-
Metagenomic biomarker discovery and explanation.
Genome Biol. 2011 Jun 24;12(6):R60
PMID: 21702898
-
Human genetics shape the gut microbiome.
Cell. 2014 Nov 6;159(4):789-99
PMID: 25417156
-
CD4+CD25+ regulatory T cells control induction of autoimmune hemolytic anemia.
Blood. 2005 May 1;105(9):3746-8
PMID: 15637139
-
Quantitative genetic background of the host influences gut microbiomes in chickens.
Sci Rep. 2013;3:1163
PMID: 23362462
-
Evaluation of the immune benefits of two probiotic strains Bifidobacterium animalis ssp. lactis, BB-12® and Lactobacillus paracasei ssp. paracasei, L. casei 431® in an influenza vaccination model: a randomised, double-blind, placebo-controlled study.
Br J Nutr. 2012 Mar;107(6):876-84
PMID: 21899798
-
Analysis of gut microbial regulation of host gene expression along the length of the gut and regulation of gut microbial ecology through MyD88.
Gut. 2012 Aug;61(8):1124-31
PMID: 22115825
-
Metabolites produced by commensal bacteria promote peripheral regulatory T-cell generation.
Nature. 2013 Dec 19;504(7480):451-5
PMID: 24226773
-
Body weight selection affects quantitative genetic correlated responses in gut microbiota.
PLoS One. 2014 Mar 07;9(3):e89862
PMID: 24608294
-
Cutting edge: direct suppression of B cells by CD4+ CD25+ regulatory T cells.
J Immunol. 2005 Oct 1;175(7):4180-3
PMID: 16177055
-
MICROBIOME. Rethinking heritability of the microbiome.
Science. 2015 Sep 11;349(6253):1172-3
PMID: 26359393
-
Intestinal microbiota, microbial translocation, and systemic inflammation in chronic HIV infection.
J Infect Dis. 2015 Jan 1;211(1):19-27
PMID: 25057045
-
IL-10-producing forkhead box protein 3-negative regulatory T cells inhibit B-cell responses and are involved in systemic lupus erythematosus.
J Allergy Clin Immunol. 2016 Jan;137(1):318-21
PMID: 26318071
-
Functional defect of regulatory CD4(+)CD25+ T cells in the thymus of patients with autoimmune myasthenia gravis.
Blood. 2005 Jan 15;105(2):735-41
PMID: 15454488
-
Dendritic cells enhance growth and differentiation of CD40-activated B lymphocytes.
J Exp Med. 1997 Mar 3;185(5):941-51
PMID: 9120400
-
Homeostasis and inflammation in the intestine.
Cell. 2010 Mar 19;140(6):859-70
PMID: 20303876
-
Phenotypic responses of chickens to long-term selection for high or low antibody titers to sheep red blood cells.
Poult Sci. 2012 May;91(5):1047-56
PMID: 22499860
-
TFH-IgA responses keep microbiota in check.
Cell Host Microbe. 2015 Feb 11;17(2):144-6
PMID: 25674979
-
Antibody transmitting ability of hens from lines of chickens differing in response to SRBC antigen.
Br Poult Sci. 1997 Dec;38(5):480-4
PMID: 9510990
-
Genome-wide standing variation facilitates long-term response to bidirectional selection for antibody response in chickens.
BMC Genomics. 2017 Jan 18;18(1):99
PMID: 28100171
-
Epigenetic control of the host gene by commensal bacteria in large intestinal epithelial cells.
J Biol Chem. 2011 Oct 14;286(41):35755-62
PMID: 21862578
-
Regulatory T cells can migrate to follicles upon T cell activation and suppress GC-Th cells and GC-Th cell-driven B cell responses.
J Clin Invest. 2004 Dec;114(11):1640-9
PMID: 15578096
-
Gut Bacteria Metabolism Impacts Immune Recovery in HIV-infected Individuals.
EBioMedicine. 2016 Jun;8:203-16
PMID: 27428431
-
Lactobacilli activate human dendritic cells that skew T cells toward T helper 1 polarization.
Proc Natl Acad Sci U S A. 2005 Feb 22;102(8):2880-5
PMID: 15710900
-
MyD88 signaling in T cells directs IgA-mediated control of the microbiota to promote health.
Cell Host Microbe. 2015 Feb 11;17(2):153-63
PMID: 25620548
-
The Toll-like receptor 2 pathway establishes colonization by a commensal of the human microbiota.
Science. 2011 May 20;332(6032):974-7
PMID: 21512004
-
Deacetylase inhibition promotes the generation and function of regulatory T cells.
Nat Med. 2007 Nov;13(11):1299-307
PMID: 17922010
-
Evolution of mammals and their gut microbes.
Science. 2008 Jun 20;320(5883):1647-51
PMID: 18497261
-
Genomic regions associated with antibody response to sheep red blood cells in the chicken.
