Home LiteratureArticle Details
PMID: 2770691 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

The linear mitochondrial plasmid pClK1 of the phytopathogenic fungus Claviceps purpurea may code for a DNA polymerase and an RNA polymerase.

Molecular & general genetics : MGG ·Vol. 217 ·No. 1 ·1989-05-00 ·Pages 132-40

Oeser B, Tudzynski P

Abstract

Plasmid pClK1, a linear mitochondrial plasmid of Claviceps purpurea, was completely sequenced. The sequence contains two long open reading frames (ORF1, 3291 bp; ORF2, 2910 bp), and at least four smaller ORFs. The potential polypeptide derived from ORF1 shows homology to the family B type DNA polymerases. The product of ORF2 has significant homology to the mitochondrial RNA polymerase of yeast and RNA polymerases from bacteriophages. ORF1 and ORF2 show homology to URF3 and URF1 of the maize plasmids S1 and S2, respectively. No homology to any published protein sequence was found for the smaller ORFs. The origin of the terminal protein attached to the 5' ends of pClK1 remains open; several alternatives for its origin are discussed. The sequence data as a whole confirm the virus-like character of pClK1 already postulated from structural properties. Thus pClK1 together with S plasmids of maize and several other linear plasmids make up a distinct class of DNA species of plants and fungi probably derived from a common virus-like ancestor.

