Home LiteratureArticle Details
PMID: 3122180 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Chicken liver TGGCA protein purified by preparative mobility shift electrophoresis (PMSE) shows a 36.8 to 29.8 kd microheterogeneity.

Nucleic acids research ·Vol. 15 ·No. 23 ·1987-12-10 ·Pages 9707-26

Rupp RA, Sippel AE

Abstract

The TGGCA protein, the chicken homologue of HeLa cell NF-I, was purified to homogeneity from liver tissue by a procedure which includes preparative mobility shift electrophoresis (PMSE) as the final step. PMSE was here adjusted for the isolation of the TGGCA protein, but can be used as a general method to characterize the protein moiety of specific DNA-binding proteins. The TGGCA protein is a family of 6 protein species, which show minor differences in molecular weight from 36.8kd to 29.8kd. This microheterogeneity differs from the size distribution reported for HeLa cell NF-I polypeptides. All species of the TGGCA protein bind identically to a synthetic DNA-binding site and appear to be highly related in primary structure. We discuss the possible functional importance of this microheterogeneity.

MeSH Terms
Acrylamides Animals Binding, Competitive Boric Acids CCAAT-Enhancer-Binding Proteins Chickens DNA-Binding Proteins/isolation & purification,metabolism Edetic Acid Electrophoresis, Polyacrylamide Gel/methods Liver/analysis Molecular Weight NFI Transcription Factors Nuclear Proteins Peptide Fragments/isolation & purification Sodium Dodecyl Sulfate Transcription Factors Tromethamine Y-Box-Binding Protein 1
Chemicals
Acrylamides Boric Acids CCAAT-Enhancer-Binding Proteins DNA-Binding Proteins NFI Transcription Factors Nuclear Proteins Peptide Fragments Transcription Factors Y-Box-Binding Protein 1 YBX1 protein, human Tromethamine Sodium Dodecyl Sulfate Edetic Acid boric acid
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Rupp R A
Zentrum für Molekulare Biologie, Universität Heidelberg, FRG.
Sippel A E
References (35)
35 references, click to expand
  1. Cleavage of structural proteins during the assembly of the head of bacteriophage T4.
    Nature. 1970 Aug 15;227(5259):680-5 PMID: 5432063
  2. Purification of a cellular, double-stranded DNA-binding protein required for initiation of adenovirus DNA replication by using a rapid filter-binding assay.
    Mol Cell Biol. 1986 May;6(5):1363-73 PMID: 3785168
  3. E. coli RNA polymerase interacts homologously with two different promoters.
    Cell. 1980 Jun;20(2):269-81 PMID: 6248238
  4. A gel electrophoresis method for quantifying the binding of proteins to specific DNA regions: application to components of the Escherichia coli lactose operon regulatory system.
    Nucleic Acids Res. 1981 Jul 10;9(13):3047-60 PMID: 6269071
  5. Equilibria and kinetics of lac repressor-operator interactions by polyacrylamide gel electrophoresis.
    Nucleic Acids Res. 1981 Dec 11;9(23):6505-25 PMID: 6275366
  6. Specific protein-DNA interaction at four sites flanking the chicken lysozyme gene.
    Cell. 1982 Sep;30(2):607-15 PMID: 6291778
  7. Adenovirus DNA replication in vitro: identification of a host factor that stimulates synthesis of the preterminal protein-dCMP complex.
    Proc Natl Acad Sci U S A. 1982 Nov;79(21):6438-42 PMID: 6216480
  8. Specific binding of a cellular DNA replication protein to the origin of replication of adenovirus DNA.
    Proc Natl Acad Sci U S A. 1983 Oct;80(20):6177-81 PMID: 6336326
  9. Structure and function of the adenovirus origin of replication.
    Cell. 1984 May;37(1):309-19 PMID: 6722875
  10. The role of the kappa enhancer and its binding factor NF-kappa B in the developmental regulation of kappa gene transcription.
    Cell. 1987 Jan 16;48(1):121-8 PMID: 3098435
  11. A cellular DNA-binding protein that activates eukaryotic transcription and DNA replication.
    Cell. 1987 Jan 16;48(1):79-89 PMID: 3024847
  12. Steroid-dependent interaction of transcription factors with the inducible promoter of mouse mammary tumor virus in vivo.
    Cell. 1987 Jan 30;48(2):261-70 PMID: 3026639
