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PMID: 29587823 Published · epublish English Journal Article Research Support, Non-U.S. Gov't Review

Multiple functions of m6A RNA methylation in cancer.

Journal of hematology & oncology ·Vol. 11 ·No. 1 ·2018-00-27 ·Pages 48

Pan Y, Ma P, Liu Y, Li W, Shu Y

Abstract

First identified in 1974, m6A RNA methylation, which serves as a predominant internal modification of RNA in higher eukaryotes, has gained prodigious interest in recent years. Modifications of m6A are dynamic and reversible in mammalian cells, which have been proposed as another layer of epigenetic regulation similar to DNA and histone modifications. m6A RNA methylation is involved in all stages in the life cycle of RNA, ranging from RNA processing, through nuclear export, translation modulation to RNA degradation, which suggests its potential of influencing a plurality of aspects of RNA metabolism. All of the recent studies have pointed to a complicated regulation network of m6A modification in different tissues, cell lines, and space-time models. m6A methylation has been found to have an impact on tumor initiation and progression through various mechanisms. Furthermore, m6A RNA methylation has provided new opportunities for early stage diagnosis and treatment of cancers.Herein, we review the chemical basis of m6A RNA methylation, its multiple functions and potential significance in cancer.

Keywords
Cancer Mechanism RNA methylation m6A
MeSH Terms
Humans Methylation Neoplasms/genetics,metabolism RNA/genetics
Chemicals
RNA
Authors & Affiliations
5 authors, click to expand affiliations / ORCID
Pan Yutian
Department of Oncology, The First Affiliated Hospital of Nanjing Medical University, Nanjing, People's Republic of China.
Ma Pei
Department of Oncology, The First Affiliated Hospital of Nanjing Medical University, Nanjing, People's Republic of China.
Liu Yu
Department of Orthopaedics, Shanghai General Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, People's Republic of China.
Li Wei
Department of Oncology, The First Affiliated Hospital of Nanjing Medical University, Nanjing, People's Republic of China. real.lw@163.com. | Department of Oncology, Sir Run Run Hospital, Nanjing Medical University, Nanjing, People's Republic of China. real.lw@163.com.
Shu Yongqian
Department of Oncology, The First Affiliated Hospital of Nanjing Medical University, Nanjing, People's Republic of China. yongqianshu@hotmail.com. | Jiangsu Key Lab of Cancer Biomarkers, Prevention and Treatment, Collaborative Innovation Center for Cancer Personalized Medicine, Nanjing Medical University, Nanjing, People's Republic of China. yongqianshu@hotmail.com. | Department of Oncology, Sir Run Run Hospital, Nanjing Medical University, Nanjing, People's Republic of China. yongqianshu@hotmail.com.
References (102)
102 references, click to expand
  1. N(6)-methyladenosine Modulates Messenger RNA Translation Efficiency.
    Cell. 2015 Jun 4;161(6):1388-99 PMID: 26046440
  2. Association of type 2 diabetes susceptibility variants with advanced prostate cancer risk in the Breast and Prostate Cancer Cohort Consortium.
    Am J Epidemiol. 2012 Dec 15;176(12):1121-9 PMID: 23193118
  3. Single-nucleotide-resolution mapping of m6A and m6Am throughout the transcriptome.
    Nat Methods. 2015 Aug;12(8):767-72 PMID: 26121403
  4. Role of N6-methyladenosine modification in cancer.
    Curr Opin Genet Dev. 2018 Feb;48:1-7 PMID: 29040886
  5. Inhibitory effect of S-adenosylmethionine on the growth of human gastric cancer cells in vivo and in vitro.
    Chin J Cancer. 2010 Aug;29(8):752-60 PMID: 20663323
  6. YTHDF3 facilitates translation and decay of N6-methyladenosine-modified RNA.
    Cell Res. 2017 Mar;27(3):315-328 PMID: 28106072
  7. WTAP is a novel oncogenic protein in acute myeloid leukemia.
    Leukemia. 2014 May;28(5):1171-4 PMID: 24413322
  8. The RNA Modification Database, RNAMDB: 2011 update.
    Nucleic Acids Res. 2011 Jan;39(Database issue):D195-201 PMID: 21071406
  9. Comprehensive analysis of mRNA methylation reveals enrichment in 3' UTRs and near stop codons.
    Cell. 2012 Jun 22;149(7):1635-46 PMID: 22608085
  10. Determination of DNA and RNA Methylation in Circulating Tumor Cells by Mass Spectrometry.
    Anal Chem. 2016 Jan 19;88(2):1378-84 PMID: 26707930
  11. Meclofenamic acid selectively inhibits FTO demethylation of m6A over ALKBH5.
    Nucleic Acids Res. 2015 Jan;43(1):373-84 PMID: 25452335
  12. S-adenosyl L-methionine inhibits azoxymethane-induced colonic aberrant crypt foci in F344 rats and suppresses human colon cancer Caco-2 cell growth in 3D culture.
