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PMID: 20554778 Published · ppublish English Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't

Interaction of alphaVbeta3 and alphaVbeta6 integrins with human parechovirus 1.

Journal of virology ·Vol. 84 ·No. 17 ·2010-09-00 ·Pages 8509-19

Seitsonen J, Susi P, Heikkilä O, Sinkovits RS, Laurinmäki P, Hyypiä T, Butcher SJ

Abstract

Human parechovirus (HPEV) infections are very common in early childhood and can be severe in neonates. It has been shown that integrins are important for cellular infectivity of HPEV1 through experiments using peptide blocking assays and function-blocking antibodies to alpha(V) integrins. The interaction of HPEV1 with alpha(V) integrins is presumably mediated by a C-terminal RGD motif in the capsid protein VP1. We characterized the binding of integrins alpha(V)beta(3) and alpha(V)beta(6) to HPEV1 by biochemical and structural studies. We showed that although HPEV1 bound efficiently to immobilized integrins, alpha(V)beta(6) bound more efficiently than alpha(V)beta(3) to immobilized HPEV1. Moreover, soluble alpha(V)beta(6), but not alpha(V)beta(3), blocked HPEV1 cellular infectivity, indicating that it is a high-affinity receptor for HPEV1. We also showed that HPEV1 binding to integrins in vitro could be partially blocked by RGD peptides. Using electron cryo-microscopy and image reconstruction, we showed that HPEV1 has the typical T=1 (pseudo T=3) organization of a picornavirus. Complexes of HPEV1 and integrins indicated that both integrin footprints reside between the 5-fold and 3-fold symmetry axes. This result does not match the RGD position predicted from the coxsackievirus A9 X-ray structure but is consistent with the predicted location of this motif in the shorter C terminus found in HPEV1. This first structural characterization of a parechovirus indicates that the differences in receptor binding are due to the amino acid differences in the integrins rather than to significantly different viral footprints.

MeSH Terms
Amino Acid Sequence Antigens, Neoplasm/chemistry,genetics,metabolism Cell Line Humans Integrin alphaVbeta3/chemistry,genetics,metabolism Integrins/chemistry,genetics,metabolism Molecular Conformation Molecular Sequence Data Parechovirus/chemistry,genetics,metabolism Picornaviridae Infections/metabolism,virology Protein Binding Sequence Alignment Viral Proteins/chemistry,genetics,metabolism
Chemicals
Antigens, Neoplasm Integrin alphaVbeta3 Integrins Viral Proteins integrin alphavbeta6
Authors & Affiliations
7 authors, click to expand affiliations / ORCID
Seitsonen Jani
Department of Biosciences, Institute of Biotechnology, PO Box 65, Viikinkaari 1, FIN-00014 University of Helsinki, Finland.
Susi Petri
Heikkilä Outi
Sinkovits Robert S
Laurinmäki Pasi
Hyypiä Timo
Butcher Sarah J
References (89)
89 references, click to expand
  1. Role of the integrin alpha v beta 6 in cell attachment to fibronectin. Heterologous expression of intact and secreted forms of the receptor.
    J Biol Chem. 1994 Mar 4;269(9):6940-8 PMID: 8120056
  2. Structural studies of two rhinovirus serotypes complexed with fragments of their cellular receptor.
    EMBO J. 1999 Nov 15;18(22):6249-59 PMID: 10562537
  3. Adenovirus serotype 5 hexon mediates liver gene transfer.
    Cell. 2008 Feb 8;132(3):397-409 PMID: 18267072
  4. Interaction of poliovirus with its purified receptor and conformational alteration in the virion.
    J Virol. 1998 May;72(5):3578-86 PMID: 9557638
  5. Adding the third dimension to virus life cycles: three-dimensional reconstruction of icosahedral viruses from cryo-electron micrographs.
    Microbiol Mol Biol Rev. 1999 Dec;63(4):862-922, table of contents PMID: 10585969
  6. Isolation and identification of a novel human parechovirus.
    J Gen Virol. 2004 Feb;85(Pt 2):391-398 PMID: 14769896
  7. Mechanisms of receptor-mediated rhinovirus neutralization defined by two soluble forms of ICAM-1.
    J Virol. 1991 Nov;65(11):6015-23 PMID: 1681115
  8. Classification and three-dimensional reconstruction of unevenly distributed or symmetry mismatched features of icosahedral particles.
    J Struct Biol. 2005 Jun;150(3):332-9 PMID: 15890281
  9. Template-based modeling and free modeling by I-TASSER in CASP7.
    Proteins. 2007;69 Suppl 8:108-17 PMID: 17894355
  10. The structure and function of a foot-and-mouth disease virus-oligosaccharide receptor complex.
    EMBO J. 1999 Feb 1;18(3):543-54 PMID: 9927414
  11. Major and minor receptor group human rhinoviruses penetrate from endosomes by different mechanisms.
    J Virol. 1998 Feb;72(2):1354-64 PMID: 9445036
  12. Conformational changes, plasma membrane penetration, and infection by human rhinovirus type 2: role of receptors and low pH.
