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PMID: 28017614 Published · ppublish English Journal Article

FTO Plays an Oncogenic Role in Acute Myeloid Leukemia as a N6-Methyladenosine RNA Demethylase.

Cancer cell ·Vol. 31 ·No. 1 ·2017-00-09 ·Pages 127-141

Li Z, Weng H, Su R, Weng X, Zuo Z, Li C, Huang H, Nachtergaele S, Dong L, Hu C, Qin X, Tang L, Wang Y, Hong GM, Huang H, Wang X, Chen P, Gurbuxani S, Arnovitz S, Li Y, Li S, Strong J, Neilly MB, Larson RA, Jiang X, Zhang P, Jin J, He C, Chen J

Abstract

N6-Methyladenosine (m6A) represents the most prevalent internal modification in mammalian mRNAs. Despite its functional importance in various fundamental bioprocesses, the studies of m6A in cancer have been limited. Here we show that FTO, as an m6A demethylase, plays a critical oncogenic role in acute myeloid leukemia (AML). FTO is highly expressed in AMLs with t(11q23)/MLL rearrangements, t(15;17)/PML-RARA, FLT3-ITD, and/or NPM1 mutations. FTO enhances leukemic oncogene-mediated cell transformation and leukemogenesis, and inhibits all-trans-retinoic acid (ATRA)-induced AML cell differentiation, through regulating expression of targets such as ASB2 and RARA by reducing m6A levels in these mRNA transcripts. Collectively, our study demonstrates the functional importance of the m6A methylation and the corresponding proteins in cancer, and provides profound insights into leukemogenesis and drug response.

Keywords
AML ASB2 ATRA FTO RARA RNA modification RNA stability cell differentiation leukemogenesis m6A
MeSH Terms
Adenosine/analogs & derivatives,metabolism Alpha-Ketoglutarate-Dependent Dioxygenase FTO/physiology Apoptosis Cell Proliferation Humans Leukemia, Myeloid, Acute/drug therapy,enzymology,etiology,pathology Methylation Nucleophosmin Retinoic Acid Receptor alpha/physiology Suppressor of Cytokine Signaling Proteins/physiology Transcriptome Tretinoin/pharmacology
Chemicals
ASB2 protein, human NPM1 protein, human RARA protein, human Retinoic Acid Receptor alpha Suppressor of Cytokine Signaling Proteins Nucleophosmin Tretinoin N-methyladenosine Alpha-Ketoglutarate-Dependent Dioxygenase FTO FTO protein, human Adenosine
Authors & Affiliations
29 authors, click to expand affiliations / ORCID
Li Zejuan
Section of Hematology/Oncology, Department of Medicine, University of Chicago, Chicago, IL 60637, USA; Department of Human Genetics, University of Chicago, Chicago, IL 60637, USA.
Weng Hengyou
Section of Hematology/Oncology, Department of Medicine, University of Chicago, Chicago, IL 60637, USA; Department of Cancer Biology, University of Cincinnati College of Medicine, Cincinnati, OH 45219, USA.
Su Rui
Department of Cancer Biology, University of Cincinnati College of Medicine, Cincinnati, OH 45219, USA.
Weng Xiaocheng
Departments of Chemistry, Biochemistry and Molecular Biology, Institute for Biophysical Dynamics, Howard Hughes Medical Institute, University of Chicago, Chicago, IL 60637, USA; College of Chemistry and Molecular Sciences, Key Laboratory of Biomedical Polymers of Ministry of Education, Wuhan University, Hubei, Wuhan 430072, PR China.
Zuo Zhixiang
Section of Hematology/Oncology, Department of Medicine, University of Chicago, Chicago, IL 60637, USA; Department of Cancer Biology, University of Cincinnati College of Medicine, Cincinnati, OH 45219, USA; Sun Yat-sen University Cancer Center, State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Guangzhou 510060, China.
Li Chenying
Department of Cancer Biology, University of Cincinnati College of Medicine, Cincinnati, OH 45219, USA; Key Laboratory of Hematopoietic Malignancies, Department of Hematology, The First Affiliated Hospital of Zhejiang University, Hangzhou, Zhejiang 310003, China.
Huang Huilin
Department of Cancer Biology, University of Cincinnati College of Medicine, Cincinnati, OH 45219, USA.
Nachtergaele Sigrid
Departments of Chemistry, Biochemistry and Molecular Biology, Institute for Biophysical Dynamics, Howard Hughes Medical Institute, University of Chicago, Chicago, IL 60637, USA.
Dong Lei
Department of Cancer Biology, University of Cincinnati College of Medicine, Cincinnati, OH 45219, USA.