    Int J Cancer. 2008 Jan 1;122(1):25-30 PMID: 17724725
  13. ALKBH5 is a mammalian RNA demethylase that impacts RNA metabolism and mouse fertility.
    Mol Cell. 2013 Jan 10;49(1):18-29 PMID: 23177736
  14. 5' UTR m(6)A Promotes Cap-Independent Translation.
    Cell. 2015 Nov 5;163(4):999-1010 PMID: 26593424
  15. N6-methyladenosine in nuclear RNA is a major substrate of the obesity-associated FTO.
    Nat Chem Biol. 2011 Oct 16;7(12 ):885-7 PMID: 22002720
  16. Correlation between histone lysine methylation and developmental changes at the chicken beta-globin locus.
    Science. 2001 Sep 28;293(5539):2453-5 PMID: 11498546
  17. N6-methyladenosine-dependent regulation of messenger RNA stability.
    Nature. 2014 Jan 2;505(7481):117-20 PMID: 24284625
  18. Systems-based analysis of modified tRNA bases.
    Angew Chem Int Ed Engl. 2011 Oct 4;50(41):9739-42 PMID: 21882308
  19. HBXIP-elevated methyltransferase METTL3 promotes the progression of breast cancer via inhibiting tumor suppressor let-7g.
    Cancer Lett. 2018 Feb 28;415:11-19 PMID: 29174803
  20. EZH2 protects glioma stem cells from radiation-induced cell death in a MELK/FOXM1-dependent manner.
    Stem Cell Reports. 2015 Feb 10;4(2):226-38 PMID: 25601206
  21. SOCS-1, a negative regulator of the JAK/STAT pathway, is silenced by methylation in human hepatocellular carcinoma and shows growth-suppression activity.
    Nat Genet. 2001 May;28(1):29-35 PMID: 11326271
  22. Crystal structure of the YTH domain of YTHDF2 reveals mechanism for recognition of N6-methyladenosine.
    Cell Res. 2014 Dec;24(12):1493-6 PMID: 25412661
  23. Involvement of a human gene related to the Drosophila spen gene in the recurrent t(1;22) translocation of acute megakaryocytic leukemia.
    Proc Natl Acad Sci U S A. 2001 May 8;98(10):5776-9 PMID: 11344311
  24. Retinoids and myelomonocytic growth factors cooperatively activate RARA and induce human myeloid leukemia cell differentiation via MAP kinase pathways.
    Blood. 2005 Jan 1;105(1):341-9 PMID: 15339853
  25. Identification of an MSI-H tumor-specific cytotoxic T cell epitope generated by the (-1) frame of U79260(FTO).
    J Biomed Biotechnol. 2010;2010:841451 PMID: 20339516
  26. ASB-2 inhibits growth and promotes commitment in myeloid leukemia cells.
    J Biol Chem. 2002 Jan 4;277(1):218-24 PMID: 11682484
  27. ADAMs in cancer cell proliferation and progression.
    Cancer Sci. 2007 May;98(5):621-8 PMID: 17355265
  28. Solution structure of the YTH domain in complex with N6-methyladenosine RNA: a reader of methylated RNA.
    Nucleic Acids Res. 2014 Dec 16;42(22):13911-9 PMID: 25389274
  29. Metalloproteinase disintegrins ADAM8 and ADAM19 are highly regulated in human primary brain tumors and their expression levels and activities are associated with invasiveness.
    J Neuropathol Exp Neurol. 2006 May;65(5):516-27 PMID: 16772875
  30. The role of the fat mass and obesity associated gene (FTO) in breast cancer risk.
    BMC Med Genet. 2011 Apr 13;12 :52 PMID: 21489227
  31. Proteinase-activated receptors (PARs) - focus on receptor-receptor-interactions and their physiological and pathophysiological impact.
    Cell Commun Signal. 2013 Nov 11;11:86 PMID: 24215724
  32. Integrative regulatory mapping indicates that the RNA-binding protein HuR couples pre-mRNA processing and mRNA stability.