    J Virol. 2003 May;77(9):5370-7 PMID: 12692239
  13. Clustal W and Clustal X version 2.0.
    Bioinformatics. 2007 Nov 1;23(21):2947-8 PMID: 17846036
  14. Three-dimensional structure of Theiler virus.
    Proc Natl Acad Sci U S A. 1992 Mar 15;89(6):2061-5 PMID: 1549565
  15. Uncoating of human rhinovirus serotype 2 from late endosomes.
    J Virol. 1994 Jun;68(6):3713-23 PMID: 8189509
  16. Crystal structure of human rhinovirus serotype 1A (HRV1A).
    J Mol Biol. 1989 Nov 5;210(1):91-111 PMID: 2555523
  17. EMAN: semiautomated software for high-resolution single-particle reconstructions.
    J Struct Biol. 1999 Dec 1;128(1):82-97 PMID: 10600563
  18. Cell-induced conformational change in poliovirus: externalization of the amino terminus of VP1 is responsible for liposome binding.
    J Virol. 1990 May;64(5):1934-45 PMID: 2157861
  19. UCSF Chimera--a visualization system for exploratory research and analysis.
    J Comput Chem. 2004 Oct;25(13):1605-12 PMID: 15264254
  20. Integrin alpha v beta 6 is an RGD-dependent receptor for coxsackievirus A9.
    J Virol. 2004 Jul;78(13):6967-73 PMID: 15194773
  21. Structure of a human common cold virus and functional relationship to other picornaviruses.
    Nature. 1985 Sep 12-18;317(6033):145-53 PMID: 2993920
  22. Structure determination of echovirus 1.
    Acta Crystallogr D Biol Crystallogr. 1998 Nov 1;54(Pt 6 Pt 2):1261-72 PMID: 10089503
  23. Molecular cloning of poliovirus cDNA and determination of the complete nucleotide sequence of the viral genome.
    Proc Natl Acad Sci U S A. 1981 Aug;78(8):4887-91 PMID: 6272282
  24. Interaction of the poliovirus receptor with poliovirus.
    Proc Natl Acad Sci U S A. 2000 Jan 4;97(1):79-84 PMID: 10618374
  25. The crystal structure of coxsackievirus A9: new insights into the uncoating mechanisms of enteroviruses.
    Structure. 1999 Dec 15;7(12):1527-38 PMID: 10647183
  26. Human parechovirus 1 utilizes integrins alphavbeta3 and alphavbeta1 as receptors.
    J Virol. 2000 Jul;74(13):5856-62 PMID: 10846065
  27. Tale of two spikes in bacteriophage PRD1.
    Proc Natl Acad Sci U S A. 2007 Apr 17;104(16):6666-71 PMID: 17416681
  28. Integrin alphaVbeta6 is a high-affinity receptor for coxsackievirus A9.
    J Gen Virol. 2009 Jan;90(Pt 1):197-204 PMID: 19088289
  29. An antibody to the putative aphid recognition site on cucumber mosaic virus recognizes pentons but not hexons.
    J Virol. 2002 Dec;76(23):12250-8 PMID: 12414964
  30. Isolation and characterization of novel human parechovirus from clinical samples.
    Emerg Infect Dis. 2007 Jun;13(6):889-95 PMID: 17553229
  31. Structural and serological evidence for a novel mechanism of antigenic variation in foot-and-mouth disease virus.
    Nature. 1990 Oct 11;347(6293):569-72 PMID: 1699132
  32. I-TASSER server for protein 3D structure prediction.
    BMC Bioinformatics. 2008 Jan 23;9:40 PMID: 18215316
  33. The nucleotide sequence of coxsackievirus A9; implications for receptor binding and enterovirus classification.
    J Gen Virol. 1989 Dec;70 ( Pt 12):3269-80 PMID: 2558158
  34. A distinct picornavirus group identified by sequence analysis.
    Proc Natl Acad Sci U S A. 1992 Sep 15;89(18):8847-51 PMID: 1528901
  35. Complete genomic sequencing shows that polioviruses and members of human enterovirus species C are closely related in the noncapsid coding region.
    J Virol. 2003 Aug;77(16):8973-84 PMID: 12885914
  36. The complete nucleotide sequence of a common cold virus: human rhinovirus 14.
    Nucleic Acids Res. 1984 Oct 25;12(20):7859-75 PMID: 6093056
  37. Properties of ECHO types 22, 23 and 24 viruses.
    Arch Gesamte Virusforsch. 1961;11:224-47 PMID: 13785166
  38. Genetic variability of encephalomyocarditis virus (EMCV) isolates.
    Vet Microbiol. 2006 Mar 10;113(1-2):1-12 PMID: 16406410
  39. Cell-surface interactions of echovirus 22.
    J Biol Chem. 1997 Aug 22;272(34):21176-80 PMID: 9261123
  40. wEMBOSS: a web interface for EMBOSS.
