Abstract
In chloroplasts, all 61 sense codons are found in chloroplast (cp) DNA sequences coding for proteins. However among the sequenced cp tRNAs or tRNA genes, tRNAs with anticodons complementary to codons CUU/C (Leu), CCU/C (Pro), GCU/C (Ala) and CGC/A/G (Arg) [or CGC/A (Arg) in Marchantia] have not been found. In this paper we show that cp tRNA(Ala)(U*GC) cp tRNA(Pro)(U*GG) and cp tRNA(Arg)(ICG) are able to decode the corresponding four-codon family. In the case of leucine codons CUU/C, we show that 'U:U and U:C wobble' mechanisms can operate to allow the reading of these codons by cp tRNA(Leu)(UAm7G).
MeSH Terms
Amino Acid Sequence
Anticodon/genetics
Base Sequence
Chloroplasts/metabolism
Codon/genetics
Molecular Sequence Data
Plants/genetics
Protein Biosynthesis
RNA, Transfer, Amino Acid-Specific/genetics
Chemicals
Anticodon
Codon
RNA, Transfer, Amino Acid-Specific
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Pfitzinger H
Institut de Biologie Moléculaire des Plantes, Université Louis Pasteur, Strasbourg, France.
Weil J H
Pillay D T
Guillemaut P
References (28)
28 references, click to expand
-
Preparation of a tRNA-dependent wheat germ protein-synthesizing system.
Plant Mol Biol. 1989 Mar;12(3):301-6
PMID: 24272865
-
Columns for rapid chromatographic separation of small amounts of tracer-labeled transfer ribonucleic acids.
Anal Biochem. 1971 Dec;44(2):486-95
PMID: 4943341
-
Aberrations of the classic codon reading scheme during protein synthesis in vitro.
J Biol Chem. 1980 May 25;255(10):4583-8
PMID: 6989813
-
Nucleotide sequence of a spinach chloroplast proline tRNA.
Nucleic Acids Res. 1982 Apr 24;10(8):2755-8
PMID: 7079185
-
Translational control of globin synthesis by haemin in Xenopus oocytes.
Nat New Biol. 1973 Nov 28;246(152):99-102
PMID: 4518941
-
Preferential codon usage in prokaryotic genes: the optimal codon-anticodon interaction energy and the selective codon usage in efficiently expressed genes.
Gene. 1982 Jun;18(3):199-209
PMID: 6751939
-
Nucleotide sequences of three soybean chloroplast tRNAsLeu and re-examination of bean chloroplast tRNA2Leu sequence.
Nucleic Acids Res. 1984 Mar 26;12(6):2997-3001
PMID: 6571703
-
Primary structure of three leucine transfer RNAs from bean chloroplast.
Biochem Biophys Res Commun. 1980 Jan 15;92(1):102-8
PMID: 7356445
-
Adjustment of the tRNA population to the codon usage in chloroplasts.
Nucleic Acids Res. 1987 Feb 25;15(4):1377-86
PMID: 3822833
-
Size, conformation and purity of chloroplast DNA of some higher plants.
Biochim Biophys Acta. 1975 Jan 20;378(2):305-17
PMID: 1092350
-
Hybridization of bean, spinach, maize and Euglena chloroplast transfer RNAs with homologous and heterologous chloroplast DNAs. An approach to the study of homology between chloroplast tRNAs from various species.
Biochim Biophys Acta. 1980 Aug 26;609(1):31-9
PMID: 7407185
-
Molecular biology of plant mitochondria.
Cell. 1989 Jan 27;56(2):171-9
PMID: 2643472
-
Nucleotide sequence of a spinach chloroplast valine tRNA.
Nucleic Acids Res. 1981 Jun 11;9(11):2543-7
PMID: 6456449
-
The primary structure of rabbit beta-globin mRNA as determined from cloned DNA.
Cell. 1977 Apr;10(4):571-85
PMID: 558827
-
Codon reading patterns in Saccharomyces cerevisiae mitochondria based on sequences of mitochondrial tRNAs.
FEBS Lett. 1986 Jan 1;194(1):131-8
PMID: 2416594
-
The use of thin acrylamide gels for DNA sequencing.
FEBS Lett. 1978 Mar 1;87(1):107-10
PMID: 631324
-
Transfer RNAs and tRNA genes of Vicia faba chloroplasts.
Curr Genet. 1984 Jul;8(5):379-85
PMID: 24177818
-
Structures of tobacco chloroplast genes for tRNA(Ile) (CAU), tRNA (Leu) (CAA), tRNA (Cys) (GCA), tRNA (Ser) (UGA) and tRNA (Thr) (GGU): a compilation of tRNA genes from tobacco chloroplasts.
Plant Mol Biol. 1986 Sep;7(5):385-92
PMID: 24302408
-
Endosymbiotic origin and codon bias of the nuclear gene for chloroplast glyceraldehyde-3-phosphate dehydrogenase from maize.
J Mol Evol. 1987;26(4):320-8
PMID: 3131533
-
The complete nucleotide sequence of the tobacco chloroplast genome: its gene organization and expression.
EMBO J. 1986 Sep;5(9):2043-2049
PMID: 16453699
-
Compilation of tRNA sequences and sequences of tRNA genes.
Nucleic Acids Res. 1989;17 Suppl:r1-172
PMID: 2470031
-
Codon--anticodon pairing: the wobble hypothesis.
J Mol Biol. 1966 Aug;19(2):548-55
PMID: 5969078
-
Yeast tRNALeu (anticodon U--A--G) translates all six leucine codons in extracts from interferon treated cells.
FEBS Lett. 1977 Oct 1;82(1):71-6
PMID: 334566
-
On the physical basis for ambiguity in genetic coding interactions.
Proc Natl Acad Sci U S A. 1978 Feb;75(2):610-4
PMID: 273223
-
Mapping of transfer RNA genes on tobacco chloroplast DNA.
Plant Mol Biol. 1984 Jan;3(1):29-36
PMID: 24310257
-
The primary sequence of rabbit alpha-globin mRNA.
Cell. 1978 Sep;15(1):43-54
PMID: 699050
-
Import of several tRNAs from the cytoplasm into the mitochondria in bean Phaseolus vulgaris.
Nucleic Acids Res. 1988 Jun 10;16(11):4777-88
PMID: 3387208
-
Different pattern of codon recognition by mammalian mitochondrial tRNAs.
Proc Natl Acad Sci U S A. 1980 Jun;77(6):3164-6
PMID: 6932013