    Mol Cell. 2011 Aug 5;43(3):327-39 PMID: 21723170
  33. m6A RNA Methylation Regulates the Self-Renewal and Tumorigenesis of Glioblastoma Stem Cells.
    Cell Rep. 2017 Mar 14;18(11):2622-2634 PMID: 28297667
  34. Transitions in distinct histone H3 methylation patterns at the heterochromatin domain boundaries.
    Science. 2001 Aug 10;293(5532):1150-5 PMID: 11498594
  35. Messenger RNA modifications: Form, distribution, and function.
    Science. 2016 Jun 17;352(6292):1408-12 PMID: 27313037
  36. Evolution of the cancer stem cell model.
    Cell Stem Cell. 2014 Mar 6;14(3):275-91 PMID: 24607403
  37. R-2HG Exhibits Anti-tumor Activity by Targeting FTO/m6A/MYC/CEBPA Signaling.
    Cell. 2018 Jan 11;172(1-2):90-105.e23 PMID: 29249359
  38. HNRNPA2B1 Is a Mediator of m(6)A-Dependent Nuclear RNA Processing Events.
    Cell. 2015 Sep 10;162(6):1299-308 PMID: 26321680
  39. High-resolution profiling of histone methylations in the human genome.
    Cell. 2007 May 18;129(4):823-37 PMID: 17512414
  40. Histone modifications in transcriptional regulation.
    Curr Opin Genet Dev. 2002 Apr;12(2):142-8 PMID: 11893486
  41. Association study of type 2 diabetes genetic susceptibility variants and risk of pancreatic cancer: an analysis of PanScan-I data.
    Cancer Causes Control. 2011 Jun;22(6):877-83 PMID: 21445555
  42. Transcriptome-wide analysis of regulatory interactions of the RNA-binding protein HuR.
    Mol Cell. 2011 Aug 5;43(3):340-52 PMID: 21723171
  43. The application of Toll like receptors for cancer therapy.
    Int J Biol Sci. 2010 Nov 03;6(7):675-81 PMID: 21060729
  44. A METTL3-METTL14 complex mediates mammalian nuclear RNA N6-adenosine methylation.
    Nat Chem Biol. 2014 Feb;10(2):93-5 PMID: 24316715
  45. The birth of the Epitranscriptome: deciphering the function of RNA modifications.
    Genome Biol. 2012 Oct 31;13(10):175 PMID: 23113984
  46. N(6)-methyladenosine-dependent RNA structural switches regulate RNA-protein interactions.
    Nature. 2015 Feb 26;518(7540):560-4 PMID: 25719671
  47. Hallmarks of cancer: the next generation.
    Cell. 2011 Mar 4;144(5):646-74 PMID: 21376230
  48. METTL14 suppresses the metastatic potential of hepatocellular carcinoma by modulating N6 -methyladenosine-dependent primary MicroRNA processing.
    Hepatology. 2017 Feb;65(2):529-543 PMID: 27774652
  49. YTH domain family 2 orchestrates epithelial-mesenchymal transition/proliferation dichotomy in pancreatic cancer cells.
    Cell Cycle. 2017;16(23 ):2259-2271 PMID: 29135329
  50. Nuclear m(6)A Reader YTHDC1 Regulates mRNA Splicing.
    Mol Cell. 2016 Feb 18;61(4):507-519 PMID: 26876937
  51. m(6)A RNA methylation is regulated by microRNAs and promotes reprogramming to pluripotency.
    Cell Stem Cell. 2015 Mar 5;16(3):289-301 PMID: 25683224
  52. Dynamic m(6)A mRNA methylation directs translational control of heat shock response.
    Nature. 2015 Oct 22;526(7574):591-4 PMID: 26458103
  53. The N6-methyladenosine (m6A)-forming enzyme METTL3 controls myeloid differentiation of normal hematopoietic and leukemia cells.
    Nat Med. 2017 Nov;23 (11):1369-1376 PMID: 28920958
  54. Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq.
    Nature. 2012 Apr 29;485(7397):201-6 PMID: 22575960
  55. Analysis of CLIP and iCLIP methods for nucleotide-resolution studies of protein-RNA interactions.
    Genome Biol. 2012 Aug 03;13(8):R67 PMID: 22863408
  56. Cytoplasmic m6A reader YTHDF3 promotes mRNA translation.
    Cell Res. 2017 Mar;27(3):444-447 PMID: 28106076
  57. Hypoxia--a key regulatory factor in tumour growth.
    Nat Rev Cancer. 2002 Jan;2(1):38-47 PMID: 11902584
  58. Hypoxia induces the breast cancer stem cell phenotype by HIF-dependent and ALKBH5-mediated m⁶A-demethylation of NANOG mRNA.
