Home LiteratureArticle Details
PMID: 20676081 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Review

Going deeper than microscopy: the optical imaging frontier in biology.

Nature methods ·Vol. 7 ·No. 8 ·2010-08-00 ·Pages 603-14

Ntziachristos V

Abstract

Optical microscopy has been a fundamental tool of biological discovery for more than three centuries, but its in vivo tissue imaging ability has been restricted by light scattering to superficial investigations, even when confocal or multiphoton methods are used. Recent advances in optical and optoacoustic (photoacoustic) imaging now allow imaging at depths and resolutions unprecedented for optical methods. These abilities are increasingly important to understand the dynamic interactions of cellular processes at different systems levels, a major challenge of postgenome biology. This Review discusses promising photonic methods that have the ability to visualize cellular and subcellular components in tissues across different penetration scales. The methods are classified into microscopic, mesoscopic and macroscopic approaches, according to the tissue depth at which they operate. Key characteristics associated with different imaging implementations are described and the potential of these technologies in biological applications is discussed.

MeSH Terms
Microscopy/instrumentation,methods,trends Microscopy, Confocal Microscopy, Fluorescence, Multiphoton Optics and Photonics Tomography/methods
Authors & Affiliations
1 authors, click to expand affiliations / ORCID
Ntziachristos Vasilis
Institute for Biological and Medical Imaging, Helmholtz Zentrum München und Technische Universität München, Munich, Germany. v.ntziachristos@tum.de
References (91)
91 references, click to expand
  1. Nonlinear magic: multiphoton microscopy in the biosciences.
    Nat Biotechnol. 2003 Nov;21(11):1369-77 PMID: 14595365
  2. Two-dimensional quantitative photoacoustic image reconstruction of absorption distributions in scattering media by use of a simple iterative method.
    Appl Opt. 2006 Mar 10;45(8):1866-75 PMID: 16572706
  3. Estimating chromophore distributions from multiwavelength photoacoustic images.
    J Opt Soc Am A Opt Image Sci Vis. 2009 Feb;26(2):443-55 PMID: 19183699
  4. The optical properties of lung as a function of respiration.
    Phys Med Biol. 1997 Nov;42(11):2263-72 PMID: 9394411
  5. Photoacoustic imaging of the microvasculature with a high-frequency ultrasound array transducer.
    J Biomed Opt. 2007 Jan-Feb;12(1):010501 PMID: 17343475
  6. Characterization of hemoglobin, water, and NIR scattering in breast tissue: analysis of intersubject variability and menstrual cycle changes.
    J Biomed Opt. 2004 May-Jun;9(3):541-52 PMID: 15189092
  7. Protein localization in living cells and tissues using FRET and FLIM.
    Differentiation. 2003 Dec;71(9-10):528-41 PMID: 14686950
  8. Intravital multiphoton microscopy of dynamic renal processes.
    Am J Physiol Renal Physiol. 2005 Jun;288(6):F1084-9 PMID: 15883167
  9. Functional photoacoustic microscopy for high-resolution and noninvasive in vivo imaging.
    Nat Biotechnol. 2006 Jul;24(7):848-51 PMID: 16823374
  10. Imaging breast adipose and fibroglandular tissue molecular signatures by using hybrid MRI-guided near-infrared spectral tomography.
    Proc Natl Acad Sci U S A. 2006 Jun 6;103(23):8828-33 PMID: 16731633
  11. Correlation between the light scattering and the mitochondrial content of normal tissues and transplantable rodent tumors.