MeSH Terms
Amino Acid Sequence Base Sequence Blotting, Southern Claviceps/enzymology,genetics Cloning, Molecular DNA, Fungal/genetics DNA, Mitochondrial/genetics DNA-Directed DNA Polymerase/genetics DNA-Directed RNA Polymerases/genetics Electrophoresis, Polyacrylamide Gel Models, Genetic Molecular Sequence Data Plasmids Sequence Homology, Nucleic Acid
Chemicals
DNA, Fungal DNA, Mitochondrial DNA-Directed RNA Polymerases DNA-Directed DNA Polymerase
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Oeser B
Allgemeine Botanik/Mikrobiologie, Botanisches Institut, Westfälische Wilhelms-Universität, Münster, Federal Republic of Germany.
Tudzynski P
References (52)
52 references, click to expand
  1. Nucleotide sequence of Bacillus phage Nf terminal protein gene.
    Nucleic Acids Res. 1987 Jul 10;15(13):5251-9 PMID: 3601672
  2. Modeling functional sites in DNA polymerases.
    Trends Genet. 1988 Feb;4(2):42-6 PMID: 3072719
  3. Nucleotide sequence and expression of the cloned gene of bacteriophage SP6 RNA polymerase.
    Nucleic Acids Res. 1987 Mar 25;15(6):2653-64 PMID: 3031606
  4. Primary structure of T4 DNA polymerase. Evolutionary relatedness to eucaryotic and other procaryotic DNA polymerases.
    J Biol Chem. 1988 Jun 5;263(16):7478-86 PMID: 3286635
  5. HYSTRUC: hydropathy and secondary structure prediction.
    Comput Appl Biosci. 1988 Apr;4(2):309 PMID: 3167608
  6. Supercoil sequencing: a fast and simple method for sequencing plasmid DNA.
    DNA. 1985 Apr;4(2):165-70 PMID: 3996185
  7. Structural and functional relationships between prokaryotic and eukaryotic DNA polymerases.
    EMBO J. 1987 Dec 20;6(13):4219-25 PMID: 3127204
  8. Efficient isolation of the linear DNA killer plasmid of Kluyveromyces lactis: evidence for location and expression in the cytoplasm and characterization of their terminally bound proteins.
    Nucleic Acids Res. 1986 Sep 11;14(17):6871-84 PMID: 3763395
  9. DNA sequence of the region in the genome of herpes simplex virus type 1 containing the genes for DNA polymerase and the major DNA binding protein.
    Nucleic Acids Res. 1985 Nov 25;13(22):8143-63 PMID: 2999714
  10. Codon usage tabulated from the GenBank Genetic Sequence Data.
    Nucleic Acids Res. 1988;16 Suppl:r315-402 PMID: 3368329
  11. S2 plasmid from cms-S-maize mitochondria potentially encodes a specific RNA polymerase.
    Nucleic Acids Res. 1988 May 11;16(9):4177 PMID: 3287342
  12. Extranuclear gene expression in yeast: evidence for a plasmid-encoded RNA polymerase of unique structure.
    Nucleic Acids Res. 1988 Aug 25;16(16):8097-112 PMID: 3138657
  13. Extrachromosomal genetics of Claviceps purpurea : I. Mitochondrial DNA and mitochondrial plasmids.
    Curr Genet. 1983 Apr;7(2):145-50 PMID: 24173157
  14. Conservation of RNA secondary structures in two intron families including mitochondrial-, chloroplast- and nuclear-encoded members.
    EMBO J. 1983;2(1):33-8 PMID: 11894905
  15. Nucleotide sequence of the S-2 mitochondrial DNA from the S cytoplasm of maize.
    Proc Natl Acad Sci U S A. 1983 Jul;80(13):4055-9 PMID: 16593334
  16. DNA sequence analysis of the region encoding the terminal protein and the hypothetical N-gene product of adenovirus type 2.
    J Biol Chem. 1982 Nov 25;257(22):13492-8 PMID: 7142162
  17. Genome organization of the killer plasmid pGK12 from Kluyveromyces lactis.
    Nucleic Acids Res. 1988 Jul 11;16(13):5863-78 PMID: 3041369
  18. A comprehensive sequence analysis program for the IBM personal computer.
    Nucleic Acids Res. 1984 Jan 11;12(1 Pt 2):581-99 PMID: 6546431
  19. A rapid method for detecting and mapping homology between heterologous DNAs. Evaluation of polyomavirus genomes.
    J Biol Chem. 1979 Jun 10;254(11):4876-83 PMID: 220264
  20. Formation of a covalent complex between the terminal protein of pneumococcal bacteriophage Cp-1 and 5'-dAMP.
    J Virol. 1986 Apr;58(1):31-5 PMID: 3081736
  21. The Aspergillus nidulans mitochondrial genome.
    Curr Genet. 1985;9(2):113-7 PMID: 3916717
  22. Eukaryotic DNA replication.
    Annu Rev Biochem. 1986;55:733-71 PMID: 3017196
  23. Structural and functional analysis of mitochondrial plasmids in Claviceps purpurea.
    Mol Gen Genet. 1988 Sep;214(1):128-34 PMID: 3226422
  24. Nucleotide sequence of the S-1 mitochondrial DNA from the S cytoplasm of maize.
    EMBO J. 1985 May;4(5):1125-8 PMID: 16453611
  25. Two linear plasmids in mitochondria of Fusarium solani f. sp. cucurbitae.
    Plasmid. 1988 Jan;19(1):57-67 PMID: 3399553
  26. S1 plasmid from cms-S-maize mitochondria encodes a viral type DNA-polymerase.
