Home LiteratureArticle Details
PMID: 2832701 Published · ppublish English Comparative Study Journal Article Research Support, Non-U.S. Gov't

The complete nucleotide sequence of the colicinogenic plasmid ColA. High extent of homology with ColE1.

Molecular & general genetics : MGG ·Vol. 211 ·No. 2 ·1988-02-00 ·Pages 231-43

Morlon J, Chartier M, Bidaud M, Lazdunski C

Abstract

The complete nucleotide sequence of the colicinogenic plasmid ColA has been determined. The plasmid DNA consists of 6720 bp (molecular weight 4.48 X 10(6]. Fifteen putative biological functions have been identified using the functional map previously determined. These include 11 genes and 3 DNA sites. Nine genes encode proteins of which 3 have been fully characterized. The replication region of ColA coding for RNAI and RNAII is highly homologous to that of ColE1 and Clo DF13. The same holds true for the site-specific recombination region containing palindromic symmetry and involved in stable maintenance of the plasmids. A high percentage of homology has been detected for putative mobility proteins encoded by ColA and ColE1. The exclusion proteins are also highly homologous.

MeSH Terms
Amino Acid Sequence Base Sequence Colicins/genetics DNA Restriction Enzymes Escherichia coli/genetics Molecular Sequence Data Nucleic Acid Conformation Plasmids Sequence Homology, Nucleic Acid
Chemicals
Colicins DNA Restriction Enzymes
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Morlon J
Centre de Biochimie et de Biologie Moléculaire du CNRS, Marseille, France.
Chartier M
Bidaud M
Lazdunski C
References (54)
54 references, click to expand
  1. The promoters of the genes for colicin production, release and immunity in the ColA plasmid: effects of convergent transcription and Lex A protein.
    Nucleic Acids Res. 1986 Mar 25;14(6):2621-36 PMID: 2421251
  2. Colicin E3 and its immunity genes.
    J Mol Biol. 1985 Mar 20;182(2):217-27 PMID: 3889348
  3. Lipoprotein nature of the colicin A lysis protein: effect of amino acid substitutions at the site of modification and processing.
    J Bacteriol. 1987 May;169(5):2187-94 PMID: 3571165
  4. Further procedures for sequence analysis by computer.
    Nucleic Acids Res. 1978 Mar;5(3):1013-6 PMID: 643613
  5. Two major groups of colicin factors: their evolutionary significance.
    Mol Gen Genet. 1973 Sep 12;125(3):217-30 PMID: 4590272
  6. Control of initiation of pMB1 replication: purified Rop protein and RNA I affect primer formation in vitro.
    Cell. 1984 Jul;37(3):1009-14 PMID: 6204765
  7. Interaction between RNA1 and the primer precursor in the regulation of Co1E1 replication.
    J Mol Biol. 1983 Nov 5;170(3):635-50 PMID: 6195344
  8. Construction of a novel plasmid-phage hybrid: use of the hybrid to demonstrate ColE1 DNA replication in vivo in the absence of a ColE1-specified protein.
    Proc Natl Acad Sci U S A. 1978 May;75(5):2200-4 PMID: 276860
  9. Evolution of biosynthetic pathways: a common ancestor for threonine synthase, threonine dehydratase and D-serine dehydratase.
    EMBO J. 1986 Nov;5(11):3013-9 PMID: 3098560
  10. Nature of Col E 1 plasmid replication in Escherichia coli in the presence of the chloramphenicol.
    J Bacteriol. 1972 May;110(2):667-76 PMID: 4336693
  11. Physical map of pColA-CA31, an amplifiable plasmid, and location of colicin A structural gene.
    Gene. 1982 Mar;17(3):317-21 PMID: 7049840
