Home LiteratureArticle Details
PMID: 25315350 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Review

Commensal microbiota regulates T cell fate decision in the gut.

Seminars in immunopathology ·Vol. 37 ·No. 1 ·2015-01-00 ·Pages 17-25

Furusawa Y, Obata Y, Hase K

Abstract

Commensal microbiota shapes the intestinal immune system by regulating T helper (TH) cell lineage differentiation. For example, Bacteroides fragilis colonization not only optimizes the systemic TH1/TH2 balance, but also can induce regulatory T (Treg) cell differentiation in the gut. In addition, segmented filamentous bacteria (SFB) facilitate the development of TH17 cells in the small intestine. The 17 strains within clusters IV, XIVa, and XVIII of Clostridiales found in human feces can also induce the differentiation and expansion of Treg cells in the colon. Thus, the regulation of TH cell differentiation by commensal bacteria is evident; however, the molecular mechanisms underlying these processes remain uncertain. Recent studies have demonstrated that bacterial components, as well as their metabolites, play a central role in regulating TH cell development. Furthermore, these metabolites can elicit changes in histone posttranslational modification to modify the expression of critical regulators of T cell fate. In this review, we discuss the mechanisms and biological significance of microbiota-dependent TH differentiation.

MeSH Terms
Cell Differentiation/immunology Cell Lineage Humans Intestines/immunology,microbiology Microbiota/immunology Symbiosis/immunology T-Lymphocyte Subsets/cytology,immunology T-Lymphocytes, Helper-Inducer/cytology,immunology
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Furusawa Yukihiro
Department of Biochemistry, Graduate School of Pharmaceutical Science, Keio University, Tokyo, 105-8512, Japan.
Obata Yuuki
Hase Koji
References (72)
72 references, click to expand
  1. Translating the histone code.
    Science. 2001 Aug 10;293(5532):1074-80 PMID: 11498575
  2. Deacetylase inhibition promotes the generation and function of regulatory T cells.
    Nat Med. 2007 Nov;13(11):1299-307 PMID: 17922010
  3. Cutting edge: TCR stimulation is sufficient for induction of Foxp3 expression in the absence of DNA methyltransferase 1.
    J Immunol. 2009 Jun 1;182(11):6648-52 PMID: 19454658
  4. Role of the PD-1 pathway in the immune response.
    Am J Transplant. 2012 Oct;12(10):2575-87 PMID: 22900886
  5. Inhibition of histone deacetylase activity by butyrate.
    J Nutr. 2003 Jul;133(7 Suppl):2485S-2493S PMID: 12840228
  6. Inducible Foxp3+ regulatory T-cell development by a commensal bacterium of the intestinal microbiota.
    Proc Natl Acad Sci U S A. 2010 Jul 6;107(27):12204-9 PMID: 20566854
  7. Chromatin immunoprecipitation on microarray analysis of Smad2/3 binding sites reveals roles of ETS1 and TFAP2A in transforming growth factor beta signaling.
    Mol Cell Biol. 2009 Jan;29(1):172-86 PMID: 18955504
  8. Characterization of the 17 strains of regulatory T cell-inducing human-derived Clostridia.
    Gut Microbes. 2014 May-Jun;5(3):333-9 PMID: 24642476
  9. A function for interleukin 2 in Foxp3-expressing regulatory T cells.
    Nat Immunol. 2005 Nov;6(11):1142-51 PMID: 16227984
  10. Opposing regulation of the locus encoding IL-17 through direct, reciprocal actions of STAT3 and STAT5.
    Nat Immunol. 2011 Mar;12(3):247-54 PMID: 21278738
  11. Cutting edge: TLR2 directly triggers Th1 effector functions.
    J Immunol. 2007 Jun 1;178(11):6715-9 PMID: 17513716
  12. Neuropilin-1 distinguishes natural and inducible regulatory T cells among regulatory T cell subsets in vivo.
    J Exp Med. 2012 Sep 24;209(10):1713-22, S1-19 PMID: 22966003
  13. T cell immunity as a tool for studying epigenetic regulation of cellular differentiation.
    Front Genet. 2013 Nov 12;4:218 PMID: 24273551
  14. Intestinal microbial diversity during early-life colonization shapes long-term IgE levels.
    Cell Host Microbe. 2013 Nov 13;14(5):559-70 PMID: 24237701
  15. Linking DNA methylation and histone modification: patterns and paradigms.
    Nat Rev Genet. 2009 May;10(5):295-304 PMID: 19308066
  16. A positive role for histone acetylation in transcription factor access to nucleosomal DNA.