    Nucleic Acids Res. 1987 Aug 25;15(16):6758 PMID: 3628017
  27. Insertion of a foreign nucleotide sequence into mitochondrial DNA causes senescence in Neurospora intermedia.
    Cell. 1985 Jul;41(3):877-84 PMID: 2408762
  28. A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity.
    Anal Biochem. 1983 Jul 1;132(1):6-13 PMID: 6312838
  29. The pUC plasmids, an M13mp7-derived system for insertion mutagenesis and sequencing with synthetic universal primers.
    Gene. 1982 Oct;19(3):259-68 PMID: 6295879
  30. Detection of specific sequences among DNA fragments separated by gel electrophoresis.
    J Mol Biol. 1975 Nov 5;98(3):503-17 PMID: 1195397
  31. Location of the serine residue involved in the linkage between the terminal protein and the DNA of phage phi 29.
    Nucleic Acids Res. 1985 Nov 11;13(21):7715-28 PMID: 3934646
  32. Unidirectional digestion with exonuclease III creates targeted breakpoints for DNA sequencing.
    Gene. 1984 Jun;28(3):351-9 PMID: 6235151
  33. Mitochondrial RNA polymerase of Saccharomyces cerevisiae: composition and mechanism of promoter recognition.
    EMBO J. 1988 Oct;7(10):3255-62 PMID: 3053163
  34. A rapid alkaline extraction procedure for screening recombinant plasmid DNA.
    Nucleic Acids Res. 1979 Nov 24;7(6):1513-23 PMID: 388356
  35. S2 plasmid from Zea mays encodes a specific RNA polymerase: an alternative alignment.
    Nucleic Acids Res. 1988 Sep 12;16(17):8729 PMID: 3419936
  36. Yeast killer plasmid pGKL1 encodes a DNA polymerase belonging to the family B DNA polymerases.
    Nucleic Acids Res. 1987 Nov 11;15(21):9088 PMID: 3684586
  37. Human DNA polymerase alpha gene expression is cell proliferation dependent and its primary structure is similar to both prokaryotic and eukaryotic replicative DNA polymerases.
    EMBO J. 1988 Jan;7(1):37-47 PMID: 3359994
  38. Bacteriophage PRD1 DNA polymerase: evolution of DNA polymerases.
    Proc Natl Acad Sci U S A. 1987 Dec;84(23):8287-91 PMID: 3479792
  39. Amino acid changes coded by bacteriophage T4 DNA polymerase mutator mutants. Relating structure to function.
    J Mol Biol. 1988 Aug 20;202(4):711-24 PMID: 3172235
  40. Colony hybridization: a method for the isolation of cloned DNAs that contain a specific gene.
    Proc Natl Acad Sci U S A. 1975 Oct;72(10):3961-5 PMID: 1105573
  41. Three variant introns of the same general class in the mitochondrial gene for cytochrome oxidase subunit 1 in Aspergillus nidulans.
    EMBO J. 1984 Sep;3(9):2121-8 PMID: 6092056
  42. Nucleotide sequence of the major early region of bacteriophage phi 29.
    Gene. 1982 Mar;17(3):323-35 PMID: 6809534
  43. Sequence and analysis of the gene for bacteriophage T3 RNA polymerase.
    Nucleic Acids Res. 1985 Sep 25;13(18):6753-66 PMID: 3903658
  44. Homology between DNA polymerases of poxviruses, herpesviruses, and adenoviruses: nucleotide sequence of the vaccinia virus DNA polymerase gene.
    Proc Natl Acad Sci U S A. 1986 Jun;83(11):3659-63 PMID: 3012524
  45. Yeast mitochondrial RNA polymerase is homologous to those encoded by bacteriophages T3 and T7.
    Cell. 1987 Oct 9;51(1):89-99 PMID: 3308116
  46. Natural variation in the genetic code.
    Annu Rev Genet. 1987;21:67-91 PMID: 3327473
  47. Construction of improved M13 vectors using oligodeoxynucleotide-directed mutagenesis.
    Gene. 1983 Dec;26(1):101-6 PMID: 6323249
  48. The complete nucleotide sequence of the left very early region of Escherichia coli bacteriophage PRD1 coding for the terminal protein and the DNA polymerase.
    Gene. 1987;57(1):121-30 PMID: 3322943
  49. Genetics of the ergot fungus Claviceps purpurea : I. Proof of a monoecious life cycle and segregation patterns for mycelial morphology and alkaloid production.
    Theor Appl Genet. 1978 Jul;53(4):145-9 PMID: 24309592
  50. Linear plasmidlike DNA in the plant pathogenic fungus Fusarium oxysporum f. sp. conglutinans.
    J Bacteriol. 1986 Aug;167(2):587-93 PMID: 3015880
  51. Nucleotide sequence and transcription analysis of a linear DNA plasmid associated with the killer character of the yeast Kluyveromyces lactis.
    Nucleic Acids Res. 1984 Aug 10;12(15):6011-30 PMID: 6473099
  52. The characterization of yeast mitochondrial RNA polymerase. A monomer of 150,000 daltons with a transcription factor of 70,000 daltons.
    J Biol Chem. 1988 Jul 25;263(21):10096-103 PMID: 3292522
Article Info
Journal
Molecular & general genetics : MGG
Abbr.
Mol Gen Genet
ISSN
0026-8925
Published
1989-05-00
Pages
132-40
Language
English
Region
Germany
NLM ID
0125036
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com