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PMID: 22404626 Published · ppublish English Journal Article Research Support, N.I.H., Extramural Review

RNA polymerase II elongation control.

Annual review of biochemistry ·Vol. 81 ·2012-00-00 ·Pages 119-43

Zhou Q, Li T, Price DH

Abstract

Regulation of the elongation phase of transcription by RNA polymerase II (Pol II) is utilized extensively to generate the pattern of mRNAs needed to specify cell types and to respond to environmental changes. After Pol II initiates, negative elongation factors cause it to pause in a promoter proximal position. These polymerases are poised to respond to the positive transcription elongation factor P-TEFb, and then enter productive elongation only under the appropriate set of signals to generate full-length properly processed mRNAs. Recent global analyses of Pol II and elongation factors, mechanisms that regulate P-TEFb involving the 7SK small nuclear ribonucleoprotein (snRNP), factors that control both the negative and positive elongation properties of Pol II, and the mRNA processing events that are coupled with elongation are discussed.

MeSH Terms
Animals Eukaryota/metabolism Gene Expression Regulation Humans RNA Polymerase II/chemistry,metabolism Transcription Factors Transcription, Genetic
Chemicals
Transcription Factors RNA Polymerase II
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Zhou Qiang
Department of Molecular and Cell Biology, University of California, Berkeley, California 94720, USA. qzhou@berkeley.edu
Li Tiandao
Price David H
References (171)
171 references, click to expand
  1. A La-related protein modulates 7SK snRNP integrity to suppress P-TEFb-dependent transcriptional elongation and tumorigenesis.
    Mol Cell. 2008 Mar 14;29(5):588-99 PMID: 18249148
  2. Control of transcriptional elongation and cotranscriptional histone modification by the yeast BUR kinase substrate Spt5.
    Proc Natl Acad Sci U S A. 2009 Apr 28;106(17):6956-61 PMID: 19365074
  3. RNA polymerase II transcription complexes may become arrested if the nascent RNA is shortened to less than 50 nucleotides.
    J Biol Chem. 2002 Sep 6;277(36):32527-37 PMID: 12087087
  4. Distinct roles for CTD Ser-2 and Ser-5 phosphorylation in the recruitment and allosteric activation of mammalian mRNA capping enzyme.
    Mol Cell. 1999 Mar;3(3):405-11 PMID: 10198643
  5. mRNA capping enzyme is recruited to the transcription complex by phosphorylation of the RNA polymerase II carboxy-terminal domain.
    Genes Dev. 1997 Dec 15;11(24):3319-26 PMID: 9407025
  6. LARP7 is a stable component of the 7SK snRNP while P-TEFb, HEXIM1 and hnRNP A1 are reversibly associated.
    Nucleic Acids Res. 2008 Apr;36(7):2219-29 PMID: 18281698
  7. Exporting RNA from the nucleus to the cytoplasm.
    Nat Rev Mol Cell Biol. 2007 Oct;8(10):761-73 PMID: 17786152
  8. The prolyl isomerase Pin1 functions in mitotic chromosome condensation.
    Mol Cell. 2007 Apr 27;26(2):287-300 PMID: 17466629
  9. Recruitment of P-TEFb for stimulation of transcriptional elongation by the bromodomain protein Brd4.
    Mol Cell. 2005 Aug 19;19(4):535-45 PMID: 16109377
  10. Dynamic remodelling of human 7SK snRNP controls the nuclear level of active P-TEFb.
    EMBO J. 2007 Aug 8;26(15):3570-80 PMID: 17611602
  11. Cellular control of gene expression by T-type cyclin/CDK9 complexes.
    Gene. 2004 Aug 4;337:15-23 PMID: 15276198
  12. Characterization of Cdk9(55) and differential regulation of two Cdk9 isoforms.
    Gene. 2005 Apr 25;350(1):51-8 PMID: 15780980
  13. Purification of P-TEFb, a transcription factor required for the transition into productive elongation.
    J Biol Chem. 1995 May 26;270(21):12335-8 PMID: 7759473
  14. NELF, a multisubunit complex containing RD, cooperates with DSIF to repress RNA polymerase II elongation.
    Cell. 1999 Apr 2;97(1):41-51 PMID: 10199401
  15. CYCLINg through transcription: posttranslational modifications of P-TEFb regulate transcription elongation.
    Cell Cycle. 2010 May;9(9):1697-705 PMID: 20436276
  16. Interaction between cyclin T1 and SCF(SKP2) targets CDK9 for ubiquitination and degradation by the proteasome.
    Mol Cell Biol. 2001 Dec;21(23):7956-70 PMID: 11689688
  17. Structure, mechanism, and evolution of the mRNA capping apparatus.
    Prog Nucleic Acid Res Mol Biol. 2001;66:1-40 PMID: 11051760
  18. New insights into the control of HIV-1 transcription: when Tat meets the 7SK snRNP and super elongation complex (SEC).