    Proc Natl Acad Sci U S A. 2016 Apr 5;113(14 ):E2047-56 PMID: 27001847
  59. N6-methyladenosine marks primary microRNAs for processing.
    Nature. 2015 Mar 26;519(7544):482-5 PMID: 25799998
  60. m6A Demethylase ALKBH5 Maintains Tumorigenicity of Glioblastoma Stem-like Cells by Sustaining FOXM1 Expression and Cell Proliferation Program.
    Cancer Cell. 2017 Apr 10;31(4):591-606.e6 PMID: 28344040
  61. Proteinase-activated receptor 2 promotes cancer cell migration through RNA methylation-mediated repression of miR-125b.
    J Biol Chem. 2015 Oct 30;290(44):26627-37 PMID: 26354435
  62. Reading RNA methylation codes through methyl-specific binding proteins.
    RNA Biol. 2014;11(6):669-72 PMID: 24823649
  63. Real-Time Imaging Reveals Local, Transient Vascular Permeability, and Tumor Cell Intravasation Stimulated by TIE2hi Macrophage-Derived VEGFA.
    Cancer Discov. 2015 Sep;5(9):932-43 PMID: 26269515
  64. Identification of methylated nucleosides in messenger RNA from Novikoff hepatoma cells.
    Proc Natl Acad Sci U S A. 1974 Oct;71(10):3971-5 PMID: 4372599
  65. m6A mRNA methylation controls T cell homeostasis by targeting the IL-7/STAT5/SOCS pathways.
    Nature. 2017 Aug 17;548(7667):338-342 PMID: 28792938
  66. Synthesis of a FTO inhibitor with anticonvulsant activity.
    ACS Chem Neurosci. 2014 Aug 20;5(8):658-65 PMID: 24834807
  67. Lineage restriction of the RARalpha gene expression in myeloid differentiation.
    Blood. 2001 Oct 15;98 (8):2563-7 PMID: 11588055
  68. Reversal of the hypomethylation status of urokinase (uPA) promoter blocks breast cancer growth and metastasis.
    J Biol Chem. 2004 Jul 23;279(30):31735-44 PMID: 15150277
  69. Structural basis for selective binding of m6A RNA by the YTHDC1 YTH domain.
    Nat Chem Biol. 2014 Nov;10 (11):927-9 PMID: 25242552
  70. Tumor hypoxia and malignant progression.
    Methods Enzymol. 2004;381:335-54 PMID: 15063685
  71. DNA methylation and cancer development: molecular mechanism.
    Cell Biochem Biophys. 2013 Nov;67(2):501-13 PMID: 23508887
  72. FoxM1 promotes β-catenin nuclear localization and controls Wnt target-gene expression and glioma tumorigenesis.
    Cancer Cell. 2011 Oct 18;20(4):427-42 PMID: 22014570
  73. Methylated nucleotides block 5' terminus of HeLa cell messenger RNA.
    Cell. 1975 Apr;4(4):379-86 PMID: 164293
  74. Evaluating genome-wide association study-identified breast cancer risk variants in African-American women.
    PLoS One. 2013 Apr 08;8(4):e58350 PMID: 23593120
  75. Role of the N6-methyladenosine RNA mark in gene regulation and its implications on development and disease.
    Brief Funct Genomics. 2015 May;14(3):169-79 PMID: 25305461
  76. RNA methylation regulates hematopoietic stem and progenitor cell development.
    J Genet Genomics. 2017 Oct 20;44(10 ):473-474 PMID: 29037987
  77. Hypoxia-inducible factors regulate pluripotency factor expression by ZNF217- and ALKBH5-mediated modulation of RNA methylation in breast cancer cells.
    Oncotarget. 2016 Oct 4;7(40):64527-64542 PMID: 27590511
  78. ATRA-regulated Asb-2 gene induced in differentiation of HL-60 leukemia cells.
    FEBS Lett. 2001 Sep 14;505(2):223-8 PMID: 11566180
  79. METTL14 Inhibits Hematopoietic Stem/Progenitor Differentiation and Promotes Leukemogenesis via mRNA m6A Modification.