Hu Chao
Section of Hematology/Oncology, Department of Medicine, University of Chicago, Chicago, IL 60637, USA; Department of Cancer Biology, University of Cincinnati College of Medicine, Cincinnati, OH 45219, USA; Key Laboratory of Hematopoietic Malignancies, Department of Hematology, The First Affiliated Hospital of Zhejiang University, Hangzhou, Zhejiang 310003, China.
Qin Xi
Department of Cancer Biology, University of Cincinnati College of Medicine, Cincinnati, OH 45219, USA.
Tang Lichun
Department of Molecular Physiology and Biophysics, Baylor College of Medicine, Houston, TX 77030, USA.
Wang Yungui
Section of Hematology/Oncology, Department of Medicine, University of Chicago, Chicago, IL 60637, USA; Department of Cancer Biology, University of Cincinnati College of Medicine, Cincinnati, OH 45219, USA; Key Laboratory of Hematopoietic Malignancies, Department of Hematology, The First Affiliated Hospital of Zhejiang University, Hangzhou, Zhejiang 310003, China.
Hong Gia-Ming
Section of Hematology/Oncology, Department of Medicine, University of Chicago, Chicago, IL 60637, USA.
Huang Hao
Section of Hematology/Oncology, Department of Medicine, University of Chicago, Chicago, IL 60637, USA.
Wang Xiao
Departments of Chemistry, Biochemistry and Molecular Biology, Institute for Biophysical Dynamics, Howard Hughes Medical Institute, University of Chicago, Chicago, IL 60637, USA.
Chen Ping
Section of Hematology/Oncology, Department of Medicine, University of Chicago, Chicago, IL 60637, USA.
Gurbuxani Sandeep
Department of Pathology, University of Chicago, Chicago, IL 60637, USA.
Arnovitz Stephen
Section of Hematology/Oncology, Department of Medicine, University of Chicago, Chicago, IL 60637, USA.
Li Yuanyuan
Section of Hematology/Oncology, Department of Medicine, University of Chicago, Chicago, IL 60637, USA.
Li Shenglai
Section of Hematology/Oncology, Department of Medicine, University of Chicago, Chicago, IL 60637, USA.
Strong Jennifer
Department of Cancer Biology, University of Cincinnati College of Medicine, Cincinnati, OH 45219, USA.
Neilly Mary Beth
Section of Hematology/Oncology, Department of Medicine, University of Chicago, Chicago, IL 60637, USA.
Larson Richard A
Section of Hematology/Oncology, Department of Medicine, University of Chicago, Chicago, IL 60637, USA.
Jiang Xi
Section of Hematology/Oncology, Department of Medicine, University of Chicago, Chicago, IL 60637, USA; Department of Cancer Biology, University of Cincinnati College of Medicine, Cincinnati, OH 45219, USA.
Zhang Pumin
Department of Molecular Physiology and Biophysics, Baylor College of Medicine, Houston, TX 77030, USA.
Jin Jie
Key Laboratory of Hematopoietic Malignancies, Department of Hematology, The First Affiliated Hospital of Zhejiang University, Hangzhou, Zhejiang 310003, China.
He Chuan
Departments of Chemistry, Biochemistry and Molecular Biology, Institute for Biophysical Dynamics, Howard Hughes Medical Institute, University of Chicago, Chicago, IL 60637, USA. Electronic address: chuanhe@uchicago.edu.
Chen Jianjun
Section of Hematology/Oncology, Department of Medicine, University of Chicago, Chicago, IL 60637, USA; Department of Cancer Biology, University of Cincinnati College of Medicine, Cincinnati, OH 45219, USA. Electronic address: chen3jj@ucmail.uc.edu.
Conflict of Interest

The authors declare no competing financial interests.

References (73)
73 references, click to expand
  1. FTO-dependent demethylation of N6-methyladenosine regulates mRNA splicing and is required for adipogenesis.
    Cell Res. 2014 Dec;24(12 ):1403-19 PMID: 25412662
  2. N(6)-methyladenosine Modulates Messenger RNA Translation Efficiency.
    Cell. 2015 Jun 4;161(6):1388-99 PMID: 26046440
  3. Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.
    Proc Natl Acad Sci U S A. 2005 Oct 25;102(43):15545-50 PMID: 16199517
  4. The fat mass and obesity associated gene (Fto) regulates activity of the dopaminergic midbrain circuitry.
    Nat Neurosci. 2013 Aug;16(8):1042-8 PMID: 23817550
  5. Increased incidence of non-Hodgkin lymphoma, leukemia, and myeloma in patients with diabetes mellitus type 2: a meta-analysis of observational studies.