  12. Nucleotide sequence of the gene for the immunity protein to colicin A. Analysis of codon usage of immunity proteins as compared to colicins.
    Eur J Biochem. 1984 Oct 1;144(1):73-8 PMID: 6383827
  13. A molecular genetic approach to the functioning of the immunity protein to colicin A.
    Mol Gen Genet. 1986 Mar;202(3):455-60 PMID: 3012271
  14. Control of ColE1 plasmid replication: binding of RNA I to RNA II and inhibition of primer formation.
    Cell. 1986 Oct 10;47(1):89-97 PMID: 2428506
  15. Nucleotide sequence and gene organization of ColE1 DNA.
    J Biol Chem. 1985 Jul 25;260(15):8925-35 PMID: 2991225
  16. Mitomycin C-induced bidirectional transcription from the colicin E1 promoter region in plasmid ColE1.
    Biochim Biophys Acta. 1986 Oct 16;868(1):39-44 PMID: 3092859
  17. Multimer resolution systems of ColE1 and ColK: localisation of the crossover site.
    Mol Gen Genet. 1985;201(2):334-8 PMID: 3003536
  18. Gating processes of channels induced by colicin A, its C-terminal fragment and colicin E1 in planar lipid bilayers.
    Eur Biophys J. 1987;14(3):147-53 PMID: 3830093
  19. ColE1 plasmid mobility and relaxation complex.
    Nature. 1978 Jul 20;274(5668):259-61 PMID: 210387
  20. Control of ColE1 plasmid replication: enhancement of binding of RNA I to the primer transcript by the Rom protein.
    Cell. 1984 Oct;38(3):871-8 PMID: 6207935
  21. ColE1 plasmid mobility: essential and conditional functions.
    Mol Gen Genet. 1979 Feb 16;170(1):103-7 PMID: 375012
  22. Processing of plasmid DNA during bacterial conjugation.
    Microbiol Rev. 1984 Mar;48(1):24-41 PMID: 6201705
  23. Inhibition of ColE1 RNA primer formation by a plasmid-specified small RNA.
    Proc Natl Acad Sci U S A. 1981 Mar;78(3):1421-5 PMID: 6165011
  24. pH-dependent membrane fusion is promoted by various colicins.
    EMBO J. 1985 Oct;4(10):2469-74 PMID: 3902468
  25. Localization of genes responsible for replication and immunity to colicin A on plasmid ColA-CA31.
    Mol Gen Genet. 1983;192(3):500-5 PMID: 6318041
  26. Multimerization of high copy number plasmids causes instability: CoIE1 encodes a determinant essential for plasmid monomerization and stability.
    Cell. 1984 Apr;36(4):1097-103 PMID: 6323019
  27. DNA-directed peptide synthesis. II. The synthesis of the alpha-fragment of the enzyme beta-galactosidase.
    Proc Natl Acad Sci U S A. 1967 Apr;57(4):1010-2 PMID: 5342418
  28. Site-directed mutagenesis of the COOH-terminal region of colicin A: effect on secretion and voltage-dependent channel activity.
    Proc Natl Acad Sci U S A. 1987 Mar;84(5):1152-6 PMID: 2434951
  29. DNA sequencing with chain-terminating inhibitors.
    Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463-7 PMID: 271968
  30. Characterization of the ColE1 primer-RNA1 complex: analysis of a domain of ColE1 RNA1 necessary for its interaction with primer RNA.
    Proc Natl Acad Sci U S A. 1985 Apr;82(8):2257-61 PMID: 2581244
  31. Structure and expression of the ColE2-P9 immunity gene.
    Nucleic Acids Res. 1985 Mar 11;13(5):1623-35 PMID: 2987833
  32. Control of ColE1 DNA replication: the rop gene product negatively affects transcription from the replication primer promoter.
    Proc Natl Acad Sci U S A. 1982 Oct;79(20):6313-7 PMID: 6183660
  33. Analysis of ColE1 expression in vitro after chromosome fragmentation.
    J Bacteriol. 1983 May;154(2):650-5 PMID: 6188745
  34. Complete nucleotide sequence of the structural gene for colicin A, a gene translated at non-uniform rate.
