Home LiteratureArticle Details
PMID: 7498763 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S.

The role of DNA repair genes in recombination between repeated sequences in yeast.

Genetics ·Vol. 140 ·No. 4 ·1995-08-00 ·Pages 1199-211

Liefshitz B, Parket A, Maya R, Kupiec M

Abstract

The presence of repeated sequences in the genome represents a potential source of karyotypic instability. Genetic control of recombination is thus important to preserve the integrity of the genome. To investigate the genetic control of recombination between repeated sequences, we have created a series of isogenic strains in which we could assess the role of genes involved in DNA repair in two types of recombination: direct repeat recombination and ectopic gene conversion. Naturally occurring (Ty elements) and artificially constructed repeats could be compared in the same cell population. We have found that direct repeat recombination and gene conversion have different genetic requirements. The role of the RAD51, RAD52, RAD54, RAD55, and RAD57 genes, which are involved in recombinational repair, was investigated. Based on the phenotypes of single and double mutants, these genes can be divided into three functional subgroups: one composed of RAD52, a second one composed of RAD51 and RAD54, and a third one that includes the RAD55 and RAD57 genes. Among seven genes involved in excision repair tested, only RAD1 and RAD10 played a role in the types of recombination studied. We did not detect a differential effect of any rad mutation on Ty elements as compared to artificially constructed repeats.

MeSH Terms
Adenosine Triphosphatases Base Sequence DNA Helicases DNA Repair/genetics DNA Repair Enzymes DNA, Fungal/genetics DNA-Binding Proteins/genetics,physiology Endonucleases/genetics,physiology Fungal Proteins/genetics,physiology Gene Conversion/genetics Genes, Fungal Molecular Sequence Data Polymerase Chain Reaction Rad51 Recombinase Rad52 DNA Repair and Recombination Protein Recombination, Genetic Repetitive Sequences, Nucleic Acid Saccharomyces cerevisiae/genetics Saccharomyces cerevisiae Proteins Single-Strand Specific DNA and RNA Endonucleases
Chemicals
DNA, Fungal DNA-Binding Proteins Fungal Proteins RAD52 protein, S cerevisiae RAD55 protein, S cerevisiae Rad52 DNA Repair and Recombination Protein Saccharomyces cerevisiae Proteins RAD51 protein, S cerevisiae Rad51 Recombinase Endonucleases RAD1 protein, S cerevisiae RAD10 protein, S cerevisiae Single-Strand Specific DNA and RNA Endonucleases Adenosine Triphosphatases RAD54 protein, S cerevisiae RAD57 protein, S cerevisiae DNA Helicases DNA Repair Enzymes
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Liefshitz B
Department of Molecular Microbiology and Biotechnology, Tel Aviv University, Ramat Aviv, Israel.
Parket A
Maya R
Kupiec M
References (69)
69 references, click to expand
  1. Yeast intrachromosomal recombination: long gene conversion tracts are preferentially associated with reciprocal exchange and require the RAD1 and RAD3 gene products.
    Genetics. 1989 Dec;123(4):683-94 PMID: 2558957
  2. Gene conversion between duplicated genetic elements in yeast.
    Nature. 1981 Jul 23;292(5821):306-11 PMID: 6265790
  3. Yeast RAD14 and human xeroderma pigmentosum group A DNA-repair genes encode homologous proteins.
    Nature. 1992 Feb 6;355(6360):555-8 PMID: 1741034
  4. Different types of recombination events are controlled by the RAD1 and RAD52 genes of Saccharomyces cerevisiae.
    Genetics. 1988 Oct;120(2):367-77 PMID: 3058548
  5. Role of reciprocal exchange, one-ended invasion crossover and single-strand annealing on inverted and direct repeat recombination in yeast: different requirements for the RAD1, RAD10, and RAD52 genes.
    Genetics. 1995 Jan;139(1):109-23 PMID: 7705617
  6. Interaction of the yeast RAD7 and SIR3 proteins: implications for DNA repair and chromatin structure.
    Genes Dev. 1994 Sep 1;8(17):2035-45 PMID: 7958876
  7. RAD7 gene of Saccharomyces cerevisiae: transcripts, nucleotide sequence analysis, and functional relationship between the RAD7 and RAD23 gene products.
