Home LiteratureArticle Details
PMID: 22031696 Published · ppublish English Journal Article

Activation mechanism of the β2-adrenergic receptor.

Dror RO, Arlow DH, Maragakis P, Mildorf TJ, Pan AC, Xu H, Borhani DW, Shaw DE

Abstract

A third of marketed drugs act by binding to a G-protein-coupled receptor (GPCR) and either triggering or preventing receptor activation. Although recent crystal structures have provided snapshots of both active and inactive functional states of GPCRs, these structures do not reveal the mechanism by which GPCRs transition between these states. Here we propose an activation mechanism for the β(2)-adrenergic receptor, a prototypical GPCR, based on atomic-level simulations in which an agonist-bound receptor transitions spontaneously from the active to the inactive crystallographically observed conformation. A loosely coupled allosteric network, comprising three regions that can each switch individually between multiple distinct conformations, links small perturbations at the extracellular drug-binding site to large conformational changes at the intracellular G-protein-binding site. Our simulations also exhibit an intermediate that may represent a receptor conformation to which a G protein binds during activation, and suggest that the first structural changes during receptor activation often take place on the intracellular side of the receptor, far from the drug-binding site. By capturing this fundamental signaling process in atomic detail, our results may provide a foundation for the design of drugs that control receptor signaling more precisely by stabilizing specific receptor conformations.