    Cell. 1993 Jan 15;72(1):73-84 PMID: 8422685
  17. Histone deacetylases 6 and 9 and sirtuin-1 control Foxp3+ regulatory T cell function through shared and isoform-specific mechanisms.
    Sci Signal. 2012 Jun 19;5(229):ra45 PMID: 22715468
  18. The SRA protein Np95 mediates epigenetic inheritance by recruiting Dnmt1 to methylated DNA.
    Nature. 2007 Dec 6;450(7171):908-12 PMID: 17994007
  19. The emerging role of CTLA4 as a cell-extrinsic regulator of T cell responses.
    Nat Rev Immunol. 2011 Nov 25;11(12):852-63 PMID: 22116087
  20. The microbial metabolite butyrate regulates intestinal macrophage function via histone deacetylase inhibition.
    Proc Natl Acad Sci U S A. 2014 Feb 11;111(6):2247-52 PMID: 24390544
  21. Intestinal bacterial colonization induces mutualistic regulatory T cell responses.
    Immunity. 2011 May 27;34(5):794-806 PMID: 21596591
  22. Low counts of Faecalibacterium prausnitzii in colitis microbiota.
    Inflamm Bowel Dis. 2009 Aug;15(8):1183-9 PMID: 19235886
  23. CREB/ATF-dependent T cell receptor-induced FoxP3 gene expression: a role for DNA methylation.
    J Exp Med. 2007 Jul 9;204(7):1543-51 PMID: 17591856
  24. Interleukin-10 signaling in regulatory T cells is required for suppression of Th17 cell-mediated inflammation.
    Immunity. 2011 Apr 22;34(4):566-78 PMID: 21511185
  25. Regulation of T cells by gut commensal microbiota.
    Curr Opin Rheumatol. 2011 Jul;23(4):372-6 PMID: 21577116
  26. GPR15-mediated homing controls immune homeostasis in the large intestine mucosa.
    Science. 2013 Jun 21;340(6139):1456-9 PMID: 23661644
  27. The epigenetic regulator Uhrf1 facilitates the proliferation and maturation of colonic regulatory T cells.
    Nat Immunol. 2014 Jun;15(6):571-9 PMID: 24777532
  28. Gut microbiota metabolism of dietary fiber influences allergic airway disease and hematopoiesis.
    Nat Med. 2014 Feb;20(2):159-66 PMID: 24390308
  29. The gut microbiota--masters of host development and physiology.
    Nat Rev Microbiol. 2013 Apr;11(4):227-38 PMID: 23435359
  30. The microbial metabolites, short-chain fatty acids, regulate colonic Treg cell homeostasis.
    Science. 2013 Aug 2;341(6145):569-73 PMID: 23828891
  31. Epigenetic control of FOXP3 expression: the key to a stable regulatory T-cell lineage?
    Nat Rev Immunol. 2009 Feb;9(2):83-9 PMID: 19114986
  32. Epigenetic regulation of Foxp3 expression in regulatory T cells by DNA methylation.
    J Immunol. 2009 Jan 1;182(1):259-73 PMID: 19109157
  33. Host-gut microbiota metabolic interactions.
    Science. 2012 Jun 8;336(6086):1262-7 PMID: 22674330
  34. HDAC family: What are the cancer relevant targets?
    Cancer Lett. 2009 May 8;277(1):8-21 PMID: 18824292
  35. Sodium butyrate inhibits histone deacetylation in cultured cells.
    Cell. 1978 May;14(1):105-13 PMID: 667927
  36. Epigenetic modifications and human disease.
    Nat Biotechnol. 2010 Oct;28(10):1057-68 PMID: 20944598
  37. Metabolites produced by commensal bacteria promote peripheral regulatory T-cell generation.
    Nature. 2013 Dec 19;504(7480):451-5 PMID: 24226773
  38. Role of conserved non-coding DNA elements in the Foxp3 gene in regulatory T-cell fate.
    Nature. 2010 Feb 11;463(7282):808-12 PMID: 20072126
  39. Dysbiosis in inflammatory bowel disease.
    Gut. 2004 Jan;53(1):1-4 PMID: 14684564
  40. Microbiota in autoimmunity and tolerance.
    Curr Opin Immunol. 2011 Dec;23(6):761-8 PMID: 22115876
  41. IL-2 receptor beta-dependent STAT5 activation is required for the development of Foxp3+ regulatory T cells.
    J Immunol. 2007 Jan 1;178(1):280-90 PMID: 17182565
  42. Treg induction by a rationally selected mixture of Clostridia strains from the human microbiota.
    Nature. 2013 Aug 8;500(7461):232-6 PMID: 23842501
  43. Hygiene hypothesis in inflammatory bowel disease: a critical review of the literature.
    World J Gastroenterol. 2008 Jan 14;14(2):165-73 PMID: 18186549
  44. Epigenome targeting by probiotic metabolites.
    Gut Pathog. 2010 Dec 21;2(1):24 PMID: 21172038
  45. Regulation of Treg functionality by acetylation-mediated Foxp3 protein stabilization.
    Blood. 2010 Feb 4;115(5):965-74 PMID: 19996091
