Home LiteratureArticle Details

PMID: 6429642 Published · ppublish English Comparative Study Journal Article Research Support, Non-U.S. Gov't

The nucleotide sequences of the 5 S rRNAs of seven molds and a yeast and their use in studying ascomycete phylogeny.

Nucleic acids research ·Vol. 12 ·No. 12 ·1984-06-25 ·Pages 4881-92

Chen MW, Anné J, Volckaert G, Huysmans E, Vandenberghe A, De Wachter R

Abstract

The sequences of the 5 S rRNAs isolated from 8 ascomycete species belonging to the genera Aspergillus, Penicillium, Acremonium and Candida are reported. Two of the examined strains each yielded a mixture of 3 slightly different 5 S RNAs, which were individually sequenced after fractionation. A previously published sequence for Aspergillus nidulans 5 S RNA was found to contain errors. Reconstruction of an evolutionary tree based on 5 S RNA sequences showed that the 16 presently examined ascomycetes form three clusters. The same threefold partition can be observed in the secondary structure pattern, each cluster showing a slightly different variant of the general 5-helix model for 5 S rRNA (De Wachter, Chen and Vandenberghe (1982) Biochimie 64, 311-329), and different sets of secondary structure equilibrium forms in helices C and E of the aforementioned model.

MeSH Terms

Aspergillus flavus/genetics Aspergillus nidulans/genetics Aspergillus niger/genetics Base Sequence Candida albicans/genetics Fungi/genetics Mitosporic Fungi/genetics Penicillium/genetics Penicillium chrysogenum/genetics Phylogeny RNA, Ribosomal Species Specificity

Chemicals

RNA, Ribosomal

Authors & Affiliations

6 authors, click to expand affiliations / ORCID

Chen M W

Anné J

Volckaert G

Huysmans E

Vandenberghe A

De Wachter R

References (22)

22 references, click to expand

Selective reaction of glyoxal with guanine residues in native and denatured Escherichia coli 5S RNA.
Biochimie. 1973;55(2):135-42 PMID: 4198187
On the stochastic model for estimation of mutational distance between homologous proteins.
J Mol Evol. 1972 Dec 29;2(1):87-90 PMID: 4668865
A micromethod for base analysis of 32P-labeled oligoribonulcleotides.
Anal Biochem. 1977 Nov;83(1):222-7 PMID: 920941
Use of in vitro 32P labeling in the sequence analysis of nonradioactive tRNAs.
Methods Enzymol. 1979;59:58-109 PMID: 220499
Direct chemical method for sequencing RNA.
Proc Natl Acad Sci U S A. 1979 Apr;76(4):1760-4 PMID: 377283
Nucleotide sequence of 5S ribosomal RNA from Aspergillus nidulans and Neurospora crassa.
Nucleic Acids Res. 1981 Mar 25;9(6):1445-50 PMID: 6453331
Secondary structure of eukaryotic cytoplasmic 5S ribosomal RNA.
Proc Natl Acad Sci U S A. 1981 Apr;78(4):2150-4 PMID: 6787600
Dispersed 5S RNA genes in N. crassa: structure, expression and evolution.
Cell. 1981 Jun;24(3):819-28 PMID: 6454495
The nucleotide sequence of 5S ribosomal RNA from Schizosaccharomyces pombe.
J Biochem. 1981 May;89(5):1663-6 PMID: 6268620
Altered features in the secondary structure of Vicia faba 5.8s rRNA.
Nucleic Acids Res. 1981 Oct 24;9(20):5345-58 PMID: 7301589
Two distinct conformations of rat liver ribosomal 5S RNA.
Nucleic Acids Res. 1982 Jun 11;10(11):3381-9 PMID: 7099965
The sequence of the 5.8 S ribosomal RNA of the crustacean Artemia salina. With a proposal for a general secondary structure model for 5.8 S ribosomal RNA.
Nucleic Acids Res. 1982 Jun 11;10(11):3517-30 PMID: 7099966
Conservation of secondary structure in 5 S ribosomal RNA: a uniform model for eukaryotic, eubacterial, archaebacterial and organelle sequences is energetically favourable.
Biochimie. 1982 May;64(5):311-29 PMID: 6809061
Structural studies of 5 S ribosomal RNAs from a thermophilic fungus, Thermomyces lanuginosus. A comparison of generalized models for eukaryotic 5 S RNAs.
J Biol Chem. 1982 Oct 10;257(19):11395-404 PMID: 6889596
Sequences of three molluscan 5 S ribosomal RNAs confirm the validity of a dynamic secondary structure model.
Nucleic Acids Res. 1982 Aug 11;10(15):4679-85 PMID: 7133995
Nucleotide sequences of three poriferan 5 S ribosomal RNAs.
Nucleic Acids Res. 1982 Sep 11;10(17):5297-302 PMID: 7145701
Generalized structures of the 5S ribosomal RNAs.
Nucleic Acids Res. 1982 Nov 25;10(22):7323-44 PMID: 7155895
Sequences of the 5S rRNAs of Azotobacter vinelandii, Pseudomonas aeruginosa and Pseudomonas fluorescens with some notes on 5S RNA secondary structure.
Nucleic Acids Res. 1983 Mar 11;11(5):1245-52 PMID: 6402760
The nucleotide sequences of the 5S rRNAs of four mushrooms and their use in studying the phylogenetic position of basidiomycetes among the eukaryotes.
Nucleic Acids Res. 1983 May 11;11(9):2871-80 PMID: 6856478
Sequences of the 5S rRNAs of the thermo-acidophilic archaebacterium Sulfolobus solfataricus (Caldariella acidophila) and the thermophilic eubacteria Bacillus acidocaldarius and Thermus aquaticus.
Nucleic Acids Res. 1983 Jul 25;11(14):4667-76 PMID: 6878035
5S rRNA sequences from eight basidiomycetes and fungi imperfecti.
Nucleic Acids Res. 1983 Nov 11;11(21):7625-30 PMID: 6647033
Phylogeny of protozoa deduced from 5S rRNA sequences.
J Mol Evol. 1983;19(6):411-9 PMID: 6655700

Article Info

Journal

Nucleic acids research

Abbr.

Nucleic Acids Res

ISSN

0305-1048

DOI

10.1093/nar/12.12.4881

Published

1984-06-25

Pages

4881-92

Language

English

Region

England

NLM ID

0411011

PMCID

PMC318886

Subset

Databases

GENBANK

K02340, K02366, X00687, X00688, X00689, X00690, X00691, X00692, X00693

External Links

PubMed source DOI: 10.1093/nar/12.12.4881 PMC Full Text View journal details

Analysis Services

The nucleotide sequences of the 5 S rRNAs of seven molds and a yeast and their use in studying ascomycete phylogeny.

Contact

WeChat Official Account