    J Neuroimmune Pharmacol. 2011 Jun;6(2):260-8 PMID: 21360054
  19. AFF4, a component of the ELL/P-TEFb elongation complex and a shared subunit of MLL chimeras, can link transcription elongation to leukemia.
    Mol Cell. 2010 Feb 12;37(3):429-37 PMID: 20159561
  20. c-Myc regulates transcriptional pause release.
    Cell. 2010 Apr 30;141(3):432-45 PMID: 20434984
  21. Exchange of RNA polymerase II initiation and elongation factors during gene expression in vivo.
    Mol Cell. 2002 Apr;9(4):799-809 PMID: 11983171
  22. Nuclear organization and dynamics of 7SK RNA in regulating gene expression.
    Mol Biol Cell. 2010 Dec;21(23):4184-96 PMID: 20881057
  23. Complex protein interactions within the human polyadenylation machinery identify a novel component.
    Mol Cell Biol. 2000 Mar;20(5):1515-25 PMID: 10669729
  24. TIF1gamma controls erythroid cell fate by regulating transcription elongation.
    Cell. 2010 Jul 9;142(1):133-43 PMID: 20603019
  25. Identification of a decay in transcription potential that results in elongation factor dependence of RNA polymerase II.
    J Biol Chem. 1995 May 12;270(19):11238-44 PMID: 7744757
  26. Tat competes with HEXIM1 to increase the active pool of P-TEFb for HIV-1 transcription.
    Nucleic Acids Res. 2007;35(6):2003-12 PMID: 17341462
  27. 5,6-Dichloro-1-beta-D-ribofuranosylbenzimidazole inhibits transcription elongation by RNA polymerase II in vitro.
    J Biol Chem. 1989 Feb 5;264(4):2250-7 PMID: 2914905
  28. Bidirectional promoters generate pervasive transcription in yeast.
    Nature. 2009 Feb 19;457(7232):1033-7 PMID: 19169243
  29. Analysis of the large inactive P-TEFb complex indicates that it contains one 7SK molecule, a dimer of HEXIM1 or HEXIM2, and two P-TEFb molecules containing Cdk9 phosphorylated at threonine 186.
    J Biol Chem. 2005 Aug 5;280(31):28819-26 PMID: 15965233
  30. Myc Regulation of mRNA Cap Methylation.
    Genes Cancer. 2010 Jun;1(6):576-579 PMID: 21170289
  31. A higher-order complex containing AF4 and ENL family proteins with P-TEFb facilitates oncogenic and physiologic MLL-dependent transcription.
    Cancer Cell. 2010 Feb 17;17(2):198-212 PMID: 20153263
  32. Phosphorylation of RNAPII: To P-TEFb or not to P-TEFb?
    Transcription. 2011 May;2(3):115-119 PMID: 21826281
  33. RNA polymerase II elongation factors of Saccharomyces cerevisiae: a targeted proteomics approach.
    Mol Cell Biol. 2002 Oct;22(20):6979-92 PMID: 12242279
  34. Promoter-proximal Pol II: when stalling speeds things up.
    Cell Cycle. 2008 Jun 1;7(11):1539-44 PMID: 18469524
  35. RNA polymerase II is a glycoprotein. Modification of the COOH-terminal domain by O-GlcNAc.
    J Biol Chem. 1993 May 15;268(14):10416-24 PMID: 8486697
  36. Increased phosphorylation of the carboxyl-terminal domain of RNA polymerase II and loading of polyadenylation and cotranscriptional factors contribute to regulation of the ig heavy chain mRNA in plasma cells.