  46. Regulatory T cells: recommendations to simplify the nomenclature.
    Nat Immunol. 2013 Apr;14(4):307-8 PMID: 23507634
  47. UHRF1 binds G9a and participates in p21 transcriptional regulation in mammalian cells.
    Nucleic Acids Res. 2009 Feb;37(2):493-505 PMID: 19056828
  48. Segmented filamentous bacteria antigens presented by intestinal dendritic cells drive mucosal Th17 cell differentiation.
    Immunity. 2014 Apr 17;40(4):594-607 PMID: 24684957
  49. A microbial symbiosis factor prevents intestinal inflammatory disease.
    Nature. 2008 May 29;453(7195):620-5 PMID: 18509436
  50. Induction of colonic regulatory T cells by indigenous Clostridium species.
    Science. 2011 Jan 21;331(6015):337-41 PMID: 21205640
  51. Neuropilin 1 is expressed on thymus-derived natural regulatory T cells, but not mucosa-generated induced Foxp3+ T reg cells.
    J Exp Med. 2012 Sep 24;209(10):1723-42, S1 PMID: 22966001
  52. Induction of Treg cells in the mouse colonic mucosa: a central mechanism to maintain host-microbiota homeostasis.
    Semin Immunol. 2012 Feb;24(1):50-7 PMID: 22172550
  53. ATP drives lamina propria T(H)17 cell differentiation.
    Nature. 2008 Oct 9;455(7214):808-12 PMID: 18716618
  54. Commensal bacteria at the interface of host metabolism and the immune system.
    Nat Immunol. 2013 Jul;14(7):676-84 PMID: 23778795
  55. Asthma: an epidemic of dysregulated immunity.
    Nat Immunol. 2002 Aug;3(8):715-20 PMID: 12145657
  56. Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases.
    Proc Natl Acad Sci U S A. 2007 Aug 21;104(34):13780-5 PMID: 17699621
  57. Acetylated, propionylated or butyrylated starches raise large bowel short-chain fatty acids preferentially when fed to rats.
    J Nutr. 2003 Nov;133(11):3523-8 PMID: 14608068
  58. Transcriptional regulation by histone ubiquitination and deubiquitination.
    Genes Dev. 2003 Nov 15;17(22):2733-40 PMID: 14630937
  59. The microbiology of butyrate formation in the human colon.
    FEMS Microbiol Lett. 2002 Dec 17;217(2):133-9 PMID: 12480096
  60. Methylation in the p21WAF1/cip1 promoter of Apc+/-, p21+/- mice and lack of response to sulindac.
    Oncogene. 2005 Mar 17;24(12):2104-9 PMID: 15688007
  61. Control of cell cycle transcription during G1 and S phases.
    Nat Rev Mol Cell Biol. 2013 Aug;14(8):518-28 PMID: 23877564
  62. Expression of Helios, an Ikaros transcription factor family member, differentiates thymic-derived from peripherally induced Foxp3+ T regulatory cells.
    J Immunol. 2010 Apr 1;184(7):3433-41 PMID: 20181882
  63. Chromatin structure and transcription.
    Annu Rev Cell Biol. 1992;8:563-87 PMID: 1335747
  64. Activation of Gpr109a, receptor for niacin and the commensal metabolite butyrate, suppresses colonic inflammation and carcinogenesis.
    Immunity. 2014 Jan 16;40(1):128-39 PMID: 24412617
  65. The molecular basis of the memory T cell response: differential gene expression and its epigenetic regulation.
    Nat Rev Immunol. 2012 Mar 16;12(4):306-15 PMID: 22421787
  66. Commensal microbe-derived butyrate induces the differentiation of colonic regulatory T cells.
    Nature. 2013 Dec 19;504(7480):446-50 PMID: 24226770
  67. An immunomodulatory molecule of symbiotic bacteria directs maturation of the host immune system.
    Cell. 2005 Jul 15;122(1):107-18 PMID: 16009137
  68. Thymic versus induced regulatory T cells - who regulates the regulators?
    Front Immunol. 2013 Jun 27;4:169 PMID: 23818888
  69. Induction of intestinal Th17 cells by segmented filamentous bacteria.
    Cell. 2009 Oct 30;139(3):485-98 PMID: 19836068
  70. Regulation of inflammation by short chain fatty acids.
    Nutrients. 2011 Oct;3(10):858-76 PMID: 22254083
  71. A bacterial carbohydrate links innate and adaptive responses through Toll-like receptor 2.
    J Exp Med. 2006 Dec 25;203(13):2853-63 PMID: 17178920
  72. The contribution of epigenetic memory to immunologic memory.
    Curr Opin Genet Dev. 2011 Apr;21(2):154-9 PMID: 21330128
Article Info
Journal
Seminars in immunopathology
Abbr.
Semin Immunopathol
ISSN
1863-2300
Published
2015-01-00
Epub
2014-00-15
Pages
17-25
Language
English
Region
Germany
NLM ID
101308769
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com