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PMID: 3025834 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, P.H.S.

Molecular analysis of cDNA clones and the corresponding genomic coding sequences of the Drosophila dunce+ gene, the structural gene for cAMP phosphodiesterase.

Chen CN, Denome S, Davis RL

Abstract

We have isolated and sequenced cDNA clones representing portions of the polyadenylylated transcripts of the dunce+ gene. These define an open reading frame of 1086 bases and some of the 5'- and 3'-untranslated regions of the transcripts. The deduced amino acid sequence is strikingly homologous to the amino acid sequence of a Ca2+/calmodulin-dependent cyclic nucleotide phosphodiesterase isolated from bovine brain and more weakly related to the predicted amino acid sequence of a yeast cAMP phosphodiesterase. These homologies, together with prior genetic and biochemical studies, provide unambiguous evidence that dunce+ codes for a phosphodiesterase. In addition, the dunce+ gene product shares a seven-amino acid sequence with a regulatory subunit of cAMP-dependent protein kinase that is predicted to be part of the cAMP binding site. We also identify a weak homology between a region of the dunce+ gene product and the egg-laying hormone precursor of Aplysia californica. The open reading frame is divided in the genome by four introns.

MeSH Terms
3',5'-Cyclic-AMP Phosphodiesterases/genetics Aplysia/genetics Base Sequence Binding Sites Cloning, Molecular Cyclic AMP/metabolism DNA/genetics Drosophila melanogaster/enzymology,genetics Genes Invertebrate Hormones/genetics Learning/physiology Protein Kinases/genetics Sequence Homology, Nucleic Acid
Chemicals
Invertebrate Hormones egg-laying hormone, Mollusca DNA Cyclic AMP Protein Kinases 3',5'-Cyclic-AMP Phosphodiesterases
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Chen C N
Denome S
Davis R L
References (34)
34 references, click to expand
  1. Structure of catabolite gene activator protein at 2.9-A resolution. Incorporation of amino acid sequence and interactions with cyclic AMP.
    J Biol Chem. 1982 Aug 25;257(16):9518-24 PMID: 6286624
  2. Cyclic nucleotide phosphodiesterases in larval brain of wild type and dunce mutant strains of Drosophila melanogaster: isoenzyme pattern and activation by Ca2+/calmodulin.
    Biochem Biophys Res Commun. 1983 Mar 16;111(2):652-8 PMID: 6301474
  3. Purification and characterization of phosphodiesterase activator from kidney. A lysosomal protease.
    J Biol Chem. 1979 Dec 10;254(23):11891-8 PMID: 227882
  4. Defective cyclic adenosine 3':5'-monophosphate phosphodiesterase in the Drosophila memory mutant dunce.
    J Neurosci. 1982 Oct;2(10):1347-58 PMID: 6288893
  5. Conditioning Mutations in DROSOPHILA MELANOGASTER Affect an Experience-Dependent Behavioral Modification in Courting Males.
    Genetics. 1984 Apr;106(4):613-23 PMID: 17246201
  6. Recognition of protein coding regions in DNA sequences.
    Nucleic Acids Res. 1982 Sep 11;10(17):5303-18 PMID: 7145702
  7. Purification and characterization of the gamma regulatory subunit of the cyclic GMP phosphodiesterase from retinal rod outer segments.
    J Biol Chem. 1982 Sep 25;257(18):11094-9 PMID: 6286681
  8. Reward learning in normal and mutant Drosophila.
    Proc Natl Acad Sci U S A. 1983 Mar;80(5):1482-6 PMID: 6572401
  9. A genetically distinct form of cyclic AMP phosphodiesterase associated with chromomere 3D4 in Drosophila melanogaster.
    Genetics. 1979 Mar;91(3):521-35 PMID: 222648
  10. Inhibition of Ca2+-activated cyclic nucleotide phosphodiesterase reaction by a heat-stable inhibitor protein from bovine brain.
    J Biol Chem. 1978 May 25;253(10):3575-80 PMID: 206547
  11. Genetic Analysis of Chromomere 3d4 in DROSOPHILA MELANOGASTER: The DUNCE and SPERM-AMOTILE Genes.
    Genetics. 1982 Apr;100(4):587-96 PMID: 17246072
  12. Graphic methods to determine the function of nucleic acid sequences.
    Nucleic Acids Res. 1984 Jan 11;12(1 Pt 2):521-38 PMID: 6364040