    J Immunol. 2007 Dec 1;179(11):7663-73 PMID: 18025212
  37. Flavopiridol inactivates P-TEFb and blocks most RNA polymerase II transcription in vivo.
    J Biol Chem. 2001 Aug 24;276(34):31793-9 PMID: 11431468
  38. Distinction and relationship between elongation rate and processivity of RNA polymerase II in vivo.
    Mol Cell. 2005 Mar 18;17(6):831-40 PMID: 15780939
  39. DSIF, the Paf1 complex, and Tat-SF1 have nonredundant, cooperative roles in RNA polymerase II elongation.
    Genes Dev. 2009 Dec 1;23(23):2765-77 PMID: 19952111
  40. A human immunodeficiency virus type 1 Tat-like arginine-rich RNA-binding domain is essential for HEXIM1 to inhibit RNA polymerase II transcription through 7SK snRNA-mediated inactivation of P-TEFb.
    Mol Cell Biol. 2004 Jun;24(12):5094-105 PMID: 15169877
  41. HEXIM2, a HEXIM1-related protein, regulates positive transcription elongation factor b through association with 7SK.
    J Biol Chem. 2005 Apr 22;280(16):16360-7 PMID: 15713662
  42. HIV-1 Tat and host AFF4 recruit two transcription elongation factors into a bifunctional complex for coordinated activation of HIV-1 transcription.
    Mol Cell. 2010 May 14;38(3):428-38 PMID: 20471948
  43. Phosphorylated positive transcription elongation factor b (P-TEFb) is tagged for inhibition through association with 7SK snRNA.
    J Biol Chem. 2004 Feb 6;279(6):4153-60 PMID: 14627702
  44. Cloning of ELL, a gene that fuses to MLL in a t(11;19)(q23;p13.1) in acute myeloid leukemia.
    Proc Natl Acad Sci U S A. 1994 Dec 6;91(25):12110-4 PMID: 7991593
  45. CDK9: from basal transcription to cancer and AIDS.
    Cancer Biol Ther. 2002 Jul-Aug;1(4):342-7 PMID: 12432243
  46. Human Polymerase-Associated Factor complex (PAFc) connects the Super Elongation Complex (SEC) to RNA polymerase II on chromatin.
    Proc Natl Acad Sci U S A. 2011 Sep 6;108(36):E636-45 PMID: 21873227
  47. Control of inducible gene expression by signal-dependent transcriptional elongation.
    Cell. 2009 Jul 10;138(1):129-45 PMID: 19596240
  48. The splicing factor SC35 has an active role in transcriptional elongation.
    Nat Struct Mol Biol. 2008 Aug;15(8):819-26 PMID: 18641664
  49. Characterization of the Schizosaccharomyces pombe Cdk9/Pch1 protein kinase: Spt5 phosphorylation, autophosphorylation, and mutational analysis.
    J Biol Chem. 2003 Oct 31;278(44):43346-56 PMID: 12904290
  50. RNA polymerase II and the integration of nuclear events.
    Genes Dev. 2000 Jun 15;14(12):1415-29 PMID: 10859161
  51. P-TEFb, a cyclin-dependent kinase controlling elongation by RNA polymerase II.
    Mol Cell Biol. 2000 Apr;20(8):2629-34 PMID: 10733565
  52. Transcription elongation factor hSPT5 stimulates mRNA capping.
    Genes Dev. 1999 Jul 15;13(14):1774-9 PMID: 10421630
  53. The structure of P-TEFb (CDK9/cyclin T1), its complex with flavopiridol and regulation by phosphorylation.
    EMBO J. 2008 Jul 9;27(13):1907-18 PMID: 18566585
  54. The human PAF1 complex acts in chromatin transcription elongation both independently and cooperatively with SII/TFIIS.
    Cell. 2010 Feb 19;140(4):491-503 PMID: 20178742
  55. Functional interaction of yeast pre-mRNA 3' end processing factors with RNA polymerase II.
    Mol Cell. 2002 May;9(5):1101-11 PMID: 12049745
  56. Relief of two built-In autoinhibitory mechanisms in P-TEFb is required for assembly of a multicomponent transcription elongation complex at the human immunodeficiency virus type 1 promoter.
    Mol Cell Biol. 2000 Aug;20(16):5897-907 PMID: 10913173
  57. Widespread bidirectional promoters are the major source of cryptic transcripts in yeast.
    Nature. 2009 Feb 19;457(7232):1038-42 PMID: 19169244
  58. Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters.
    Science. 2008 Dec 19;322(5909):1845-8 PMID: 19056941
  59. Rates of in situ transcription and splicing in large human genes.
    Nat Struct Mol Biol. 2009 Nov;16(11):1128-33 PMID: 19820712
  60. The C-terminal domain of the largest subunit of RNA polymerase II interacts with a novel set of serine/arginine-rich proteins.
