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PMID: 33373169 Published · ppublish English Journal Article

An integrated pan-cancer analysis of TFAP4 aberrations and the potential clinical implications for cancer immunity.

Journal of cellular and molecular medicine ·Vol. 25 ·No. 4 ·2021-00-00 ·Pages 2082-2097

Liu JN, Kong XS, Sun P, Wang R, Li W, Chen QF

Abstract

Studies have shown that transcription factor activating enhancer binding protein 4 (TFAP4) plays a vital role in multiple types of cancer; however, the TFAP4 expression profile is still unknown, as is its value within the human pan-cancer analysis. The present study comprehensively analysed TFAP4 expression patterns from 33 types of malignancies, along with the significance of TFAP4 for prognosis prediction and cancer immunity. TFAP4 displayed inconsistent levels of gene expression across the diverse cancer cell lines, and displayed abnormal expression within most malignant tumours, which closely corresponded to overall survival. More importantly, the TFAP4 level was also significantly related to the degree of tumour infiltration. TFAP4 was correlated using gene markers in tumour-infiltrating immune cells and immune scores. TFAP4 expression was correlated with tumour mutation burden and microsatellite instability in different cancer types, and enrichment analyses identified TFAP4-associated terms and pathways. The present study comprehensively analysed the expression of TFAP4 across 33 distinct types of cancers, which revealed that TFAP4 may possibly play a vital role during cancer formation and development. TFAP4 is related to differing degrees of immune infiltration within cancers, which suggests the potential of TFAP4 as an immunotherapy target in cancers. Our study demonstrated that TFAP4 plays an important role in tumorigenesis as a prognostic biomarker, which highlights the possibility of developing new targeted treatments.