    Mol Cell Biol. 1986 May;6(5):1497-507 PMID: 3023893
  8. Recombination of Ty elements in yeast can be induced by a double-strand break.
    Genetics. 1995 May;140(1):67-77 PMID: 7635309
  9. Allelic and ectopic interactions in recombination-defective yeast strains.
    Genetics. 1991 Jan;127(1):53-60 PMID: 2016046
  10. Characterization of recombination intermediates from DNA injected into Xenopus laevis oocytes: evidence for a nonconservative mechanism of homologous recombination.
    Mol Cell Biol. 1991 Jun;11(6):3278-87 PMID: 2038331
  11. Yeast DNA repair and recombination proteins Rad1 and Rad10 constitute a single-stranded-DNA endonuclease.
    Nature. 1993 Apr 29;362(6423):860-2 PMID: 8479526
  12. Rad51 protein involved in repair and recombination in S. cerevisiae is a RecA-like protein.
    Cell. 1992 May 1;69(3):457-70 PMID: 1581961
  13. Similarity of the yeast RAD51 filament to the bacterial RecA filament.
    Science. 1993 Mar 26;259(5103):1896-9 PMID: 8456314
  14. A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae.
    Genetics. 1989 May;122(1):19-27 PMID: 2659436
  15. Two alternative pathways of double-strand break repair that are kinetically separable and independently modulated.
    Mol Cell Biol. 1992 Mar;12(3):1292-303 PMID: 1545810
  16. Mitotic recombination among subtelomeric Y' repeats in Saccharomyces cerevisiae.
    Genetics. 1990 Mar;124(3):547-59 PMID: 2179053
  17. DNA repair genes and proteins of Saccharomyces cerevisiae.
    Annu Rev Genet. 1993;27:33-70 PMID: 8122907
  18. Nucleotide sequence and transcriptional regulation of the yeast recombinational repair gene RAD51.
    Mol Cell Biol. 1992 Jul;12(7):3235-46 PMID: 1620128
  19. Meiotic gene conversion and crossing over between dispersed homologous sequences occurs frequently in Saccharomyces cerevisiae.
    Genetics. 1987 Feb;115(2):233-46 PMID: 3549449
  20. Ectopic recombination between Ty elements in Saccharomyces cerevisiae is not induced by DNA damage.
    Mol Cell Biol. 1992 Oct;12(10):4441-8 PMID: 1328855
  21. Analysis of meiosis-defective mutations in yeast by physical monitoring of recombination.
    Genetics. 1986 Jul;113(3):551-67 PMID: 3015718
  22. Chromosomal translocations generated by high-frequency meiotic recombination between repeated yeast genes.
    Genetics. 1986 Nov;114(3):731-52 PMID: 3539696
  23. Specific cleavage of model recombination and repair intermediates by the yeast Rad1-Rad10 DNA endonuclease.
    Science. 1994 Sep 30;265(5181):2082-5 PMID: 8091230
  24. The RAD7 and RAD16 genes, which are essential for pyrimidine dimer removal from the silent mating type loci, are also required for repair of the nontranscribed strand of an active gene in Saccharomyces cerevisiae.
    Mol Cell Biol. 1994 Sep;14(9):6135-42 PMID: 8065346
  25. Transcriptional induction of Ty recombination in yeast.
    Proc Natl Acad Sci U S A. 1994 Dec 20;91(26):12711-5 PMID: 7809107
  26. Involvement of cDNA in homologous recombination between Ty elements in Saccharomyces cerevisiae.
    Mol Cell Biol. 1992 Apr;12(4):1613-20 PMID: 1372387
  27. A method for gene disruption that allows repeated use of URA3 selection in the construction of multiply disrupted yeast strains.
    Genetics. 1987 Aug;116(4):541-5 PMID: 3305158
  28. Position effects in ectopic and allelic mitotic recombination in Saccharomyces cerevisiae.
    Genetics. 1989 Oct;123(2):261-8 PMID: 2684745
  29. Incision and postincision steps of pyrimidine dimer removal in excision-defective mutants of Saccharomyces cerevisiae.