    Proc Natl Acad Sci U S A. 1996 Jul 9;93(14):6975-80 PMID: 8692929
  61. Isolation of three proteins that bind to mammalian RNA polymerase II.
    J Biol Chem. 1985 Aug 25;260(18):10353-60 PMID: 3860504
  62. Divergent transcription: a new feature of active promoters.
    Cell Cycle. 2009 Aug 15;8(16):2557-64 PMID: 19597342
  63. Crystal structure of HIV-1 Tat complexed with human P-TEFb.
    Nature. 2010 Jun 10;465(7299):747-51 PMID: 20535204
  64. Regulation of the transcriptional activity of poised RNA polymerase II by the elongation factor ELL.
    Proc Natl Acad Sci U S A. 2008 Jun 24;105(25):8575-9 PMID: 18562276
  65. A capping-independent function of MePCE in stabilizing 7SK snRNA and facilitating the assembly of 7SK snRNP.
    Nucleic Acids Res. 2010 Jan;38(2):360-9 PMID: 19906723
  66. The mechanism of release of P-TEFb and HEXIM1 from the 7SK snRNP by viral and cellular activators includes a conformational change in 7SK.
    PLoS One. 2010 Aug 23;5(8):e12335 PMID: 20808803
  67. Controlling the elongation phase of transcription with P-TEFb.
    Mol Cell. 2006 Aug 4;23(3):297-305 PMID: 16885020
  68. Cleavage/polyadenylation factor IA associates with the carboxyl-terminal domain of RNA polymerase II in Saccharomyces cerevisiae.
    Proc Natl Acad Sci U S A. 2001 Jan 16;98(2):445-50 PMID: 11149954
  69. Inhibition of HIV-1 replication by P-TEFb inhibitors DRB, seliciclib and flavopiridol correlates with release of free P-TEFb from the large, inactive form of the complex.
    Retrovirology. 2007 Jul 11;4:47 PMID: 17625008
  70. RNA-mediated displacement of an inhibitory snRNP complex activates transcription elongation.
    Nat Struct Mol Biol. 2010 Jul;17(7):815-21 PMID: 20562857
  71. CDK-9/cyclin T (P-TEFb) is required in two postinitiation pathways for transcription in the C. elegans embryo.
    Genes Dev. 2002 Aug 15;16(16):2135-46 PMID: 12183367
  72. Role of the cyclin-dependent kinase 9-related pathway in mammalian gene expression and human diseases.
    Cell Cycle. 2008 Dec;7(23):3664-8 PMID: 19029809
  73. CDK9 a potential target for drug development.
    Med Chem. 2008 May;4(3):210-8 PMID: 18473913
  74. Controlling cellular P-TEFb activity by the HIV-1 transcriptional transactivator Tat.
    PLoS Pathog. 2010 Oct 14;6(10):e1001152 PMID: 20976203
  75. The transcription-dependent dissociation of P-TEFb-HEXIM1-7SK RNA relies upon formation of hnRNP-7SK RNA complexes.
    Mol Cell Biol. 2007 Oct;27(20):6996-7006 PMID: 17709395
  76. ELL2, a new member of an ELL family of RNA polymerase II elongation factors.
    Proc Natl Acad Sci U S A. 1997 Apr 15;94(8):3639-43 PMID: 9108030
  77. Specific regulation of mRNA cap methylation by the c-Myc and E2F1 transcription factors.
    Oncogene. 2009 Mar 5;28(9):1169-75 PMID: 19137018
  78. Dynamic interaction between a Drosophila transcription factor and RNA polymerase II.
    Mol Cell Biol. 1989 Apr;9(4):1465-75 PMID: 2725511
  79. P-TEFb stimulates transcription elongation and pre-mRNA splicing through multilateral mechanisms.
    RNA Biol. 2010 Mar-Apr;7(2):145-50 PMID: 20305375
  80. Licensed to elongate: a molecular mechanism for MLL-based leukaemogenesis.
    Nat Rev Cancer. 2010 Oct;10(10):721-8 PMID: 20844554
  81. Complexity in transcription control at the activation domain-mediator interface.
    Sci Signal. 2009 May 05;2(69):ra20 PMID: 19417216
  82. The carboxy terminal domain of RNA polymerase II and alternative splicing.
    Trends Biochem Sci. 2010 Sep;35(9):497-504 PMID: 20418102
  83. Dynamics of human immunodeficiency virus transcription: P-TEFb phosphorylates RD and dissociates negative effectors from the transactivation response element.