    J Mol Biol. 1983 Oct 25;170(2):271-85 PMID: 6313941
  35. The 3'-terminal sequence of Escherichia coli 16S ribosomal RNA: complementarity to nonsense triplets and ribosome binding sites.
    Proc Natl Acad Sci U S A. 1974 Apr;71(4):1342-6 PMID: 4598299
  36. Lack of effect of leader peptidase overproduction on the processing in vivo of exported proteins in Escherichia coli.
    J Gen Microbiol. 1986 Mar;132(3):689-96 PMID: 3525741
  37. Plasmid ColE1 incompatibility determined by interaction of RNA I with primer transcript.
    Proc Natl Acad Sci U S A. 1981 Oct;78(10):6096-100 PMID: 6171811
  38. Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information.
    Nucleic Acids Res. 1981 Jan 10;9(1):133-48 PMID: 6163133
  39. Structure and regulation of gene expression of a Clo DF13 plasmid DNA region involved in plasmid segregation and incompatibility.
    Nucleic Acids Res. 1983 Dec 20;11(24):8791-808 PMID: 6324101
  40. The complete nucleotide sequence of the bacteriocinogenic plasmid CloDF13.
    Plasmid. 1986 Sep;16(2):135-60 PMID: 3749334
  41. Determination of restriction sites and the nucleotide sequence surrounding the relaxation site of ColE1.
    J Mol Biol. 1978 Oct 5;124(4):601-39 PMID: 712849
  42. Isolation, molecular and functional properties of the C-terminal domain of colicin A.
    EMBO J. 1983;2(9):1501-7 PMID: 11892802
  43. Variable rate of polypeptide chain elongation for colicins A, E2 and E3.
    J Mol Biol. 1982 Jul 25;159(1):57-70 PMID: 6813508
  44. Sequence of the ebgR gene of Escherichia coli: evidence that the EBG and LAC operons are descended from a common ancestor.
    Mol Biol Evol. 1985 Nov;2(6):478-83 PMID: 3939708
  45. Complementation of transfer deficient ColE1 mutants.
    Mol Gen Genet. 1977 Mar 7;151(2):197-201 PMID: 327266
  46. Origin and direction of replication of the bacteriocinogenic plasmid Clo DF13.
    Nucleic Acids Res. 1979 Jan;6(1):71-80 PMID: 370788
  47. The origin of replication of plasmid p15A and comparative studies on the nucleotide sequences around the origin of related plasmids.
    Cell. 1983 Jan;32(1):119-29 PMID: 6186390
  48. A colicin A fragment containing the receptor binding domain can be directed to the periplasmic space in E. coli through gene fusion.
    FEBS Lett. 1984 Jul 9;172(2):183-8 PMID: 6378656
  49. Replication and structure of the bacteriocinogenic plasmids Clo DF13 and CoI E1.
    Plasmid. 1981 Jan;5(1):76-99 PMID: 6164067
  50. Sequencing end-labeled DNA with base-specific chemical cleavages.
    Methods Enzymol. 1980;65(1):499-560 PMID: 6246368
  51. Translation is a non-uniform process. Effect of tRNA availability on the rate of elongation of nascent polypeptide chains.
    J Mol Biol. 1984 Dec 15;180(3):549-76 PMID: 6084718
  52. Lysis protein encoded by plasmid ColA-CA31. Gene sequence and export.
    Mol Gen Genet. 1985;199(1):95-100 PMID: 3889552
  53. Identification of functional regions of the colicinogenic plasmid ColA.
    Mol Gen Genet. 1988 Feb;211(2):223-30 PMID: 2832700
  54. Identification of ColE1 DNA sequences that direct single strand-to-double strand conversion by a phi X174 type mechanism.
    Proc Natl Acad Sci U S A. 1982 May;79(10):3153-7 PMID: 6212928
Article Info
Journal
Molecular & general genetics : MGG
Abbr.
Mol Gen Genet
ISSN
0026-8925
Published
1988-02-00
Pages
231-43
Language
English
Region
Germany
NLM ID
0125036
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com