    Anal Biochem. 1995 Mar 20;226(1):167-74 PMID: 7785769
  12. In vivo dark-field reflection-mode photoacoustic microscopy.
    Opt Lett. 2005 Mar 15;30(6):625-7 PMID: 15791997
  13. PET/CT: challenge for nuclear cardiology.
    J Nucl Med. 2005 Oct;46(10):1664-78 PMID: 16204717
  14. Mammalian expression of infrared fluorescent proteins engineered from a bacterial phytochrome.
    Science. 2009 May 8;324(5928):804-7 PMID: 19423828
  15. Analysis of binding reactions by fluorescence recovery after photobleaching.
    Biophys J. 2004 Jun;86(6):3473-95 PMID: 15189848
  16. Coherent anti-stokes Raman scattering microscopy: a biological review.
    Cytometry A. 2006 Aug 1;69(8):779-91 PMID: 16752420
  17. Second-harmonic imaging microscopy for visualizing biomolecular arrays in cells, tissues and organisms.
    Nat Biotechnol. 2003 Nov;21(11):1356-60 PMID: 14595363
  18. Synthesis and bioconjugation of gold nanoparticles as potential molecular probes for light-based imaging techniques.
    Int J Biomed Imaging. 2007;2007:29817 PMID: 18354723
  19. Time-resolved imaging of optical coefficients through murine chest cavities.
    J Biomed Opt. 2006 Nov-Dec;11(6):064017 PMID: 17212540
  20. Time resolved reflectance and transmittance for the non-invasive measurement of tissue optical properties.
    Appl Opt. 1989 Jun 15;28(12):2331-6 PMID: 20555520
  21. Ultramicroscopy reveals axonal transport impairments in cortical motor neurons at prion disease.
    Biophys J. 2009 Apr 22;96(8):3390-8 PMID: 19383482
  22. In vivo imaging of specialized bone marrow endothelial microdomains for tumour engraftment.
    Nature. 2005 Jun 16;435(7044):969-73 PMID: 15959517
  23. Pulsed near-infrared laser diode excitation system for biomedical photoacoustic imaging.
    Opt Lett. 2006 Dec 1;31(23):3462-4 PMID: 17099750
  24. Noninvasive, infrared monitoring of cerebral and myocardial oxygen sufficiency and circulatory parameters.
    Science. 1977 Dec 23;198(4323):1264-7 PMID: 929199
  25. Resolution improvement in emission optical projection tomography.
    Phys Med Biol. 2007 May 21;52(10):2775-90 PMID: 17473351
  26. Multiphoton microscopy and fluorescence lifetime imaging microscopy (FLIM) to monitor metastasis and the tumor microenvironment.
    Clin Exp Metastasis. 2009;26(4):357-70 PMID: 18766302
  27. Deep tissue two-photon microscopy.
    Nat Methods. 2005 Dec;2(12):932-40 PMID: 16299478
  28. Fluorescence molecular tomography resolves protease activity in vivo.
    Nat Med. 2002 Jul;8(7):757-60 PMID: 12091907
  29. Multispectral photoacoustic imaging of fluorochromes in small animals.
    Opt Lett. 2007 Oct 1;32(19):2891-3 PMID: 17909608
  30. In vivo endoscopic optical biopsy with optical coherence tomography.
    Science. 1997 Jun 27;276(5321):2037-9 PMID: 9197265
  31. Methods for imaging the structure and function of living tissues and cells: 2. Fluorescence lifetime imaging.
    J Pathol. 2000 Jul;191(3):229-34 PMID: 10878542
  32. Scattering of diffuse photon density waves by spherical inhomogeneities within turbid media: analytic solution and applications.
    Proc Natl Acad Sci U S A. 1994 May 24;91(11):4887-91 PMID: 8197151
  33. Spectral domain second-harmonic optical coherence tomography.
    Opt Lett. 2005 Sep 15;30(18):2391-3 PMID: 16196329
  34. Ultramicroscopy: three-dimensional visualization of neuronal networks in the whole mouse brain.
    Nat Methods. 2007 Apr;4(4):331-6 PMID: 17384643
  35. Fluctuations and stimulus-induced changes in blood flow observed in individual capillaries in layers 2 through 4 of rat neocortex.
    Proc Natl Acad Sci U S A. 1998 Dec 22;95(26):15741-6 PMID: 9861040
  36. Dissecting tumour pathophysiology using intravital microscopy.
    Nat Rev Cancer. 2002 Apr;2(4):266-76 PMID: 12001988
  37. Normalization of tumor vasculature: an emerging concept in antiangiogenic therapy.
    Science. 2005 Jan 7;307(5706):58-62 PMID: 15637262
  38. Theoretical basis of confocal microscopy.
    Methods Enzymol. 1999;307:3-20 PMID: 10506964
  39. Photoacoustic tomography of joints aided by an Etanercept-conjugated gold nanoparticle contrast agent-an ex vivo preliminary rat study.