    Mol Cell Biol. 2004 Jan;24(2):787-95 PMID: 14701750
  84. The Spt6 SH2 domain binds Ser2-P RNAPII to direct Iws1-dependent mRNA splicing and export.
    Genes Dev. 2007 Jan 15;21(2):160-74 PMID: 17234882
  85. An RNA polymerase II elongation factor encoded by the human ELL gene.
    Science. 1996 Mar 29;271(5257):1873-6 PMID: 8596958
  86. Transcriptional activators enhance polyadenylation of mRNA precursors.
    Mol Cell. 2011 Feb 18;41(4):409-18 PMID: 21329879
  87. Identification of a cyclin T-binding domain in Hexim1 and biochemical analysis of its binding competition with HIV-1 Tat.
    J Biol Chem. 2005 Jul 1;280(26):24968-77 PMID: 15855166
  88. The super elongation complex (SEC) and MLL in development and disease.
    Genes Dev. 2011 Apr 1;25(7):661-72 PMID: 21460034
  89. Functional coupling of capping and transcription of mRNA.
    Mol Cell. 2002 Sep;10(3):599-609 PMID: 12408827
  90. A chromatin landmark and transcription initiation at most promoters in human cells.
    Cell. 2007 Jul 13;130(1):77-88 PMID: 17632057
  91. Molecular evidence indicating that the yeast PAF complex is required for transcription elongation.
    EMBO Rep. 2004 Jan;5(1):47-53 PMID: 14710186
  92. Efficient release from promoter-proximal stall sites requires transcript cleavage factor TFIIS.
    Mol Cell. 2005 Jan 7;17(1):103-12 PMID: 15629721
  93. Repression of RNA polymerase II elongation in vivo is critically dependent on the C-terminus of Spt5.
    PLoS One. 2009 Sep 09;4(9):e6918 PMID: 19742326
  94. Structure-function relationship of yeast S-II in terms of stimulation of RNA polymerase II, arrest relief, and suppression of 6-azauracil sensitivity.
    J Biol Chem. 1995 Apr 14;270(15):8991-5 PMID: 7721809
  95. RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo.
    Nat Genet. 2007 Dec;39(12):1512-6 PMID: 17994019
  96. RNA polymerase is poised for activation across the genome.
    Nat Genet. 2007 Dec;39(12):1507-11 PMID: 17994021
  97. 7SK snRNP/P-TEFb couples transcription elongation with alternative splicing and is essential for vertebrate development.
    Proc Natl Acad Sci U S A. 2009 May 12;106(19):7798-803 PMID: 19416841
  98. Manipulation of P-TEFb control machinery by HIV: recruitment of P-TEFb from the large form by Tat and binding of HEXIM1 to TAR.
    Nucleic Acids Res. 2007;35(13):4347-58 PMID: 17576689
  99. Elongation by RNA polymerase II: the short and long of it.
    Genes Dev. 2004 Oct 15;18(20):2437-68 PMID: 15489290
  100. 7SK small nuclear RNA binds to and inhibits the activity of CDK9/cyclin T complexes.
    Nature. 2001 Nov 15;414(6861):322-5 PMID: 11713533
  101. Uniform transitions of the general RNA polymerase II transcription complex.
    Nat Struct Mol Biol. 2010 Oct;17(10):1272-8 PMID: 20818391
  102. The oncogenic capacity of HRX-ENL requires the transcriptional transactivation activity of ENL and the DNA binding motifs of HRX.
    Mol Cell Biol. 1998 Jan;18(1):122-9 PMID: 9418860
  103. Properties of RNA polymerase II elongation complexes before and after the P-TEFb-mediated transition into productive elongation.
    J Biol Chem. 2007 Jul 27;282(30):21901-12 PMID: 17548348
  104. Drosophila ELL is associated with actively elongating RNA polymerase II on transcriptionally active sites in vivo.
    EMBO J. 2001 Nov 1;20(21):6104-14 PMID: 11689450
  105. Regulation of TAK/P-TEFb in CD4+ T lymphocytes and macrophages.
    Curr HIV Res. 2003 Oct;1(4):395-404 PMID: 15049426
  106. The Myc transactivation domain promotes global phosphorylation of the RNA polymerase II carboxy-terminal domain independently of direct DNA binding.