    Blood. 2012 May 24;119(21):4845-50 PMID: 22496152
  6. Acute Myeloid Leukemia.
    N Engl J Med. 2015 Sep 17;373(12):1136-52 PMID: 26376137
  7. Variation in FTO contributes to childhood obesity and severe adult obesity.
    Nat Genet. 2007 Jun;39(6):724-6 PMID: 17496892
  8. Comprehensive analysis of mRNA methylation reveals enrichment in 3' UTRs and near stop codons.
    Cell. 2012 Jun 22;149(7):1635-46 PMID: 22608085
  9. Purification and cDNA cloning of the AdoMet-binding subunit of the human mRNA (N6-adenosine)-methyltransferase.
    RNA. 1997 Nov;3(11):1233-47 PMID: 9409616
  10. Genome-wide association scan shows genetic variants in the FTO gene are associated with obesity-related traits.
    PLoS Genet. 2007 Jul;3(7):e115 PMID: 17658951
  11. ALKBH5 is a mammalian RNA demethylase that impacts RNA metabolism and mouse fertility.
    Mol Cell. 2013 Jan 10;49(1):18-29 PMID: 23177736
  12. 5' UTR m(6)A Promotes Cap-Independent Translation.
    Cell. 2015 Nov 5;163(4):999-1010 PMID: 26593424
  13. N6-methyladenosine in nuclear RNA is a major substrate of the obesity-associated FTO.
    Nat Chem Biol. 2011 Oct 16;7(12 ):885-7 PMID: 22002720
  14. Sensitivity of MLL-rearranged AML cells to all-trans retinoic acid is associated with the level of H3K4me2 in the RARα promoter region.
    Blood Cancer J. 2014 Apr 25;4:e205 PMID: 24769646
  15. N6-methyladenosine-dependent regulation of messenger RNA stability.
    Nature. 2014 Jan 2;505(7481):117-20 PMID: 24284625
  16. miR-22 has a potent anti-tumour role with therapeutic potential in acute myeloid leukaemia.
    Nat Commun. 2016 Apr 26;7:11452 PMID: 27116251
  17. Gene mutations and response to treatment with all-trans retinoic acid in elderly patients with acute myeloid leukemia. Results from the AMLSG Trial AML HD98B.
    Haematologica. 2009 Jan;94(1):54-60 PMID: 19059939
  18. Retinoids and myelomonocytic growth factors cooperatively activate RARA and induce human myeloid leukemia cell differentiation via MAP kinase pathways.
    Blood. 2005 Jan 1;105(1):341-9 PMID: 15339853
  19. Granulocytic differentiation of leukemic cells with t(9;11)(p22;q23) induced by all-trans-retinoic acid.
    Leuk Lymphoma. 2004 May;45(5):1017-24 PMID: 15291362
  20. Synergy against PML-RARa: targeting transcription, proteolysis, differentiation, and self-renewal in acute promyelocytic leukemia.
    J Exp Med. 2013 Dec 16;210(13):2793-802 PMID: 24344243
  21. ASB-2 inhibits growth and promotes commitment in myeloid leukemia cells.
    J Biol Chem. 2002 Jan 4;277(1):218-24 PMID: 11682484
  22. AML cells are differentially sensitive to chemotherapy treatment in a human xenograft model.
    Blood. 2013 Mar 21;121(12):e90-7 PMID: 23349390
  23. ECSASB2 mediates MLL degradation during hematopoietic differentiation.
    Blood. 2012 Feb 2;119(5):1151-61 PMID: 22174154
  24. Acute promyelocytic leukemia: from highly fatal to highly curable.
    Blood. 2008 Mar 1;111(5):2505-15 PMID: 18299451
  25. RNA N6-methyladenosine methylation in post-transcriptional gene expression regulation.
    Genes Dev. 2015 Jul 1;29(13):1343-55 PMID: 26159994
  26. A common variant in the FTO gene is associated with body mass index and predisposes to childhood and adult obesity.
    Science. 2007 May 11;316(5826):889-94 PMID: 17434869
  27. NADPH-cytochrome P450 reductase is regulated by all-trans retinoic acid and by 1,25-dihydroxyvitamin D3 in human acute myeloid leukemia cells.