    Nanotechnology. 2008 Mar 5;19(9):095101 PMID: 21817663
  40. Fluorescence diffuse optical tomography with functional and anatomical a priori information: feasibility study.
    Phys Med Biol. 2007 Sep 21;52(18):5569-85 PMID: 17804882
  41. Two-photon laser scanning fluorescence microscopy.
    Science. 1990 Apr 6;248(4951):73-6 PMID: 2321027
  42. Looking and listening to light: the evolution of whole-body photonic imaging.
    Nat Biotechnol. 2005 Mar;23(3):313-20 PMID: 15765087
  43. State-of-the-art retinal optical coherence tomography.
    Prog Retin Eye Res. 2008 Jan;27(1):45-88 PMID: 18036865
  44. Experimental three-dimensional fluorescence reconstruction of diffuse media by use of a normalized Born approximation.
    Opt Lett. 2001 Jun 15;26(12):893-5 PMID: 18040483
  45. Laser-based measurements in cell biology.
    Methods Cell Biol. 2007;82:81-109 PMID: 17586255
  46. Diffuse optical tomography with a priori anatomical information.
    Phys Med Biol. 2005 Jun 21;50(12):2837-58 PMID: 15930606
  47. Optical projection tomography as a tool for 3D microscopy and gene expression studies.
    Science. 2002 Apr 19;296(5567):541-5 PMID: 11964482
  48. Imaging in the era of molecular oncology.
    Nature. 2008 Apr 3;452(7187):580-9 PMID: 18385732
  49. Combined optical imaging and mammography of the healthy breast: optical contrast derived from breast structure and compression.
    IEEE Trans Med Imaging. 2009 Jan;28(1):30-42 PMID: 19116186
  50. In vivo magnetic enrichment and multiplex photoacoustic detection of circulating tumour cells.
    Nat Nanotechnol. 2009 Dec;4(12):855-60 PMID: 19915570
  51. Photothermal optical coherence tomography of epidermal growth factor receptor in live cells using immunotargeted gold nanospheres.
    Nano Lett. 2008 Oct;8(10):3461-7 PMID: 18767886
  52. Quantitative FRAP in analysis of molecular binding dynamics in vivo.
    Methods Cell Biol. 2008;85:329-51 PMID: 18155469
  53. Hybrid system for simultaneous fluorescence and x-ray computed tomography.
    IEEE Trans Med Imaging. 2010 Feb;29(2):465-73 PMID: 19906585
  54. Studying inner ear protein-protein interactions using FRET and FLIM.
    Brain Res. 2006 May 26;1091(1):122-31 PMID: 16626648
  55. Optical coherence tomography.
    Science. 1991 Nov 22;254(5035):1178-81 PMID: 1957169
  56. Measuring molecular order and orientation using coherent anti-stokes Raman scattering microscopy.
    Methods Mol Biol. 2007;400:45-61 PMID: 17951726
  57. Measuring diffusion and binding kinetics by contact area FRAP.
    Biophys J. 2008 Jul;95(2):920-30 PMID: 18390627
  58. In vitro whole-organ imaging: 4D quantification of growing mouse limb buds.
    Nat Methods. 2008 Jul;5(7):609-12 PMID: 18516047
  59. In vivo imaging of Drosophila melanogaster pupae with mesoscopic fluorescence tomography.
    Nat Methods. 2008 Jan;5(1):45-7 PMID: 18066071
  60. Photoacoustic determination of blood vessel diameter.
    Phys Med Biol. 2004 Oct 21;49(20):4745-56 PMID: 15566172
  61. High sensitivity of in vivo detection of gold nanorods using a laser optoacoustic imaging system.
    Nano Lett. 2007 Jul;7(7):1914-8 PMID: 17570730
  62. Quantum dots as multimodal photoacoustic and photothermal contrast agents.
    Nano Lett. 2008 Nov;8(11):3953-8 PMID: 18834183
  63. In vivo detection of amyloid-beta deposits by near-infrared imaging using an oxazine-derivative probe.
    Nat Biotechnol. 2005 May;23(5):577-83 PMID: 15834405
  64. Optical-resolution photoacoustic microscopy for in vivo imaging of single capillaries.
    Opt Lett. 2008 May 1;33(9):929-31 PMID: 18451942
  65. Coherent anti-Stokes Raman scattering microscopy.
    Appl Spectrosc. 2007 Sep;61(9):197-208 PMID: 17910784
  66. High-resolution three-dimensional imaging of islet-infiltrate interactions based on optical projection tomography assessments of the intact adult mouse pancreas.