    Mol Cell Biol. 2007 Mar;27(6):2059-73 PMID: 17242204
  107. Three RNA polymerase II carboxyl-terminal domain kinases display distinct substrate preferences.
    J Biol Chem. 2001 Apr 6;276(14):10913-20 PMID: 11278802
  108. Functional interactions of RNA-capping enzyme with factors that positively and negatively regulate promoter escape by RNA polymerase II.
    Proc Natl Acad Sci U S A. 2004 May 18;101(20):7572-7 PMID: 15136722
  109. Interplay between 7SK snRNA and oppositely charged regions in HEXIM1 direct the inhibition of P-TEFb.
    EMBO J. 2005 Dec 21;24(24):4291-303 PMID: 16362050
  110. Evidence that negative elongation factor represses transcription elongation through binding to a DRB sensitivity-inducing factor/RNA polymerase II complex and RNA.
    Mol Cell Biol. 2002 May;22(9):2918-27 PMID: 11940650
  111. The PAF complex synergizes with MLL fusion proteins at HOX loci to promote leukemogenesis.
    Cancer Cell. 2010 Jun 15;17(6):609-21 PMID: 20541477
  112. Paused RNA polymerase II as a developmental checkpoint.
    Cell. 2011 May 13;145(4):502-11 PMID: 21565610
  113. DSIF, a novel transcription elongation factor that regulates RNA polymerase II processivity, is composed of human Spt4 and Spt5 homologs.
    Genes Dev. 1998 Feb 1;12(3):343-56 PMID: 9450929
  114. Systematic analysis of the protein interaction network for the human transcription machinery reveals the identity of the 7SK capping enzyme.
    Mol Cell. 2007 Jul 20;27(2):262-74 PMID: 17643375
  115. The C-terminal domain of RNA polymerase II couples mRNA processing to transcription.
    Nature. 1997 Jan 23;385(6614):357-61 PMID: 9002523
  116. Kaposi's sarcoma-associated herpesvirus K-cyclin interacts with Cdk9 and stimulates Cdk9-mediated phosphorylation of p53 tumor suppressor.
    J Virol. 2008 Jan;82(1):278-90 PMID: 17942552
  117. Cdk9 is an essential kinase in Drosophila that is required for heat shock gene expression, histone methylation and elongation factor recruitment.
    Mol Genet Genomics. 2007 Feb;277(2):101-14 PMID: 17001490
  118. The Paf1 complex: platform or player in RNA polymerase II transcription?
    Biochim Biophys Acta. 2010 May-Jun;1799(5-6):379-88 PMID: 20060942
  119. Alternative pre-mRNA splicing and proteome expansion in metazoans.
    Nature. 2002 Jul 11;418(6894):236-43 PMID: 12110900
  120. The double bromodomain-containing chromatin adaptor Brd4 and transcriptional regulation.
    J Biol Chem. 2007 May 4;282(18):13141-5 PMID: 17329240
  121. A highly purified RNA polymerase II elongation control system.
    J Biol Chem. 2001 Nov 9;276(45):42601-9 PMID: 11553615
  122. Conserved P-TEFb-interacting domain of BRD4 inhibits HIV transcription.
    Proc Natl Acad Sci U S A. 2007 Aug 21;104(34):13690-5 PMID: 17690245
  123. Transcript cleavage factors GreA and GreB act as transient catalytic components of RNA polymerase.
    EMBO J. 2003 Dec 1;22(23):6322-34 PMID: 14633991
  124. Global analysis of short RNAs reveals widespread promoter-proximal stalling and arrest of Pol II in Drosophila.
    Science. 2010 Jan 15;327(5963):335-8 PMID: 20007866
  125. Kin28, the TFIIH-associated carboxy-terminal domain kinase, facilitates the recruitment of mRNA processing machinery to RNA polymerase II.