  13. Reversible and irreversible activation of cyclic nucleotide phosphodiesterase: separation of the regulatory and catalytic domains by limited proteolysis.
    Adv Cyclic Nucleotide Protein Phosphorylation Res. 1984;16:31-47 PMID: 6326530
  14. Cloning and characterization of the high-affinity cAMP phosphodiesterase of Saccharomyces cerevisiae.
    Proc Natl Acad Sci U S A. 1986 Dec;83(24):9303-7 PMID: 3025832
  15. Classical conditioning and retention in normal and mutant Drosophila melanogaster.
    J Comp Physiol A. 1985 Sep;157(2):263-77 PMID: 3939242
  16. Male courtship in Drosophila: the conditioned response to immature males and its genetic control.
    Genetics. 1982 Dec;102(4):771-82 PMID: 17246097
  17. Drosophila cyclic nucleotide phosphodiesterases.
    Adv Cyclic Nucleotide Protein Phosphorylation Res. 1984;16:393-402 PMID: 6326533
  18. Rapid and sensitive protein similarity searches.
    Science. 1985 Mar 22;227(4693):1435-41 PMID: 2983426
  19. Defect in cyclic AMP phosphodiesterase due to the dunce mutation of learning in Drosophila melanogaster.
    Nature. 1981 Jan 1;289(5793):79-81 PMID: 6256649
  20. Learning and memory in Drosophila, studied with mutants.
    Cold Spring Harb Symp Quant Biol. 1983;48 Pt 2:831-40 PMID: 6426849
  21. Isolation of the Drosophila melanogaster dunce chromosomal region and recombinational mapping of dunce sequences with restriction site polymorphisms as genetic markers.
    Mol Cell Biol. 1984 Feb;4(2):358-67 PMID: 6321960
  22. Compilation and analysis of sequences upstream from the translational start site in eukaryotic mRNAs.
    Nucleic Acids Res. 1984 Jan 25;12(2):857-72 PMID: 6694911
  23. Dunce mutants of Drosophila melanogaster: mutants defective in the cyclic AMP phosphodiesterase enzyme system.
    J Cell Biol. 1981 Jul;90(1):101-7 PMID: 6265472
  24. Guanosine cyclic 3',5'-phosphate dependent protein kinase, a chimeric protein homologous with two separate protein families.
    Biochemistry. 1984 Aug 28;23(18):4207-18 PMID: 6091741
  25. The Dunce gene of Drosophila: roles of Ca2+ and calmodulin in adenosine 3':5'-cyclic monophosphate-specific phosphodiesterase activity.
    J Neurosci. 1984 Feb;4(2):495-501 PMID: 6321697
  26. Mutations affect storage and use of memory differentially in Drosophila.
    Proc Natl Acad Sci U S A. 1983 Sep;80(17):5445-8 PMID: 16593363
  27. Amino acid sequence of the regulatory subunit of bovine type I adenosine cyclic 3',5'-phosphate dependent protein kinase.
    Biochemistry. 1984 Aug 28;23(18):4193-9 PMID: 6487597
  28. A single gene encodes multiple neuropeptides mediating a stereotyped behavior.
    Cell. 1983 Jan;32(1):7-22 PMID: 6687446
  29. Identification of a conserved domain among cyclic nucleotide phosphodiesterases from diverse species.
    Proc Natl Acad Sci U S A. 1986 Dec;83(24):9308-12 PMID: 3025833
  30. dunce, a mutant of Drosophila deficient in learning.
    Proc Natl Acad Sci U S A. 1976 May;73(5):1684-8 PMID: 818641
  31. The memory gene dunce+ encodes a remarkable set of RNAs with internal heterogeneity.
    Mol Cell Biol. 1986 May;6(5):1464-70 PMID: 2431279
  32. Three Drosophila mutations that block associative learning also affect habituation and sensitization.
    Proc Natl Acad Sci U S A. 1982 Jun;79(11):3646-50 PMID: 6808513
  33. The cAMP-binding domains of the regulatory subunit of cAMP-dependent protein kinase and the catabolite gene activator protein are homologous.
    Proc Natl Acad Sci U S A. 1982 Dec;79(24):7679-83 PMID: 6296845
  34. Identical short peptide sequences in unrelated proteins can have different conformations: a testing ground for theories of immune recognition.
    Proc Natl Acad Sci U S A. 1985 Aug;82(16):5255-9 PMID: 2410917
Article Info
Journal
Proceedings of the National Academy of Sciences of the United States of America
Abbr.
Proc Natl Acad Sci U S A
ISSN
0027-8424
Published
1986-12-00
Pages
9313-7
Language
English
Region
United States
NLM ID
7505876
PMCID
PMC387128
Subset
IM
Grants
NINDS NIH HHS · NS-19904 · United States
Databases
GENBANK
M14977, M14978, M14979, M14980, M14981, M14982
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