    J Biomed Opt. 2008 Sep-Oct;13(5):054070 PMID: 19021448
  67. Multispectral optoacoustic tomography by means of normalized spectral ratio.
    Opt Lett. 2011 Nov 1;36(21):4176-8 PMID: 22048356
  68. Magnetic resonance-coupled fluorescence tomography scanner for molecular imaging of tissue.
    Rev Sci Instrum. 2008 Jun;79(6):064302 PMID: 18601421
  69. 3 dimensional modelling of early human brain development using optical projection tomography.
    BMC Neurosci. 2004 Aug 06;5:27 PMID: 15298700
  70. An extended vision for dynamic high-resolution intravital immune imaging.
    Semin Immunol. 2005 Dec;17(6):431-41 PMID: 16216522
  71. Optical sectioning deep inside live embryos by selective plane illumination microscopy.
    Science. 2004 Aug 13;305(5686):1007-9 PMID: 15310904
  72. Hybrid FMT-CT imaging of amyloid-beta plaques in a murine Alzheimer's disease model.
    Neuroimage. 2009 Feb 15;44(4):1304-11 PMID: 19041402
  73. Fast semi-analytical model-based acoustic inversion for quantitative optoacoustic tomography.
    IEEE Trans Med Imaging. 2010 Jun;29(6):1275-85 PMID: 20304725
  74. Noninvasive laser-induced photoacoustic tomography for structural and functional in vivo imaging of the brain.
    Nat Biotechnol. 2003 Jul;21(7):803-6 PMID: 12808463
  75. Photoacoustic imaging of lacZ gene expression in vivo.
    J Biomed Opt. 2007 Mar-Apr;12(2):020504 PMID: 17477703
  76. High-resolution three-dimensional imaging of large specimens with light sheet-based microscopy.
    Nat Methods. 2007 Apr;4(4):311-3 PMID: 17339847
  77. Carbon nanotubes as photoacoustic molecular imaging agents in living mice.
    Nat Nanotechnol. 2008 Sep;3(9):557-62 PMID: 18772918
  78. Concurrent MRI and diffuse optical tomography of breast after indocyanine green enhancement.
    Proc Natl Acad Sci U S A. 2000 Mar 14;97(6):2767-72 PMID: 10706610
  79. Confocal fluorescence microscope with dual-axis architecture and biaxial postobjective scanning.
    J Biomed Opt. 2004 Jul-Aug;9(4):735-42 PMID: 15250760
  80. Molecularly sensitive optical coherence tomography.
    Opt Lett. 2005 Mar 1;30(5):495-7 PMID: 15789714
  81. Thermoacoustic molecular imaging of small animals.
    Mol Imaging. 2003 Apr;2(2):113-23 PMID: 12964308
  82. Two-photon microscopy: shedding light on the chemistry of vision.
    Biochemistry. 2007 Aug 28;46(34):9674-84 PMID: 17676772
  83. Light microscopy techniques for live cell imaging.
    Science. 2003 Apr 4;300(5616):82-6 PMID: 12677057
  84. Remodeling of synaptic structure in sensory cortical areas in vivo.
    J Neurosci. 2006 Mar 15;26(11):3021-9 PMID: 16540580
  85. Simultaneous PET-MRI: a new approach for functional and morphological imaging.
    Nat Med. 2008 Apr;14(4):459-65 PMID: 18376410
  86. Shedding light onto live molecular targets.
    Nat Med. 2003 Jan;9(1):123-8 PMID: 12514725
  87. Fluorescence imaging techniques for studying Drosophila embryo development.
    Curr Protoc Cell Biol. 2008 Jun;Chapter 4:Unit 4.18 PMID: 18551421
  88. Detection of ultrawide-band ultrasound pulses in optoacoustic tomography.
    IEEE Trans Ultrason Ferroelectr Freq Control. 2003 Oct;50(10):1383-90 PMID: 14609079
  89. Building and breeding molecules to spy on cells and tumors.
    FEBS Lett. 2005 Feb 7;579(4):927-32 PMID: 15680976
  90. Fluorescence lifetime imaging microscopy: spatial resolution of biochemical processes in the cell.
    Trends Cell Biol. 1999 Feb;9(2):48-52 PMID: 10087617
  91. Even fluorescence excitation by multidirectional selective plane illumination microscopy (mSPIM).
    Opt Lett. 2007 Sep 1;32(17):2608-10 PMID: 17767321
Article Info
Journal
Nature methods
Abbr.
Nat Methods
ISSN
1548-7105
Published
2010-08-00
Epub
2010-00-30
Pages
603-14
Language
English
Region
United States
NLM ID
101215604
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com