    Mol Cell Biol. 2000 Jan;20(1):104-12 PMID: 10594013
  126. Misguided transcriptional elongation causes mixed lineage leukemia.
    PLoS Biol. 2009 Nov;7(11):e1000249 PMID: 19956800
  127. Antisense RNA polymerase II divergent transcripts are P-TEFb dependent and substrates for the RNA exosome.
    Proc Natl Acad Sci U S A. 2011 Jun 28;108(26):10460-5 PMID: 21670248
  128. The tumor suppressor Cdc73 functionally associates with CPSF and CstF 3' mRNA processing factors.
    Proc Natl Acad Sci U S A. 2009 Jan 20;106(3):755-60 PMID: 19136632
  129. CDK12 is a transcription elongation-associated CTD kinase, the metazoan ortholog of yeast Ctk1.
    Genes Dev. 2010 Oct 15;24(20):2303-16 PMID: 20952539
  130. Dynamic transcriptional events in embryonic stem cells mediated by the super elongation complex (SEC).
    Genes Dev. 2011 Jul 15;25(14):1486-98 PMID: 21764852
  131. P-TEFb-mediated phosphorylation of hSpt5 C-terminal repeats is critical for processive transcription elongation.
    Mol Cell. 2006 Jan 20;21(2):227-37 PMID: 16427012
  132. Control of formation of two distinct classes of RNA polymerase II elongation complexes.
    Mol Cell Biol. 1992 May;12(5):2078-90 PMID: 1569941
  133. Factors involved in specific transcription by mammalian RNA polymerase II. Factors IIE and IIF independently interact with RNA polymerase II.
    J Biol Chem. 1989 May 25;264(15):8913-21 PMID: 2566609
  134. Tat-associated kinase, TAK, activity is regulated by distinct mechanisms in peripheral blood lymphocytes and promonocytic cell lines.
    J Virol. 1998 Dec;72(12):9881-8 PMID: 9811724
  135. The La-related protein LARP7 is a component of the 7SK ribonucleoprotein and affects transcription of cellular and viral polymerase II genes.
    EMBO Rep. 2008 Jun;9(6):569-75 PMID: 18483487
  136. A hyperphosphorylated form of the large subunit of RNA polymerase II is associated with splicing complexes and the nuclear matrix.
    Proc Natl Acad Sci U S A. 1996 Aug 6;93(16):8253-7 PMID: 8710856
  137. Binding of the 7SK snRNA turns the HEXIM1 protein into a P-TEFb (CDK9/cyclin T) inhibitor.
    EMBO J. 2004 Jul 7;23(13):2608-19 PMID: 15201869
  138. Phosphorylation dependence of the initiation of productive transcription of Balbiani ring 2 genes in living cells.
    Chromosoma. 1996 Mar;104(6):422-33 PMID: 8601337
  139. The 7SK small nuclear RNA inhibits the CDK9/cyclin T1 kinase to control transcription.
    Nature. 2001 Nov 15;414(6861):317-22 PMID: 11713532
  140. Identification of multiple cyclin subunits of human P-TEFb.
    Genes Dev. 1998 Mar 1;12(5):755-62 PMID: 9499409
  141. Transcription elongation factor ELL2 directs immunoglobulin secretion in plasma cells by stimulating altered RNA processing.
    Nat Immunol. 2009 Oct;10(10):1102-9 PMID: 19749764
  142. Rules of engagement: co-transcriptional recruitment of pre-mRNA processing factors.
    Curr Opin Cell Biol. 2005 Jun;17(3):251-6 PMID: 15901493
  143. SR proteins function in coupling RNAP II transcription to pre-mRNA splicing.
    Mol Cell. 2007 Jun 22;26(6):867-81 PMID: 17588520
  144. Stimulatory effect of splicing factors on transcriptional elongation.
    Nature. 2001 Dec 20-27;414(6866):929-33 PMID: 11780068
  145. Different phosphorylated forms of RNA polymerase II and associated mRNA processing factors during transcription.
    Genes Dev. 2000 Oct 1;14(19):2452-60 PMID: 11018013
  146. The tumor suppressor parafibromin is required for posttranscriptional processing of histone mRNA.
    Mol Carcinog. 2010 Mar;49(3):215-23 PMID: 19908240
  147. Promoting elongation with transcript cleavage stimulatory factors.
    Biochim Biophys Acta. 2002 Sep 13;1577(2):287-307 PMID: 12213659
  148. Divergent transcription from active promoters.
    Science. 2008 Dec 19;322(5909):1849-51 PMID: 19056940
  149. Compensatory contributions of HEXIM1 and HEXIM2 in maintaining the balance of active and inactive positive transcription elongation factor b complexes for control of transcription.
    J Biol Chem. 2005 Apr 22;280(16):16368-76 PMID: 15713661
  150. CDK9 autophosphorylation regulates high-affinity binding of the human immunodeficiency virus type 1 tat-P-TEFb complex to TAR RNA.
    Mol Cell Biol. 2000 Sep;20(18):6958-69 PMID: 10958691
  151. Short transcripts of the ternary complex provide insight into RNA polymerase II elongational pausing.
    J Mol Biol. 1995 Oct 6;252(5):522-35 PMID: 7563071
  152. Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution.
