14(9):6337-49 PMID: 8065365
  29. Formation of pseudouridine in U5 small nuclear RNA.
    Biochemistry. 1994 Aug 30;33(34):10423-7 PMID: 8068680
  30. The association of the U1-specific 70K and C proteins with U1 snRNPs is mediated in part by common U snRNP proteins.
    EMBO J. 1994 Sep 1;13(17):4113-25 PMID: 8076607
  31. snRNP Sm proteins share two evolutionarily conserved sequence motifs which are involved in Sm protein-protein interactions.
    EMBO J. 1995 May 1;14(9):2076-88 PMID: 7744013
  32. Pseudouridine modification of U5 RNA in ribonucleoprotein particles assembled in vitro.
    Mol Cell Biol. 1991 Dec;11(12):5998-6006 PMID: 1719377
  33. Efficient association of U2 snRNPs with pre-mRNA requires an essential U2 RNA structural element.
    Genes Dev. 1991 Dec;5(12B):2521-33 PMID: 1752442
  34. U5 snRNA interacts with exon sequences at 5' and 3' splice sites.
    Cell. 1992 Feb 21;68(4):743-54 PMID: 1739979
  35. 3'-terminal labelling of RNA with T4 RNA ligase.
    Nature. 1978 Oct 12;275(5680):560-1 PMID: 692735
  36. Antibodies to small nuclear RNAs complexed with proteins are produced by patients with systemic lupus erythematosus.
    Proc Natl Acad Sci U S A. 1979 Nov;76(11):5495-9 PMID: 316537
  37. Isolation of small nuclear ribonucleoproteins containing U1, U2, U4, U5, and U6 RNAs.
    J Biol Chem. 1983 Feb 25;258(4):2604-13 PMID: 6185498
  38. Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei.
    Nucleic Acids Res. 1983 Mar 11;11(5):1475-89 PMID: 6828386
  39. U2 RNA shares a structural domain with U1, U4, and U5 RNAs.
    EMBO J. 1982;1(10):1259-65 PMID: 6202507
  40. Nuclear segregation of U2 snRNA requires binding of specific snRNP proteins.
    Cell. 1985 Jan;40(1):111-8 PMID: 2578319
  41. Cap trimethylation of U snRNA is cytoplasmic and dependent on U snRNP protein binding.
    Cell. 1986 Sep 12;46(6):905-11 PMID: 2944599
  42. Purification of the individual snRNPs U1, U2, U5 and U4/U6 from HeLa cells and characterization of their protein constituents.
    EMBO J. 1986 Dec 20;5(13):3509-16 PMID: 2951249
  43. Recognition of the TACTAAC box during mRNA splicing in yeast involves base pairing to the U2-like snRNA.
    Cell. 1987 Apr 24;49(2):229-39 PMID: 3552247
  44. A monoclonal antibody against 2,2,7-trimethylguanosine that reacts with intact, class U, small nuclear ribonucleoproteins as well as with 7-methylguanosine-capped RNAs.
    Eur J Biochem. 1987 Oct 15;168(2):461-7 PMID: 2959477
  45. Gel electrophoretic isolation of splicing complexes containing U1 small nuclear ribonucleoprotein particles.
    Mol Cell Biol. 1988 Feb;8(2):814-21 PMID: 2832738
  46. Assembly of functional U1 and U2 human-amphibian hybrid snRNPs in Xenopus laevis oocytes.
    Science. 1988 Sep 9;241(4871):1328-31 PMID: 2970672
  47. In vitro reconstitution of snRNPs: a reconstituted U4/U6 snRNP participates in splicing complex formation.
    Genes Dev. 1989 Apr;3(4):479-87 PMID: 2524422
  48. 20S small nuclear ribonucleoprotein U5 shows a surprisingly complex protein composition.
    Proc Natl Acad Sci U S A. 1989 Aug;86(16):6038-42 PMID: 2527369
  49. An essential signaling role for the m3G cap in the transport of U1 snRNP to the nucleus.
    Science. 1990 Aug 17;249(4970):786-90 PMID: 2143847
  50. Targeted snRNP depletion reveals an additional role for mammalian U1 snRNP in spliceosome assembly.
    Cell. 1990 Oct 19;63(2):293-302 PMID: 2170025
  51. Conserved domains of human U4 snRNA required for snRNP and spliceosome assembly.
    Nucleic Acids Res. 1990 Nov 11;18(21):6223-9 PMID: 2147057
  52. Structure of spliceosomal snRNPs and their role in pre-mRNA splicing.
    Biochim Biophys Acta. 1990 Nov 30;1087(3):265-92 PMID: 2147394
  53. Evidence for three distinct D proteins, which react differentially with anti-Sm autoantibodies, in the cores of the major snRNPs U1, U2, U4/U6 and U5.
    Nucleic Acids Res. 1990 Nov 25;18(22):6475-84 PMID: 1701240
  54. Mutations in yeast U5 snRNA alter the specificity of 5' splice-site cleavage.
    Cell. 1991 Apr 5;65(1):115-23 PMID: 2013092
  55. Diversity in the signals required for nuclear accumulation of U snRNPs and variety in the pathways of nuclear transport.
    J Cell Biol. 1991 May;113(4):705-14 PMID: 1827444
  56. Antisense probes containing 2-aminoadenosine allow efficient depletion of U5 snRNP from HeLa splicing extracts.
    Nucleic Acids Res. 1991 Jun 25;19(12):3193-8 PMID: 1648201
  57. Immunoaffinity purification of a [U4/U6.U5] tri-snRNP from human cells.
    Genes Dev. 1991 Aug;5(8):1439-52 PMID: 1831175
  58. Base pairing between U2 and U6 snRNAs is necessary for splicing of a mammalian pre-mRNA.
    Nature. 1991 Aug 29;352(6338):818-21 PMID: 1831878
  59. Genetic evidence for base pairing between U2 and U6 snRNA in mammalian mRNA splicing.
    Nature. 1991 Aug 29;352(6338):821-4 PMID: 1831879
  60. Reconstituted mammalian U4/U6 snRNP complements splicing: a mutational analysis.
    EMBO J. 1992 Jan;11(1):345-59 PMID: 1740113
  61. Reconstitution of functional mammalian U4 small nuclear ribonucleoprotein: Sm protein binding is not essential for splicing in vitro.
    Mol Cell Biol. 1992 Apr;12(4):1460-8 PMID: 1532228
  62. Biochemical mechanisms of constitutive and regulated pre-mRNA splicing.
    Annu Rev Cell Biol. 1991;7:559-99 PMID: 1839712
  63. Interactions of small nuclear RNA's with precursor messenger RNA during in vitro splicing.
    Science. 1992 Sep 25;257(5078):1918-25 PMID: 1411506
  64. A novel base-pairing interaction between U2 and U6 snRNAs suggests a mechanism for the catalytic activation of the spliceosome.
    Cell. 1992 Nov 27;71(5):803-17 PMID: 1423631
  65. Small nuclear ribonucleoprotein (RNP) U2 contains numerous additional proteins and has a bipartite RNP structure under splicing conditions.
    Mol Cell Biol. 1993 Jan;13(1):307-19 PMID: 8380223
  66. U2 small nuclear RNA 3' end formation is directed by a critical internal structure distinct from the processing site.
    Mol Cell Biol. 1993 Feb;13(2):1119-29 PMID: 8423779
Article Info
Journal
The EMBO journal
Abbr.
EMBO J
ISSN
0261-4189
Published
1995-08-15
Pages
4010-21
Language
English
Region
England
NLM ID
8208664
PMCID
PMC394479
Subset
IM
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