    Bioinformatics. 2005 Feb 15;21(4):540-1 PMID: 15388516
  41. Molecular and biological characteristics of echovirus 22, a representative of a new picornavirus group.
    J Virol. 1994 Dec;68(12):8232-8 PMID: 7966616
  42. Exploring the extremes of sequence/structure space with ensemble fold recognition in the program Phyre.
    Proteins. 2008 Feb 15;70(3):611-25 PMID: 17876813
  43. Complete nucleotide sequence of infectious Coxsackievirus B3 cDNA: two initial 5' uridine residues are regained during plus-strand RNA synthesis.
    J Virol. 1990 Apr;64(4):1573-83 PMID: 2157045
  44. Human parechoviruses: biology, epidemiology and clinical significance.
    J Clin Virol. 2009 May;45(1):1-9 PMID: 19372062
  45. Fourier shell correlation threshold criteria.
    J Struct Biol. 2005 Sep;151(3):250-62 PMID: 16125414
  46. Parechoviruses.
    J Virol. 1999 Jul;73(7):5249-54 PMID: 10364270
  47. Epidemiological features of type 22 echovirus infection.
    Scand J Infect Dis. 1993;25(3):275-81 PMID: 8362222
  48. Local average intensity-based method for identifying spherical particles in electron micrographs.
    J Struct Biol. 2000 Aug;131(2):126-34 PMID: 11042083
  49. Analysis of a new human parechovirus allows the definition of parechovirus types and the identification of RNA structural domains.
    J Virol. 2007 Jan;81(2):1013-21 PMID: 17005640
  50. Reovirus polymerase lambda 3 localized by cryo-electron microscopy of virions at a resolution of 7.6 A.
    Nat Struct Biol. 2003 Dec;10(12):1011-8 PMID: 14608373
  51. The structure of echovirus type 12 bound to a two-domain fragment of its cellular attachment protein decay-accelerating factor (CD 55).
    J Biol Chem. 2004 Feb 27;279(9):8325-32 PMID: 14634014
  52. Many rhinovirus serotypes share the same cellular receptor.
    J Virol. 1984 Aug;51(2):340-5 PMID: 6086949
  53. Three-dimensional structure of poliovirus at 2.9 A resolution.
    Science. 1985 Sep 27;229(4720):1358-65 PMID: 2994218
  54. Automated electron microscope tomography using robust prediction of specimen movements.
    J Struct Biol. 2005 Oct;152(1):36-51 PMID: 16182563
  55. Molecular characterization of a Canadian human parechovirus (HPeV)-3 isolate and its relationship to other HPeVs.
    J Med Virol. 2005 Dec;77(4):566-70 PMID: 16254961
  56. Enteroviruses in human disease.
    Prog Med Virol. 1978;24:114-57 PMID: 360295
  57. Crystal structure of the extracellular segment of integrin alpha Vbeta3 in complex with an Arg-Gly-Asp ligand.
    Science. 2002 Apr 5;296(5565):151-5 PMID: 11884718
  58. Asymmetric binding of transferrin receptor to parvovirus capsids.
    Proc Natl Acad Sci U S A. 2007 Apr 17;104(16):6585-9 PMID: 17420467
  59. Fourth human parechovirus serotype.
    Emerg Infect Dis. 2006 Oct;12(10):1572-5 PMID: 17176575
  60. Molecular cloning and sequence determination of the complete genome of the virulent echovirus 9 strain barty.
    Virus Genes. 1996;12(2):149-54 PMID: 8879131
  61. Complete sequence of echovirus 23 and its relationship to echovirus 22 and other human enteroviruses.
    Virus Res. 1998 Aug;56(2):217-23 PMID: 9783471
  62. The crystal structure of coxsackievirus A21 and its interaction with ICAM-1.
    Structure. 2005 Jul;13(7):1019-33 PMID: 16004874
  63. Cryo-electron microscopy structure of an adenovirus-integrin complex indicates conformational changes in both penton base and integrin.