  13. Sequence-specific interactions between cellular DNA-binding proteins and the adenovirus origin of DNA replication.
    Mol Cell Biol. 1987 Feb;7(2):875-86 PMID: 3821731
  14. Inducible binding of a factor to the c-fos regulatory region.
    Proc Natl Acad Sci U S A. 1987 Mar;84(5):1272-6 PMID: 3029776
  15. Phorbol ester-inducible genes contain a common cis element recognized by a TPA-modulated trans-acting factor.
    Cell. 1987 Jun 19;49(6):729-39 PMID: 3034432
  16. Purified transcription factor AP-1 interacts with TPA-inducible enhancer elements.
    Cell. 1987 Jun 19;49(6):741-52 PMID: 3034433
  17. Contactpoint analysis of the HeLa nuclear factor I recognition site reveals symmetrical binding at one side of the DNA helix.
    EMBO J. 1987 Jan;6(1):161-8 PMID: 3034574
  18. Heat-inducible human factor that binds to a human hsp70 promoter.
    Mol Cell Biol. 1987 Apr;7(4):1530-4 PMID: 3600634
  19. Induction of sequence-specific binding of Drosophila heat shock activator protein without protein synthesis.
    Nature. 1987 Jun 25-Jul 1;327(6124):727-30 PMID: 3600771
  20. Binding of a nuclear protein to the cyclic-AMP response element of the somatostatin gene.
    Nature. 1987 Jul 9-15;328(6126):175-8 PMID: 2885756
  21. Mutually exclusive interaction of the CCAAT-binding factor and of a displacement protein with overlapping sequences of a histone gene promoter.
    Cell. 1987 Jul 31;50(3):347-59 PMID: 3607873
  22. Interaction of the TGGCA-binding protein with upstream sequences is required for efficient transcription of mouse mammary tumor virus.
    EMBO J. 1987 May;6(5):1355-60 PMID: 3038519
  23. DNAse footprinting: a simple method for the detection of protein-DNA binding specificity.
    Nucleic Acids Res. 1978 Sep;5(9):3157-70 PMID: 212715
  24. Sequencing end-labeled DNA with base-specific chemical cleavages.
    Methods Enzymol. 1980;65(1):499-560 PMID: 6246368
  25. The TGGCA-binding protein: a eukaryotic nuclear protein recognizing a symmetrical sequence on double-stranded linear DNA.
    Nucleic Acids Res. 1984 May 25;12(10):4295-311 PMID: 6328417
  26. A method for the quantitative recovery of protein in dilute solution in the presence of detergents and lipids.
    Anal Biochem. 1984 Apr;138(1):141-3 PMID: 6731838
  27. The TGGCA protein binds to the MMTV-LTR, the adenovirus origin of replication, and the BK virus enhancer.
    Nucleic Acids Res. 1985 Mar 25;13(6):2045-61 PMID: 2987840
  28. Purification of nuclear factor I by DNA recognition site affinity chromatography.
    J Biol Chem. 1986 Jan 25;261(3):1398-408 PMID: 3003068
  29. A sensitive and rapid gel retention assay for nuclear factor I and other DNA-binding proteins in crude nuclear extracts.
    Nucleic Acids Res. 1986 Feb 11;14(3):1303-17 PMID: 3513122
  30. Functional homology between the sequence-specific DNA-binding proteins nuclear factor I from HeLa cells and the TGGCA protein from chicken liver.
    EMBO J. 1986 Feb;5(2):381-6 PMID: 3709517
  31. The lysozyme enhancer: cell-specific activation of the chicken lysozyme gene by a far-upstream DNA element.
    EMBO J. 1986 Apr;5(4):719-24 PMID: 3458587
  32. Purification and biochemical characterization of the promoter-specific transcription factor, Sp1.
    Science. 1986 Oct 3;234(4772):47-52 PMID: 3529394
  33. A lymphoid-specific protein binding to the octamer motif of immunoglobulin genes.
    Nature. 1986 Oct 16-22;323(6089):640-3 PMID: 3095662
  34. Inducibility of kappa immunoglobulin enhancer-binding protein Nf-kappa B by a posttranslational mechanism.
    Cell. 1986 Dec 26;47(6):921-8 PMID: 3096580
  35. Distinct sequence elements involved in the glucocorticoid regulation of the mouse mammary tumor virus promoter identified by linker scanning mutagenesis.
    J Mol Biol. 1986 Aug 5;190(3):379-89 PMID: 3023641
Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
0305-1048
Published
1987-12-10
Pages
9707-26
Language
English
Region
England
NLM ID
0411011
PMCID
PMC306526
Subset
IM
Corrections
ErratumIn
-
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com