    J Bacteriol. 1981 Nov;148(2):618-23 PMID: 7028721
  30. Intrachromosomal gene conversion in yeast.
    Nature. 1981 Jan 15;289(5794):144-8 PMID: 7005693
  31. DNA double-strand breaks and the RAD50-RAD57 genes in Saccharomyces.
    Semin Cancer Biol. 1993 Apr;4(2):73-83 PMID: 8513150
  32. RAD1, an excision repair gene of Saccharomyces cerevisiae, is also involved in recombination.
    Mol Cell Biol. 1988 Sep;8(9):3619-26 PMID: 3065620
  33. The origin of spontaneous mutation in Saccharomyces cerevisiae.
    Genetics. 1980 Dec;96(4):819-39 PMID: 7021317
  34. Functional domains within FEN-1 and RAD2 define a family of structure-specific endonucleases: implications for nucleotide excision repair.
    Genes Dev. 1994 Jun 1;8(11):1344-55 PMID: 7926735
  35. One-step gene disruption in yeast.
    Methods Enzymol. 1983;101:202-11 PMID: 6310324
  36. Spontaneous mutation by mutagenic repair of spontaneous lesions in DNA.
    Nature. 1976 Dec 23-30;264(5588):719-22 PMID: 796728
  37. Intermolecular recombination between DNAs introduced into mouse L cells is mediated by a nonconservative pathway that leads to crossover products.
    Mol Cell Biol. 1990 Jan;10(1):103-12 PMID: 2294396
  38. Inheritance of spontaneous mutability in yeast.
    Genetics. 1971 Sep;69(1):17-27 PMID: 4943749
  39. Intergenic conversion and reiterated genes.
    Nature. 1981 Mar 19;290(5803):191-2 PMID: 7207612
  40. The RAD52 gene is required for homothallic interconversion of mating types and spontaneous mitotic recombination in yeast.
    Proc Natl Acad Sci U S A. 1980 Jan;77(1):503-7 PMID: 6987653
  41. Nucleotide sequence of the wild-type RAD4 gene of Saccharomyces cerevisiae and characterization of mutant rad4 alleles.
    J Bacteriol. 1989 Apr;171(4):1862-9 PMID: 2649477
  42. Yeast nucleotide excision repair proteins Rad2 and Rad4 interact with RNA polymerase II basal transcription factor b (TFIIH).
    Mol Cell Biol. 1994 Jun;14(6):3569-76 PMID: 8196602
  43. Effects of the RAD52 Gene on Recombination in SACCHAROMYCES CEREVISIAE.
    Genetics. 1980 Jan;94(1):31-50 PMID: 17248995
  44. The genetic control of direct-repeat recombination in Saccharomyces: the effect of rad52 and rad1 on mitotic recombination at GAL10, a transcriptionally regulated gene.
    Genetics. 1989 Dec;123(4):725-38 PMID: 2693208
  45. Use of a chromosomal inverted repeat to demonstrate that the RAD51 and RAD52 genes of Saccharomyces cerevisiae have different roles in mitotic recombination.
    Genetics. 1994 Nov;138(3):587-95 PMID: 7851757
  46. Characterization of null mutants of the RAD55 gene of Saccharomyces cerevisiae: effects of temperature, osmotic strength and mating type.
    Genetics. 1987 Aug;116(4):547-53 PMID: 3305159
  47. A unique pathway of double-strand break repair operates in tandemly repeated genes.
    Mol Cell Biol. 1991 Mar;11(3):1222-31 PMID: 1996088
  48. Deoxyribonucleic acid repair in the yeast Saccharomyces cerevisiae.
    Microbiol Rev. 1988 Mar;52(1):70-102 PMID: 3280967
  49. The Saccharomyces cerevisiae DNA repair gene RAD23 encodes a nuclear protein containing a ubiquitin-like domain required for biological function.
    Mol Cell Biol. 1993 Dec;13(12):7757-65 PMID: 8246991
  50. Genetic control of intrachromosomal recombination in Saccharomyces cerevisiae. I. Isolation and genetic characterization of hyper-recombination mutations.
