Home LiteratureArticle Details
PMID: 2102858 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Codon recognition mechanisms in plant chloroplasts.

Plant molecular biology ·Vol. 14 ·No. 5 ·1990-05-00 ·Pages 805-14

Pfitzinger H, Weil JH, Pillay DT, Guillemaut P

Abstract

In chloroplasts, all 61 sense codons are found in chloroplast (cp) DNA sequences coding for proteins. However among the sequenced cp tRNAs or tRNA genes, tRNAs with anticodons complementary to codons CUU/C (Leu), CCU/C (Pro), GCU/C (Ala) and CGC/A/G (Arg) [or CGC/A (Arg) in Marchantia] have not been found. In this paper we show that cp tRNA(Ala)(U*GC) cp tRNA(Pro)(U*GG) and cp tRNA(Arg)(ICG) are able to decode the corresponding four-codon family. In the case of leucine codons CUU/C, we show that 'U:U and U:C wobble' mechanisms can operate to allow the reading of these codons by cp tRNA(Leu)(UAm7G).

MeSH Terms
Amino Acid Sequence Anticodon/genetics Base Sequence Chloroplasts/metabolism Codon/genetics Molecular Sequence Data Plants/genetics Protein Biosynthesis RNA, Transfer, Amino Acid-Specific/genetics
Chemicals
Anticodon Codon RNA, Transfer, Amino Acid-Specific
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Pfitzinger H
Institut de Biologie Moléculaire des Plantes, Université Louis Pasteur, Strasbourg, France.
Weil J H
Pillay D T
Guillemaut P
References (28)
28 references, click to expand
  1. Preparation of a tRNA-dependent wheat germ protein-synthesizing system.
    Plant Mol Biol. 1989 Mar;12(3):301-6 PMID: 24272865
  2. Columns for rapid chromatographic separation of small amounts of tracer-labeled transfer ribonucleic acids.
    Anal Biochem. 1971 Dec;44(2):486-95 PMID: 4943341
  3. Aberrations of the classic codon reading scheme during protein synthesis in vitro.
    J Biol Chem. 1980 May 25;255(10):4583-8 PMID: 6989813
  4. Nucleotide sequence of a spinach chloroplast proline tRNA.
    Nucleic Acids Res. 1982 Apr 24;10(8):2755-8 PMID: 7079185
  5. Translational control of globin synthesis by haemin in Xenopus oocytes.
    Nat New Biol. 1973 Nov 28;246(152):99-102 PMID: 4518941
  6. Preferential codon usage in prokaryotic genes: the optimal codon-anticodon interaction energy and the selective codon usage in efficiently expressed genes.
    Gene. 1982 Jun;18(3):199-209 PMID: 6751939
  7. Nucleotide sequences of three soybean chloroplast tRNAsLeu and re-examination of bean chloroplast tRNA2Leu sequence.
    Nucleic Acids Res. 1984 Mar 26;12(6):2997-3001 PMID: 6571703
  8. Primary structure of three leucine transfer RNAs from bean chloroplast.
    Biochem Biophys Res Commun. 1980 Jan 15;92(1):102-8 PMID: 7356445
  9. Adjustment of the tRNA population to the codon usage in chloroplasts.
    Nucleic Acids Res. 1987 Feb 25;15(4):1377-86 PMID: 3822833
  10. Size, conformation and purity of chloroplast DNA of some higher plants.
    Biochim Biophys Acta. 1975 Jan 20;378(2):305-17 PMID: 1092350
  11. Hybridization of bean, spinach, maize and Euglena chloroplast transfer RNAs with homologous and heterologous chloroplast DNAs. An approach to the study of homology between chloroplast tRNAs from various species.
    Biochim Biophys Acta. 1980 Aug 26;609(1):31-9 PMID: 7407185
  12. Molecular biology of plant mitochondria.
    Cell. 1989 Jan 27;56(2):171-9 PMID: 2643472
  13. Nucleotide sequence of a spinach chloroplast valine tRNA.
    Nucleic Acids Res. 1981 Jun 11;9(11):2543-7 PMID: 6456449
  14. The primary structure of rabbit beta-globin mRNA as determined from cloned DNA.
    Cell. 1977 Apr;10(4):571-85 PMID: 558827
  15. Codon reading patterns in Saccharomyces cerevisiae mitochondria based on sequences of mitochondrial tRNAs.
    FEBS Lett. 1986 Jan 1;194(1):131-8 PMID: 2416594
  16. The use of thin acrylamide gels for DNA sequencing.
    FEBS Lett. 1978 Mar 1;87(1):107-10 PMID: 631324
  17. Transfer RNAs and tRNA genes of Vicia faba chloroplasts.
    Curr Genet. 1984 Jul;8(5):379-85 PMID: 24177818
  18. Structures of tobacco chloroplast genes for tRNA(Ile) (CAU), tRNA (Leu) (CAA), tRNA (Cys) (GCA), tRNA (Ser) (UGA) and tRNA (Thr) (GGU): a compilation of tRNA genes from tobacco chloroplasts.
    Plant Mol Biol. 1986 Sep;7(5):385-92 PMID: 24302408
  19. Endosymbiotic origin and codon bias of the nuclear gene for chloroplast glyceraldehyde-3-phosphate dehydrogenase from maize.
    J Mol Evol. 1987;26(4):320-8 PMID: 3131533
  20. The complete nucleotide sequence of the tobacco chloroplast genome: its gene organization and expression.
    EMBO J. 1986 Sep;5(9):2043-2049 PMID: 16453699
  21. Compilation of tRNA sequences and sequences of tRNA genes.
    Nucleic Acids Res. 1989;17 Suppl:r1-172 PMID: 2470031
  22. Codon--anticodon pairing: the wobble hypothesis.
    J Mol Biol. 1966 Aug;19(2):548-55 PMID: 5969078
  23. Yeast tRNALeu (anticodon U--A--G) translates all six leucine codons in extracts from interferon treated cells.
    FEBS Lett. 1977 Oct 1;82(1):71-6 PMID: 334566
  24. On the physical basis for ambiguity in genetic coding interactions.
    Proc Natl Acad Sci U S A. 1978 Feb;75(2):610-4 PMID: 273223
  25. Mapping of transfer RNA genes on tobacco chloroplast DNA.
    Plant Mol Biol. 1984 Jan;3(1):29-36 PMID: 24310257
  26. The primary sequence of rabbit alpha-globin mRNA.
    Cell. 1978 Sep;15(1):43-54 PMID: 699050
  27. Import of several tRNAs from the cytoplasm into the mitochondria in bean Phaseolus vulgaris.
    Nucleic Acids Res. 1988 Jun 10;16(11):4777-88 PMID: 3387208
  28. Different pattern of codon recognition by mammalian mitochondrial tRNAs.
    Proc Natl Acad Sci U S A. 1980 Jun;77(6):3164-6 PMID: 6932013
Article Info
Journal
Plant molecular biology
Abbr.
Plant Mol Biol
ISSN
0167-4412
Published
1990-05-00
Pages
805-14
Language
English
Region
Netherlands
NLM ID
9106343
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com