Keywords
TFAP4 immune infiltration pan-cancer prognostic biomarker
MeSH Terms
Biomarkers, Tumor Cell Line, Tumor Computational Biology/methods DNA-Binding Proteins/genetics,metabolism Gene Expression Regulation, Neoplastic Genetic Variation Humans Immunity Immunomodulation Lymphocytes, Tumor-Infiltrating/immunology,metabolism Neoplasms/genetics,immunology,mortality,pathology Prognosis Proportional Hazards Models Survival Analysis Transcription Factors/genetics,metabolism
Chemicals
Biomarkers, Tumor DNA-Binding Proteins Transcription Factors enhancer-binding protein AP-4
Authors & Affiliations
6 authors, click to expand affiliations / ORCID
Liu Jian-Nan
Department of Oncology, Yantai Yuhuangding Hospital, Yantai, China.
Kong Xiang-Shuo
Department of Oncology, Yantai Yuhuangding Hospital, Yantai, China.
Sun Ping ORCID
Department of Oncology, Yantai Yuhuangding Hospital, Yantai, China.
Wang Rui
Department of Respiratory Oncology, Fushan district people's hospital, Yantai, China.
Li Wang ORCID
Department of Medical Imaging and Interventional Radiology, Sun Yat-sen University Cancer Center, Guangzhou, China.
Chen Qi-Feng ORCID
Department of Medical Imaging and Interventional Radiology, Sun Yat-sen University Cancer Center, Guangzhou, China. | State Key Laboratory of Oncology in South China, Guangzhou, China. | Collaborative Innovation Center for Cancer Medicine, Guangzhou, China.
References (42)
42 references, click to expand
  1. Landscape of Microsatellite Instability Across 39 Cancer Types.
    JCO Precis Oncol. 2017;2017: PMID: 29850653
  2. An integrated pan-cancer analysis of TFAP4 aberrations and the potential clinical implications for cancer immunity.
    J Cell Mol Med. 2021 Feb;25(4):2082-2097 PMID: 33373169
  3. Molecular classification and precision therapy of cancer: immune checkpoint inhibitors.
    Front Med. 2018 Apr;12(2):229-235 PMID: 29209918
  4. The Cancer Genome Atlas Pan-Cancer analysis project.
    Nat Genet. 2013 Oct;45(10):1113-20 PMID: 24071849
  5. Comprehensive analyses of tumor immunity: implications for cancer immunotherapy.
    Genome Biol. 2016 Aug 22;17(1):174 PMID: 27549193
  6. Global cancer statistics 2018: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries.
    CA Cancer J Clin. 2018 Nov;68(6):394-424 PMID: 30207593
  7. Pan-cancer adaptive immune resistance as defined by the Tumor Inflammation Signature (TIS): results from The Cancer Genome Atlas (TCGA).
    J Immunother Cancer. 2018 Jun 22;6(1):63 PMID: 29929551
  8. Transcription factor AP-4 promotes tumorigenic capability and activates the Wnt/β-catenin pathway in hepatocellular carcinoma.
    Theranostics. 2018 Jun 7;8(13):3571-3583 PMID: 30026867
  9. TIMER: A Web Server for Comprehensive Analysis of Tumor-Infiltrating Immune Cells.
    Cancer Res. 2017 Nov 1;77(21):e108-e110 PMID: 29092952
  10. LncMAP: Pan-cancer atlas of long noncoding RNA-mediated transcriptional network perturbations.
    Nucleic Acids Res. 2018 Feb 16;46(3):1113-1123 PMID: 29325141
  11. Colon Cancer, Version 1.2017, NCCN Clinical Practice Guidelines in Oncology.
    J Natl Compr Canc Netw. 2017 Mar;15(3):370-398 PMID: 28275037
  12. Targeted literature review on use of tumor mutational burden status and programmed cell death ligand 1 expression to predict outcomes of checkpoint inhibitor treatment.
    Diagn Pathol. 2020 Jan 30;15(1):6 PMID: 32000815
  13. Tumor mutational and indel burden: a systematic pan-cancer evaluation as prognostic biomarkers.
    Ann Transl Med. 2019 Nov;7(22):640 PMID: 31930041
  14. LAYN Is a Prognostic Biomarker and Correlated With Immune Infiltrates in Gastric and Colon Cancers.
    Front Immunol. 2019 Jan 29;10:6 PMID: 30761122
  15. Microsatellite instability: a review of what the oncologist should know.
    Cancer Cell Int. 2020 Jan 13;20:16 PMID: 31956294
  16. Significance of tumor-infiltrating immunocytes for predicting prognosis of hepatitis B virus-related hepatocellular carcinoma.
    World J Gastroenterol. 2019 Sep 21;25(35):5266-5282 PMID: 31558872
  17. Gene expression markers of Tumor Infiltrating Leukocytes.
    J Immunother Cancer. 2017 Feb 21;5:18 PMID: 28239471