Anim Genet. 2011 Jun;42(3):300-8
PMID: 21198697
-
Induction of colonic regulatory T cells by indigenous Clostridium species.
Science. 2011 Jan 21;331(6015):337-41
PMID: 21205640
-
Production and persistence of antibodies in chickens to sheep erythrocytes. 2. Resistance to infectious diseases.
Poult Sci. 1980 Feb;59(2):205-10
PMID: 6997852
-
The microbial metabolites, short-chain fatty acids, regulate colonic Treg cell homeostasis.
Science. 2013 Aug 2;341(6145):569-73
PMID: 23828891
-
Origin, maturation and antigen presenting function of dendritic cells.
Curr Opin Immunol. 1997 Feb;9(1):10-6
PMID: 9039784
-
QIIME allows analysis of high-throughput community sequencing data.
Nat Methods. 2010 May;7(5):335-6
PMID: 20383131
-
Immunomodulatory effects of deacetylase inhibitors: therapeutic targeting of FOXP3+ regulatory T cells.
Nat Rev Drug Discov. 2009 Dec;8(12):969-81
PMID: 19855427
-
Interleukin 23 production by intestinal CD103(+)CD11b(+) dendritic cells in response to bacterial flagellin enhances mucosal innate immune defense.
Immunity. 2012 Feb 24;36(2):276-87
PMID: 22306017
-
Identifying biologically relevant differences between metagenomic communities.
Bioinformatics. 2010 Mar 15;26(6):715-21
PMID: 20130030
-
Induction of Th17 cells by segmented filamentous bacteria in the murine intestine.
J Immunol Methods. 2015 Jun;421:104-11
PMID: 25858227
-
A compositional look at the human gastrointestinal microbiome and immune activation parameters in HIV infected subjects.
PLoS Pathog. 2014 Feb 20;10(2):e1003829
PMID: 24586144
-
CD4(+) regulatory T cells in autoimmunity and allergy.
Curr Opin Immunol. 2002 Dec;14(6):771-8
PMID: 12413528
-
Epithelial crosstalk at the microbiota-mucosal interface.
Proc Natl Acad Sci U S A. 2011 Mar 15;108 Suppl 1:4607-14
PMID: 20826446
-
UniFrac: a new phylogenetic method for comparing microbial communities.
Appl Environ Microbiol. 2005 Dec;71(12):8228-35
PMID: 16332807
-
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences.
Nat Biotechnol. 2013 Sep;31(9):814-21
PMID: 23975157
-
Regulatory T cells and immune tolerance.
Cell. 2008 May 30;133(5):775-87
PMID: 18510923
-
Innate and adaptive immunity cooperate flexibly to maintain host-microbiota mutualism.
Science. 2009 Jul 31;325(5940):617-20
PMID: 19644121
-
The G-protein coupled bile salt receptor TGR5 is expressed in liver sinusoidal endothelial cells.
Hepatology. 2007 Mar;45(3):695-704
PMID: 17326144
-
The microbial metabolite butyrate regulates intestinal macrophage function via histone deacetylase inhibition.
Proc Natl Acad Sci U S A. 2014 Feb 11;111(6):2247-52
PMID: 24390544
-
The history of Toll-like receptors - redefining innate immunity.
Nat Rev Immunol. 2013 Jun;13(6):453-60
PMID: 23681101
-
The lipopolysaccharide core of Brucella abortus acts as a shield against innate immunity recognition.
PLoS Pathog. 2012;8(5):e1002675
PMID: 22589715
-
Structural Modifications of Bacterial Lipopolysaccharide that Facilitate Gram-Negative Bacteria Evasion of Host Innate Immunity.
Front Immunol. 2013 May 24;4:109
PMID: 23745121
-
Dendritic cells and the control of immunity.
Nature. 1998 Mar 19;392(6673):245-52
PMID: 9521319
-
The bile acid receptor FXR is a modulator of intestinal innate immunity.
J Immunol. 2009 Nov 15;183(10):6251-61
PMID: 19864602
-
Aberrant expansion of segmented filamentous bacteria in IgA-deficient gut.
Proc Natl Acad Sci U S A. 2004 Feb 17;101(7):1981-6
PMID: 14766966
-
Correlated responses of chickens to selection for production of antibodies to sheep erythrocytes.
Anim Blood Groups Biochem Genet. 1982;13(4):291-7
PMID: 7171132
-
Recognition of peptidoglycan from the microbiota by Nod1 enhances systemic innate immunity.
Nat Med. 2010 Feb;16(2):228-31
PMID: 20081863
-
The key role of segmented filamentous bacteria in the coordinated maturation of gut helper T cell responses.
Immunity. 2009 Oct 16;31(4):677-89
PMID: 19833089
-
Intestinal commensal microbes as immune modulators.
Cell Host Microbe. 2012 Oct 18;12(4):496-508
PMID: 23084918