    PLoS One. 2014 Mar 18;9(3):e91752 PMID: 24642534
  28. Inactivation of the Fto gene protects from obesity.
    Nature. 2009 Apr 16;458(7240):894-8 PMID: 19234441
  29. A METTL3-METTL14 complex mediates mammalian nuclear RNA N6-adenosine methylation.
    Nat Chem Biol. 2014 Feb;10(2):93-5 PMID: 24316715
  30. N(6)-methyladenosine-dependent RNA structural switches regulate RNA-protein interactions.
    Nature. 2015 Feb 26;518(7540):560-4 PMID: 25719671
  31. Molecular heterogeneity and prognostic biomarkers in adults with acute myeloid leukemia and normal cytogenetics.
    Curr Opin Hematol. 2005 Jan;12(1):68-75 PMID: 15604894
  32. N6-methyladenosine modification destabilizes developmental regulators in embryonic stem cells.
    Nat Cell Biol. 2014 Feb;16(2):191-8 PMID: 24394384
  33. m(6)A RNA methylation is regulated by microRNAs and promotes reprogramming to pluripotency.
    Cell Stem Cell. 2015 Mar 5;16(3):289-301 PMID: 25683224
  34. Dynamic m(6)A mRNA methylation directs translational control of heat shock response.
    Nature. 2015 Oct 22;526(7574):591-4 PMID: 26458103
  35. Model-based analysis of ChIP-Seq (MACS).
    Genome Biol. 2008;9(9):R137 PMID: 18798982
  36. miR-196b directly targets both HOXA9/MEIS1 oncogenes and FAS tumour suppressor in MLL-rearranged leukaemia.
    Nat Commun. 2012 Feb 21;3:688 PMID: 22353710
  37. Notch1-induced delay of human hematopoietic progenitor cell differentiation is associated with altered cell cycle kinetics.
    Blood. 1999 Feb 1;93(3):838-48 PMID: 9920832
  38. Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq.
    Nature. 2012 Apr 29;485(7397):201-6 PMID: 22575960
  39. Hoxa9 and Meis1 are key targets for MLL-ENL-mediated cellular immortalization.
    Mol Cell Biol. 2004 Jan;24(2):617-28 PMID: 14701735
  40. Blockade of miR-150 maturation by MLL-fusion/MYC/LIN-28 is required for MLL-associated leukemia.
    Cancer Cell. 2012 Oct 16;22(4):524-35 PMID: 23079661
  41. FTO: linking m6A demethylation to adipogenesis.
    Cell Res. 2015 Jan;25(1):3-4 PMID: 25475057
  42. Hypoxia induces the breast cancer stem cell phenotype by HIF-dependent and ALKBH5-mediated m⁶A-demethylation of NANOG mRNA.
    Proc Natl Acad Sci U S A. 2016 Apr 5;113(14 ):E2047-56 PMID: 27001847
  43. N6-methyladenosine marks primary microRNAs for processing.
    Nature. 2015 Mar 26;519(7544):482-5 PMID: 25799998
  44. Fat mass and obesity-associated (FTO) protein interacts with CaMKII and modulates the activity of CREB signaling pathway.
    Hum Mol Genet. 2014 Jun 15;23 (12 ):3299-306 PMID: 24488767
  45. Arsenic trioxide and all-trans retinoic acid target NPM1 mutant oncoprotein levels and induce apoptosis in NPM1-mutated AML cells.
    Blood. 2015 May 28;125(22):3455-65 PMID: 25795919
  46. Use of all-trans retinoic acid in the treatment of acute promyelocytic leukemia.
    Blood. 1988 Aug;72(2):567-72 PMID: 3165295
  47. Identification of methylated nucleosides in messenger RNA from Novikoff hepatoma cells.
    Proc Natl Acad Sci U S A. 1974 Oct;71(10):3971-5 PMID: 4372599
  48. Lineage restriction of the RARalpha gene expression in myeloid differentiation.
    Blood. 2001 Oct 15;98 (8):2563-7 PMID: 11588055
  49. TET1 plays an essential oncogenic role in MLL-rearranged leukemia.
    Proc Natl Acad Sci U S A. 2013 Jul 16;110(29):11994-9 PMID: 23818607
  50. Retinoic acid and arsenic trioxide trigger degradation of mutated NPM1, resulting in apoptosis of AML cells.
    Blood. 2015 May 28;125(22):3447-54 PMID: 25800051
  51. hDOT1L links histone methylation to leukemogenesis.