    Genetics. 1988 Aug;119(4):779-90 PMID: 3044923
  51. Sister chromatids are preferred over homologs as substrates for recombinational repair in Saccharomyces cerevisiae.
    Genetics. 1992 Oct;132(2):387-402 PMID: 1427035
  52. A positive selection for mutants lacking orotidine-5'-phosphate decarboxylase activity in yeast: 5-fluoro-orotic acid resistance.
    Mol Gen Genet. 1984;197(2):345-6 PMID: 6394957
  53. RAD10, an excision repair gene of Saccharomyces cerevisiae, is involved in the RAD1 pathway of mitotic recombination.
    Mol Cell Biol. 1990 Jun;10(6):2485-91 PMID: 2188090
  54. Sequence of RAD54, a Saccharomyces cerevisiae gene involved in recombination and repair.
    Gene. 1991 Jul 31;104(1):103-6 PMID: 1916269
  55. Catalysis of ATP-dependent homologous DNA pairing and strand exchange by yeast RAD51 protein.
    Science. 1994 Aug 26;265(5176):1241-3 PMID: 8066464
  56. Molecular mechanisms of pyrimidine dimer excision in Saccharomyces cerevisiae: incision of ultraviolet-irradiated deoxyribonucleic acid in vivo.
    J Bacteriol. 1981 May;146(2):692-704 PMID: 7012136
  57. Dominant negative alleles of RAD52 reveal a DNA repair/recombination complex including Rad51 and Rad52.
    Genes Dev. 1993 Sep;7(9):1755-65 PMID: 8370524
  58. Unrepaired heteroduplex DNA in Saccharomyces cerevisiae is decreased in RAD1 RAD52-independent recombination.
    Genetics. 1994 Jun;137(2):393-405 PMID: 8070653
  59. Purification and characterization of the Saccharomyces cerevisiae RAD1/RAD10 endonuclease.
    J Biol Chem. 1993 Dec 15;268(35):26391-9 PMID: 8253764
  60. Nucleotide sequence of the RAD57 gene of Saccharomyces cerevisiae.
    Gene. 1991 Aug 30;105(1):139-40 PMID: 1937004
  61. Removal of nonhomologous DNA ends in double-strand break recombination: the role of the yeast ultraviolet repair gene RAD1.
    Science. 1992 Oct 16;258(5081):480-4 PMID: 1411547
  62. Nucleotide sequence, transcript mapping, and regulation of the RAD2 gene of Saccharomyces cerevisiae.
    J Bacteriol. 1986 Jun;166(3):914-23 PMID: 3011752
  63. Gene conversion as a secondary mechanism of short interspersed element (SINE) evolution.
    Mol Cell Biol. 1995 Jan;15(1):19-25 PMID: 7799926
  64. Sequence of the RAD55 gene of Saccharomyces cerevisiae: similarity of RAD55 to prokaryotic RecA and other RecA-like proteins.
    Gene. 1994 May 3;142(1):103-6 PMID: 8181742
  65. Genetic control of diploid recovery after gamma-irradiation in the yeast Saccharomyces cerevisiae.
    Mutat Res. 1980 Dec;73(2):251-65 PMID: 7007877
  66. Multiple pathways for homologous recombination in Saccharomyces cerevisiae.
    Genetics. 1995 Jan;139(1):45-56 PMID: 7705645
  67. Meiotic recombination between repeated transposable elements in Saccharomyces cerevisiae.
    Mol Cell Biol. 1988 Jul;8(7):2942-54 PMID: 2841590
  68. High efficiency transformation of intact yeast cells using single stranded nucleic acids as a carrier.
    Curr Genet. 1989 Dec;16(5-6):339-46 PMID: 2692852
  69. The repair of double-strand breaks in the nuclear DNA of Saccharomyces cerevisiae and its genetic control.
    Mol Gen Genet. 1976 Jan 16;143(2):119-29 PMID: 765749
Article Info
Journal
Genetics
Abbr.
Genetics
ISSN
0016-6731
Published
1995-08-00
Pages
1199-211
Language
English
Region
United States
NLM ID
0374636
PMCID
PMC1206687
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com