  18. Transcriptome-derived stromal and immune scores infer clinical outcomes of patients with cancer.
    Oncol Lett. 2018 Apr;15(4):4351-4357 PMID: 29541203
  19. Pan-Cancer Analyses Reveal Genomic Features of FOXM1 Overexpression in Cancer.
    Cancers (Basel). 2019 Feb 21;11(2): PMID: 30795624
  20. TFAP4 Promotes Hepatocellular Carcinoma Invasion and Metastasis via Activating the PI3K/AKT Signaling Pathway.
    Dis Markers. 2019 Jun 10;2019:7129214 PMID: 31281549
  21. Prioritizing targets for precision cancer medicine.
    Ann Oncol. 2014 Dec;25(12):2295-2303 PMID: 25344359
  22. Analysis of 100,000 human cancer genomes reveals the landscape of tumor mutational burden.
    Genome Med. 2017 Apr 19;9(1):34 PMID: 28420421
  23. Characterization of Hypoxia-associated Molecular Features to Aid Hypoxia-Targeted Therapy.
    Nat Metab. 2019 Apr;1(4):431-444 PMID: 31984309
  24. Eight key long non-coding RNAs predict hepatitis virus positive hepatocellular carcinoma as prognostic targets.
    World J Gastrointest Oncol. 2019 Nov 15;11(11):983-997 PMID: 31798779
  25. An integrative and comparative study of pan-cancer transcriptomes reveals distinct cancer common and specific signatures.
    Sci Rep. 2016 Sep 16;6:33398 PMID: 27633916
  26. AP‑4 predicts poor prognosis in non‑small cell lung cancer.
    Mol Med Rep. 2014 Jul;10(1):336-40 PMID: 24804973
  27. Somatic mutation in cancer and normal cells.
    Science. 2015 Sep 25;349(6255):1483-9 PMID: 26404825
  28. PD-1 Blockade in Tumors with Mismatch-Repair Deficiency.
    N Engl J Med. 2015 Nov 12;373(20):1979 PMID: 26559582
  29. AP4 modulated by the PI3K/AKT pathway promotes prostate cancer proliferation and metastasis of prostate cancer via upregulating L-plastin.
    Cell Death Dis. 2017 Oct 5;8(10):e3060 PMID: 28981098
  30. An overview of the basic helix-loop-helix proteins.
    Genome Biol. 2004;5(6):226 PMID: 15186484
  31. Genome-wide association analysis identifies genetic correlates of immune infiltrates in solid tumors.
    PLoS One. 2017 Jul 27;12(7):e0179726 PMID: 28749946
  32. Comprehensive analysis of prognostic immune-related genes in the tumor microenvironment of cutaneous melanoma.
    J Cell Physiol. 2020 Feb;235(2):1025-1035 PMID: 31240705
  33. Extended RAS Gene Mutation Testing in Metastatic Colorectal Carcinoma to Predict Response to Anti-Epidermal Growth Factor Receptor Monoclonal Antibody Therapy: American Society of Clinical Oncology Provisional Clinical Opinion Update 2015.
    J Clin Oncol. 2016 Jan 10;34(2):179-85 PMID: 26438111
  34. Inferring tumour purity and stromal and immune cell admixture from expression data.
    Nat Commun. 2013;4:2612 PMID: 24113773
  35. Pharmacogenomic agreement between two cancer cell line data sets.
    Nature. 2015 Dec 3;528(7580):84-7 PMID: 26570998
  36. Overexpression of transcription factor activating enhancer binding protein 4 (TFAP4) predicts poor prognosis for colorectal cancer patients.
    Exp Ther Med. 2017 Oct;14(4):3057-3061 PMID: 28912857
  37. Profiles of m6A RNA methylation regulators for the prognosis of hepatocellular carcinoma.
    Oncol Lett. 2020 Apr;19(4):3296-3306 PMID: 32256825
  38. The overexpression of AP-4 as a prognostic indicator for gastric carcinoma.
    Med Oncol. 2012 Jun;29(2):871-7 PMID: 21336989
  39. The evolving landscape of biomarkers for checkpoint inhibitor immunotherapy.
    Nat Rev Cancer. 2019 Mar;19(3):133-150 PMID: 30755690
  40. Integration of multiple networks and pathways identifies cancer driver genes in pan-cancer analysis.
    BMC Genomics. 2018 Jan 6;19(1):25 PMID: 29304754
  41. BRAF mutant colorectal cancer: prognosis, treatment, and new perspectives.
    Ann Oncol. 2017 Nov 1;28(11):2648-2657 PMID: 29045527
  42. Mining TCGA database for genes of prognostic value in glioblastoma microenvironment.
    Aging (Albany NY). 2018 Apr 16;10(4):592-605 PMID: 29676997
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Article Info
Journal
Journal of cellular and molecular medicine
Abbr.
J Cell Mol Med
ISSN
1582-4934
Published
2021-00-00
Epub
2020-00-29
Pages
2082-2097
Language
English
Region
England
NLM ID
101083777
PMCID
PMC7882993
Subset
IM
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