    J Virol. 2009 Nov;83(22):11491-501 PMID: 19726496
  64. Ab initio random model method facilitates 3D reconstruction of icosahedral particles.
    J Struct Biol. 2007 Jan;157(1):211-25 PMID: 16979906
  65. AUTO3DEM--an automated and high throughput program for image reconstruction of icosahedral particles.
    J Struct Biol. 2007 Jan;157(1):73-82 PMID: 17029842
  66. Diagnosis and epidemiology of echovirus 22 infections.
    Clin Infect Dis. 1998 Jul;27(1):129-36 PMID: 9675466
  67. Structure determination of coxsackievirus B3 to 3.5 A resolution.
    Acta Crystallogr D Biol Crystallogr. 1995 Nov 1;51(Pt 6):871-87 PMID: 15299757
  68. Structure of a hexameric RNA packaging motor in a viral polymerase complex.
    J Struct Biol. 2007 May;158(2):156-64 PMID: 17095250
  69. Novel human parechovirus from Brazil.
    Emerg Infect Dis. 2009 Feb;15(2):310-3 PMID: 19193281
  70. Accurate determination of local defocus and specimen tilt in electron microscopy.
    J Struct Biol. 2003 Jun;142(3):334-47 PMID: 12781660
  71. Genomic characterization of novel human parechovirus type.
    Emerg Infect Dis. 2009 Feb;15(2):288-91 PMID: 19193275
  72. Human parechovirus 3 and neonatal infections.
    Emerg Infect Dis. 2005 Jan;11(1):103-5 PMID: 15705330
  73. Interaction of coxsackievirus B3 with the full length coxsackievirus-adenovirus receptor.
    Nat Struct Biol. 2001 Oct;8(10):874-8 PMID: 11573093
  74. Molecular analysis of three Ljungan virus isolates reveals a new, close-to-root lineage of the Picornaviridae with a cluster of two unrelated 2A proteins.
    J Virol. 2002 Sep;76(17):8920-30 PMID: 12163611
  75. Nucleotide sequence and corresponding amino acid sequence of the gene for the major antigen of foot and mouth disease virus.
    Nucleic Acids Res. 1981 Apr 24;9(8):1919-31 PMID: 6264400
  76. ESPript/ENDscript: Extracting and rendering sequence and 3D information from atomic structures of proteins.
    Nucleic Acids Res. 2003 Jul 1;31(13):3320-3 PMID: 12824317
  77. Entry of human parechovirus 1.
    J Virol. 2001 Feb;75(4):1958-67 PMID: 11160695
  78. The structure of the poliovirus 135S cell entry intermediate at 10-angstrom resolution reveals the location of an externalized polypeptide that binds to membranes.
    J Virol. 2005 Jun;79(12):7745-55 PMID: 15919927
  79. RGD-dependent entry of coxsackievirus A9 into host cells and its bypass after cleavage of VP1 protein by intestinal proteases.
    J Virol. 1991 Sep;65(9):4735-40 PMID: 1870199
  80. Structure and host-cell interaction of SH1, a membrane-containing, halophilic euryarchaeal virus.
    Proc Natl Acad Sci U S A. 2008 Jun 10;105(23):8008-13 PMID: 18515426
  81. Computer visualization of three-dimensional image data using IMOD.
    J Struct Biol. 1996 Jan-Feb;116(1):71-6 PMID: 8742726
  82. Determination of the structure of a decay accelerating factor-binding clinical isolate of echovirus 11 allows mapping of mutants with altered receptor requirements for infection.
    J Virol. 2002 Aug;76(15):7694-704 PMID: 12097583
  83. The three-dimensional structure of foot-and-mouth disease virus at 2.9 A resolution.
    Nature. 1989 Feb 23;337(6209):709-16 PMID: 2537470
  84. Human parechovirus 1 infections in young children--no association with type 1 diabetes.
    J Med Virol. 2007 Apr;79(4):457-62 PMID: 17311340
  85. Molecular analysis of human parechovirus type 2 (formerly echovirus 23).
    J Gen Virol. 1998 Nov;79 ( Pt 11):2641-50 PMID: 9820139
  86. Arginine-glycine-aspartic acid motif is critical for human parechovirus 1 entry.
    J Virol. 2001 Oct;75(20):10000-4 PMID: 11559835
  87. Implications for viral uncoating from the structure of bovine enterovirus.
    Nat Struct Biol. 1995 Mar;2(3):224-31 PMID: 7773791
  88. Ab initio modeling of small proteins by iterative TASSER simulations.
    BMC Biol. 2007 May 08;5:17 PMID: 17488521
  89. Dual-axis tomography: an approach with alignment methods that preserve resolution.
    J Struct Biol. 1997 Dec;120(3):343-52 PMID: 9441937
Article Info
Journal
Journal of virology
Abbr.
J Virol
ISSN
1098-5514
Published
2010-09-00
Epub
2010-00-16
Pages
8509-19
Language
English
Region
United States
NLM ID
0113724
PMCID
PMC2919010
Subset
IM
Grants
NIAID NIH HHS · R01 AI-079095 · United States
NIGMS NIH HHS · R37 GM033050 · United States
NIGMS NIH HHS · R37 GM-033050 · United States
NIAID NIH HHS · R56 AI079095 · United States
NIAID NIH HHS · P01 AI045976 · United States
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