MeSH Terms
Allosteric Site Amino Acid Motifs Binding Sites Catalytic Domain Computer Simulation Crystallography, X-Ray/methods GTP-Binding Proteins/chemistry Humans Ligands Models, Biological Molecular Conformation Protein Conformation Protons Receptors, Adrenergic, beta-2/metabolism Signal Transduction Tyrosine/chemistry
Chemicals
Ligands Protons Receptors, Adrenergic, beta-2 Tyrosine GTP-Binding Proteins
Authors & Affiliations
8 authors, click to expand affiliations / ORCID
Dror Ron O
DE Shaw Research, New York, NY 10036, USA. Ron.Dror@DEShawResearch.com
Arlow Daniel H
Maragakis Paul
Mildorf Thomas J
Pan Albert C
Xu Huafeng
Borhani David W
Shaw David E
References (38)
38 references, click to expand
  1. Identification of two distinct inactive conformations of the beta2-adrenergic receptor reconciles structural and biochemical observations.
    Proc Natl Acad Sci U S A. 2009 Mar 24;106(12):4689-94 PMID: 19258456
  2. Sequential binding of agonists to the beta2 adrenoceptor. Kinetic evidence for intermediate conformational states.
    J Biol Chem. 2004 Jan 2;279(1):686-91 PMID: 14559905
  3. Teaching old receptors new tricks: biasing seven-transmembrane receptors.
    Nat Rev Drug Discov. 2010 May;9(5):373-86 PMID: 20431569
  4. Crystal structure of rhodopsin: A G protein-coupled receptor.
    Science. 2000 Aug 4;289(5480):739-45 PMID: 10926528
  5. Internal hydration increases during activation of the G-protein-coupled receptor rhodopsin.
    J Mol Biol. 2008 Aug 29;381(2):478-86 PMID: 18585736
  6. Molecular mechanism of 7TM receptor activation--a global toggle switch model.
    Annu Rev Pharmacol Toxicol. 2006;46:481-519 PMID: 16402913
  7. The effect of pH on beta(2) adrenoceptor function. Evidence for protonation-dependent activation.
    J Biol Chem. 2000 Feb 4;275(5):3121-7 PMID: 10652295
  8. Functional role of the "ionic lock"--an interhelical hydrogen-bond network in family A heptahelical receptors.
    J Mol Biol. 2008 Jul 18;380(4):648-55 PMID: 18554610
  9. Conformational complexity of G-protein-coupled receptors.
    Trends Pharmacol Sci. 2007 Aug;28(8):397-406 PMID: 17629961
  10. Tracking G-protein-coupled receptor activation using genetically encoded infrared probes.
    Nature. 2010 Apr 29;464(7293):1386-9 PMID: 20383122
  11. Crystal structure of opsin in its G-protein-interacting conformation.
    Nature. 2008 Sep 25;455(7212):497-502 PMID: 18818650
  12. Structure and function of an irreversible agonist-β(2) adrenoceptor complex.
    Nature. 2011 Jan 13;469(7329):236-40 PMID: 21228876
  13. Functionally different agonists induce distinct conformations in the G protein coupling domain of the beta 2 adrenergic receptor.
    J Biol Chem. 2001 Jul 6;276(27):24433-6 PMID: 11320077
  14. Beta2 adrenergic receptor activation. Modulation of the proline kink in transmembrane 6 by a rotamer toggle switch.
    J Biol Chem. 2002 Oct 25;277(43):40989-96 PMID: 12167654
  15. Crystal structure of the ligand-free G-protein-coupled receptor opsin.
    Nature. 2008 Jul 10;454(7201):183-7 PMID: 18563085
  16. Atomistic insights into rhodopsin activation from a dynamic model.
    J Am Chem Soc. 2008 Aug 6;130(31):10141-9 PMID: 18620390
  17. Structure of an agonist-bound human A2A adenosine receptor.
    Science. 2011 Apr 15;332(6027):322-7 PMID: 21393508
  18. Crystal structure of the β2 adrenergic receptor-Gs protein complex.
    Nature. 2011 Jul 19;477(7366):549-55 PMID: 21772288
  19. Ligand binding and micro-switches in 7TM receptor structures.
    Trends Pharmacol Sci. 2009 May;30(5):249-59 PMID: 19375807
  20. Molecular dynamics investigation of primary photoinduced events in the activation of rhodopsin.
    Biophys J. 2002 Dec;83(6):3097-112 PMID: 12496081
  21. All-atom empirical potential for molecular modeling and dynamics studies of proteins.
    J Phys Chem B. 1998 Apr 30;102(18):3586-616 PMID: 24889800
  22. High-resolution crystal structure of an engineered human beta2-adrenergic G protein-coupled receptor.
    Science. 2007 Nov 23;318(5854):1258-65 PMID: 17962520
  23. High-resolution distance mapping in rhodopsin reveals the pattern of helix movement due to activation.
    Proc Natl Acad Sci U S A. 2008 May 27;105(21):7439-44 PMID: 18490656
  24. A quantitative analysis of beta-adrenergic receptor interactions: resolution of high and low affinity states of the receptor by computer modeling of ligand binding data.
    Mol Pharmacol. 1980 Jan;17(1):14-23 PMID: 6104284
  25. Structure of a nanobody-stabilized active state of the β(2) adrenoceptor.
    Nature. 2011 Jan 13;469(7329):175-80 PMID: 21228869
  26. Crystal structure of metarhodopsin II.
    Nature. 2011 Mar 31;471(7340):651-5 PMID: 21389988
  27. Functional selectivity and classical concepts of quantitative pharmacology.
    J Pharmacol Exp Ther. 2007 Jan;320(1):1-13 PMID: 16803859
  28. The hydrophobic tryptic core of the beta-adrenergic receptor retains Gs regulatory activity in response to agonists and thiols.
    J Biol Chem. 1987 Dec 5;262(34):16655-62 PMID: 2890639
  29. Highly conserved tyrosine stabilizes the active state of rhodopsin.
    Proc Natl Acad Sci U S A. 2010 Nov 16;107(46):19861-6 PMID: 21041664
  30. Structure and activation of the visual pigment rhodopsin.
    Annu Rev Biophys. 2010;39:309-28 PMID: 20192770
  31. A conserved protonation-induced switch can trigger "ionic-lock" formation in adrenergic receptors.
    J Mol Biol. 2010 Apr 16;397(5):1339-49 PMID: 20132827
  32. Measurement of the millisecond activation switch of G protein-coupled receptors in living cells.
    Nat Biotechnol. 2003 Jul;21(7):807-12 PMID: 12808462
  33. Activation of G protein-coupled receptors: beyond two-state models and tertiary conformational changes.
    Annu Rev Pharmacol Toxicol. 2008;48:107-41 PMID: 17848137
  34. Putative active states of a prototypic g-protein-coupled receptor from biased molecular dynamics.
    Biophys J. 2010 May 19;98(10):2347-55 PMID: 20483344
  35. Mechanism of G-protein activation by rhodopsin.
    Photochem Photobiol. 2007 Jan-Feb;83(1):70-5 PMID: 16800722
  36. Agonist-bound adenosine A2A receptor structures reveal common features of GPCR activation.
    Nature. 2011 May 18;474(7352):521-5 PMID: 21593763
  37. Synergistic contributions of the functional groups of epinephrine to its affinity and efficacy at the beta2 adrenergic receptor.
    Mol Pharmacol. 2004 May;65(5):1181-90 PMID: 15102946
  38. The evasive nature of drug efficacy: implications for drug discovery.
    Trends Pharmacol Sci. 2007 Aug;28(8):423-30 PMID: 17659355
Article Info
Journal
Proceedings of the National Academy of Sciences of the United States of America
Abbr.
Proc Natl Acad Sci U S A
ISSN
1091-6490
Published
2011-11-15
Epub
2011-00-26
Pages
18684-9
Language
English
Region
United States
NLM ID
7505876
PMCID
PMC3219117
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com