    Cell Stem Cell. 2018 Feb 1;22(2):191-205.e9 PMID: 29290617
  80. FoxM1: a potential drug target for glioma.
    Future Oncol. 2012 Mar;8(3):223-6 PMID: 22409458
  81. Preferential Iron Trafficking Characterizes Glioblastoma Stem-like Cells.
    Cancer Cell. 2015 Oct 12;28(4):441-455 PMID: 26461092
  82. A G{alpha}i-GIV molecular complex binds epidermal growth factor receptor and determines whether cells migrate or proliferate.
    Mol Biol Cell. 2010 Jul 1;21(13):2338-54 PMID: 20462955
  83. RNA N6-methyladenosine methyltransferase-like 3 promotes liver cancer progression through YTHDF2-dependent posttranscriptional silencing of SOCS2.
    Hepatology. 2017 Nov 24;:null PMID: 29171881
  84. S-adenosylmethionine in the chemoprevention and treatment of hepatocellular carcinoma in a rat model.
    Hepatology. 2009 Aug;50(2):462-71 PMID: 19444874
  85. m6A in mRNA: An Ancient Mechanism for Fine-Tuning Gene Expression.
    Trends Genet. 2017 Jun;33(6):380-390 PMID: 28499622
  86. Prospective identification of tumorigenic breast cancer cells.
    Proc Natl Acad Sci U S A. 2003 Apr 1;100(7):3983-8 PMID: 12629218
  87. Widespread occurrence of 5-methylcytosine in human coding and non-coding RNA.
    Nucleic Acids Res. 2012 Jun;40(11):5023-33 PMID: 22344696
  88. m6A potentiates Sxl alternative pre-mRNA splicing for robust Drosophila sex determination.
    Nature. 2016 Dec 8;540(7632):301-304 PMID: 27919081
  89. TATA box and Sp1 sites mediate the activation of c-myc promoter P1 by immunoglobulin kappa enhancers.
    Gene Expr. 1996;6(2):113-27 PMID: 8979089
  90. Suppression of RNA recognition by Toll-like receptors: the impact of nucleoside modification and the evolutionary origin of RNA.
    Immunity. 2005 Aug;23(2):165-75 PMID: 16111635
  91. The m(6)A Methyltransferase METTL3 Promotes Translation in Human Cancer Cells.
    Mol Cell. 2016 May 5;62(3):335-345 PMID: 27117702
  92. Methylation by NSun2 represses the levels and function of microRNA 125b.
    Mol Cell Biol. 2014 Oct 1;34(19):3630-41 PMID: 25047833
  93. The thermodynamic stability of RNA duplexes and hairpins containing N6-alkyladenosines and 2-methylthio-N6-alkyladenosines.
    Nucleic Acids Res. 2003 Aug 1;31(15):4472-80 PMID: 12888507
  94. Anti-inflammatory drugs and prediction of new structures by comparative analysis.
    Antiinflamm Antiallergy Agents Med Chem. 2012;11(2):151-60 PMID: 22946893
  95. FTO Plays an Oncogenic Role in Acute Myeloid Leukemia as a N6-Methyladenosine RNA Demethylase.
    Cancer Cell. 2017 Jan 9;31(1):127-141 PMID: 28017614
  96. Promoter-bound METTL3 maintains myeloid leukaemia by m6A-dependent translation control.
    Nature. 2017 Dec 7;552(7683):126-131 PMID: 29186125
  97. Treating cancer with selective CDK4/6 inhibitors.
    Nat Rev Clin Oncol. 2016 Jul;13(7):417-30 PMID: 27030077
  98. Chemoprevention of hepatocarcinogenesis: S-adenosyl-L-methionine.
    Alcohol. 2002 Jul;27(3):193-8 PMID: 12163149
  99. Antisense transcription in the mammalian transcriptome.
    Science. 2005 Sep 2;309(5740):1564-6 PMID: 16141073
  100. Epitranscriptomics: regulation of mRNA metabolism through modifications.
    Curr Opin Chem Biol. 2017 Dec;41:93-98 PMID: 29125941
  101. Grand challenge commentary: RNA epigenetics?
    Nat Chem Biol. 2010 Dec;6(12):863-5 PMID: 21079590
  102. The shunt problem: control of functional shunting in normal and tumour vasculature.
    Nat Rev Cancer. 2010 Aug;10(8):587-93 PMID: 20631803
Article Info
Journal
Journal of hematology & oncology
Abbr.
J Hematol Oncol
ISSN
1756-8722
Published
2018-00-27
Epub
2018-00-27
Pages
48
Language
English
Region
England
NLM ID
101468937
PMCID
PMC5870302
Subset
IM
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