    Cell. 2005 Apr 22;121(2):167-78 PMID: 15851025
  52. Exome-based analysis for RNA epigenome sequencing data.
    Bioinformatics. 2013 Jun 15;29(12):1565-7 PMID: 23589649
  53. Perturbation of m6A writers reveals two distinct classes of mRNA methylation at internal and 5' sites.
    Cell Rep. 2014 Jul 10;8(1):284-96 PMID: 24981863
  54. ATRA-regulated Asb-2 gene induced in differentiation of HL-60 leukemia cells.
    FEBS Lett. 2001 Sep 14;505(2):223-8 PMID: 11566180
  55. Leukaemogenesis: more than mutant genes.
    Nat Rev Cancer. 2010 Jan;10(1):23-36 PMID: 20029422
  56. Overweight, obesity and risk of haematological malignancies: a cohort study of Swedish and Finnish twins.
    Eur J Cancer. 2009 May;45(7):1232-8 PMID: 19091543
  57. Reversible RNA adenosine methylation in biological regulation.
    Trends Genet. 2013 Feb;29(2):108-15 PMID: 23218460
  58. The dynamic epitranscriptome: N6-methyladenosine and gene expression control.
    Nat Rev Mol Cell Biol. 2014 May;15(5):313-26 PMID: 24713629
  59. Stem cells. m6A mRNA methylation facilitates resolution of naïve pluripotency toward differentiation.
    Science. 2015 Feb 27;347(6225):1002-6 PMID: 25569111
  60. Association between FTO gene polymorphism and cancer risk: evidence from 16,277 cases and 31,153 controls.
    Tumour Biol. 2012 Aug;33(4):1237-43 PMID: 22396042
  61. The obesity-associated SNPs in intron 1 of the FTO gene affect primary transcript levels.
    Eur J Hum Genet. 2010 Sep;18(9):1054-6 PMID: 20512162
  62. Long-term efficacy and safety of all-trans retinoic acid/arsenic trioxide-based therapy in newly diagnosed acute promyelocytic leukemia.
    Proc Natl Acad Sci U S A. 2009 Mar 3;106(9):3342-7 PMID: 19225113
  63. The fat mass and obesity associated gene FTO functions in the brain to regulate postnatal growth in mice.
    PLoS One. 2010 Nov 16;5(11):e14005 PMID: 21103374
  64. Overexpression of Fto leads to increased food intake and results in obesity.
    Nat Genet. 2010 Dec;42(12 ):1086-92 PMID: 21076408
  65. Sensitization by 5-aza-2'-deoxycytidine of leukaemia cells with MLL abnormalities to induction of differentiation by all-trans retinoic acid and 1alpha,25-dihydroxyvitamin D3.
    Br J Haematol. 2001 Feb;112(2):315-26 PMID: 11167824
  66. Transcriptome-wide mapping of N(6)-methyladenosine by m(6)A-seq based on immunocapturing and massively parallel sequencing.
    Nat Protoc. 2013 Jan;8(1):176-89 PMID: 23288318
  67. Gene expression regulation mediated through reversible m⁶A RNA methylation.
    Nat Rev Genet. 2014 May;15(5):293-306 PMID: 24662220
  68. Mammalian WTAP is a regulatory subunit of the RNA N6-methyladenosine methyltransferase.
    Cell Res. 2014 Feb;24(2):177-89 PMID: 24407421
  69. The histone demethylase PHF8 governs retinoic acid response in acute promyelocytic leukemia.
    Cancer Cell. 2013 Mar 18;23 (3):376-89 PMID: 23518351
  70. MLL-rearranged leukemia is dependent on aberrant H3K79 methylation by DOT1L.
    Cancer Cell. 2011 Jul 12;20(1):66-78 PMID: 21741597
  71. N6-methyl-adenosine (m6A) in RNA: an old modification with a novel epigenetic function.
    Genomics Proteomics Bioinformatics. 2013 Feb;11(1):8-17 PMID: 23453015
  72. Loss-of-function mutation in the dioxygenase-encoding FTO gene causes severe growth retardation and multiple malformations.
    Am J Hum Genet. 2009 Jul;85(1):106-11 PMID: 19559399
  73. Retinoic acid and arsenic trioxide for acute promyelocytic leukemia.
    N Engl J Med. 2013 Jul 11;369(2):111-21 PMID: 23841729
Article Info
Journal
Cancer cell
Abbr.
Cancer Cell
ISSN
1878-3686
Published
2017-00-09
Epub
2016-00-22
Pages
127-141
Language
English
Region
United States
NLM ID
101130617
PMCID
PMC5234852
Subset
IM
Grants
NCI NIH HHS · R01 CA122623 · United States
NCI NIH HHS · R01 CA182528 · United States
NCI NIH HHS · R01 CA214965 · United States
Howard Hughes Medical Institute · United States
NCI NIH HHS · R01 CA116097 · United States
NCI NIH HHS · T32 CA009594 · United States
NIGMS NIH HHS · R01 GM071440 · United States
NCI NIH HHS · R01 CA178454 · United States
NCI NIH HHS · R01 CA211614 · United States
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