    Science. 2001 Jun 8;292(5523):1863-76 PMID: 11313498
  153. Control of RNA polymerase II elongation potential by a novel carboxyl-terminal domain kinase.
    J Biol Chem. 1996 Oct 25;271(43):27176-83 PMID: 8900211
  154. dELL is an essential RNA polymerase II elongation factor with a general role in development.
    Proc Natl Acad Sci U S A. 2002 Jul 23;99(15):9894-9 PMID: 12096188
  155. Role of the HIV-1 positive elongation factor P-TEFb and inhibitors thereof.
    Mini Rev Med Chem. 2009 Mar;9(3):379-85 PMID: 19275730
  156. HIV-1 Tat assembles a multifunctional transcription elongation complex and stably associates with the 7SK snRNP.
    Mol Cell. 2010 May 14;38(3):439-51 PMID: 20471949
  157. Cyclin-dependent kinase 9-cyclin K functions in the replication stress response.
    EMBO Rep. 2010 Nov;11(11):876-82 PMID: 20930849
  158. Upregulation of cyclin T1/CDK9 complexes during T cell activation.
    Oncogene. 1998 Dec 17;17(24):3093-102 PMID: 9872325
  159. miR-198 inhibits HIV-1 gene expression and replication in monocytes and its mechanism of action appears to involve repression of cyclin T1.
    PLoS Pathog. 2009 Jan;5(1):e1000263 PMID: 19148268
  160. The Yin and Yang of P-TEFb regulation: implications for human immunodeficiency virus gene expression and global control of cell growth and differentiation.
    Microbiol Mol Biol Rev. 2006 Sep;70(3):646-59 PMID: 16959964
  161. RNA polymerase II targets pre-mRNA splicing factors to transcription sites in vivo.
    Mol Cell. 1999 Jun;3(6):697-705 PMID: 10394358
  162. Human mediator subunit MED26 functions as a docking site for transcription elongation factors.
    Cell. 2011 Jul 8;146(1):92-104 PMID: 21729782
  163. MAQ1 and 7SK RNA interact with CDK9/cyclin T complexes in a transcription-dependent manner.
    Mol Cell Biol. 2003 Jul;23(14):4859-69 PMID: 12832472
  164. Genomic location of the human RNA polymerase II general machinery: evidence for a role of TFIIF and Rpb7 at both early and late stages of transcription.
    Biochem J. 2008 Jan 1;409(1):139-47 PMID: 17848138
  165. Chromosomal rearrangements leading to MLL gene fusions: clinical and biological aspects.
    Cancer Res. 2008 Dec 15;68(24):10024-7 PMID: 19074864
  166. Mechanisms controlling CDK9 activity.
    Front Biosci. 2006 Sep 01;11:2598-613 PMID: 16720337
  167. Evidence that transcript cleavage is essential for RNA polymerase II transcription and cell viability.
    Mol Cell. 2010 Apr 23;38(2):202-10 PMID: 20417599
  168. Identification, cloning, expression, and biochemical characterization of the testis-specific RNA polymerase II elongation factor ELL3.
    J Biol Chem. 2000 Oct 13;275(41):32052-6 PMID: 10882741
  169. Cracking the RNA polymerase II CTD code.
    Trends Genet. 2008 Jun;24(6):280-8 PMID: 18457900
  170. Cyclin K functions as a CDK9 regulatory subunit and participates in RNA polymerase II transcription.
    J Biol Chem. 1999 Dec 3;274(49):34527-30 PMID: 10574912
  171. 7SK RNA, a non-coding RNA regulating P-TEFb, a general transcription factor.
    RNA Biol. 2009 Apr-Jun;6(2):122-8 PMID: 19246988
Article Info
Journal
Annual review of biochemistry
Abbr.
Annu Rev Biochem
ISSN
1545-4509
Published
2012-00-00
Epub
2012-00-09
Pages
119-43
Language
English
Region
United States
NLM ID
2985150R
PMCID
PMC4273853
Subset
IM
Grants
NIAID NIH HHS · R21 AI074392 · United States
NIAID NIH HHS · AI095057 · United States
NIGMS NIH HHS · R01 GM035500 · United States
NIAID NIH HHS · R33 AI074392 · United States
NIAID NIH HHS · R01 AI041757 · United States
NIAID NIH HHS · AI074392 · United States
NIAID NIH HHS · AI41757 · United States
NIGMS NIH HHS · GM35500 · United States
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