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PMID: 20044482 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

A 3.5-nm structure of rat TRPV4 cation channel revealed by Zernike phase-contrast cryoelectron microscopy.

The Journal of biological chemistry ·Vol. 285 ·No. 15 ·2010-04-09 ·Pages 11210-8

Shigematsu H, Sokabe T, Danev R, Tominaga M, Nagayama K

Abstract

The transient receptor potential vanilloid 4 (TRPV4) is a non-selective cation channel responsive to various stimuli including cell swelling, warm temperatures (27-35 degrees C), and chemical compounds such as phorbol ester derivatives. Here we report the three-dimensional structure of full-length rat TRPV4 purified from baculovirus-infected Sf9 cells. Hexahistidine-tagged rat TRPV4 (His-rTRPV4) was solubilized with detergent and purified through affinity chromatography and size-exclusion chromatography. Chemical cross-linking analysis revealed that detergent-solubilized His-rTRPV4 was a tetramer. The 3.5-nm structure of rat TRPV4 was determined by cryoelectron microscopy using single-particle reconstruction from Zernike phase-contrast images. The overall structure comprises two distinct regions; a larger dense component, likely corresponding to the cytoplasmic N- and C-terminal regions, and a smaller component corresponding to the transmembrane region.

MeSH Terms
Animals Calcium/chemistry Cell Line Chromatography, Affinity/methods Cross-Linking Reagents/chemistry Cryoelectron Microscopy/methods Detergents/pharmacology Image Processing, Computer-Assisted Insecta Microscopy, Electron, Transmission/methods Microscopy, Phase-Contrast/methods Molecular Conformation Protein Conformation Rats TRPV Cation Channels/chemistry
Chemicals
Cross-Linking Reagents Detergents TRPV Cation Channels Trpv4 protein, rat Calcium
Authors & Affiliations
5 authors, click to expand affiliations / ORCID
Shigematsu Hideki
Division of Nano-Structure Physiology, Okazaki Institute for Integrative Bioscience, Higashiyama, Myodaiji, Okazaki 444-8787 Japan.
Sokabe Takaaki
Danev Radostin
Tominaga Makoto
Nagayama Kuniaki
References (53)
53 references, click to expand
  1. Crystal structure of the atypical protein kinase domain of a TRP channel with phosphotransferase activity.
    Mol Cell. 2001 May;7(5):1047-57 PMID: 11389851
  2. OTRPC4, a nonselective cation channel that confers sensitivity to extracellular osmolarity.
    Nat Cell Biol. 2000 Oct;2(10):695-702 PMID: 11025659
  3. OS-9 regulates the transit and polyubiquitination of TRPV4 in the endoplasmic reticulum.
    J Biol Chem. 2007 Dec 14;282(50):36561-70 PMID: 17932042
  4. Swelling-activated Ca2+ entry via TRPV4 channel is defective in cystic fibrosis airway epithelia.
    J Biol Chem. 2004 Dec 24;279(52):54062-8 PMID: 15489228
  5. Cell biology. Channels as enzymes.
    Nature. 2001 May 31;411(6837):542-3 PMID: 11385555
  6. Anandamide and arachidonic acid use epoxyeicosatrienoic acids to activate TRPV4 channels.
    Nature. 2003 Jul 24;424(6947):434-8 PMID: 12879072
  7. Heat-evoked activation of the ion channel, TRPV4.
    J Neurosci. 2002 Aug 1;22(15):6408-14 PMID: 12151520
  8. Crystal structure of a mammalian voltage-dependent Shaker family K+ channel.
    Science. 2005 Aug 5;309(5736):897-903 PMID: 16002581
  9. EMAN: semiautomated software for high-resolution single-particle reconstructions.
    J Struct Biol. 1999 Dec 1;128(1):82-97 PMID: 10600563
  10. UCSF Chimera--a visualization system for exploratory research and analysis.
    J Comput Chem. 2004 Oct;25(13):1605-12 PMID: 15264254
  11. Role of caveolar compartmentation in endothelium-derived hyperpolarizing factor-mediated relaxation: Ca2+ signals and gap junction function are regulated by caveolin in endothelial cells.
    Circulation. 2008 Feb 26;117(8):1065-74 PMID: 18268148
  12. Identification of molecular determinants of channel gating in the transient receptor potential box of vanilloid receptor I.
    FASEB J. 2008 Sep;22(9):3298-309 PMID: 18559878
  13. Hanging gondola structure of the T1 domain in a voltage-gated K(+) channel.
    Biochemistry. 2000 Aug 29;39(34):10347-52 PMID: 10956024
  14. Analysis of the native quaternary structure of vanilloid receptor 1.
    J Biol Chem. 2001 Jul 27;276(30):28613-9 PMID: 11358970
  15. Structure of TRPV1 channel revealed by electron cryomicroscopy.
    Proc Natl Acad Sci U S A. 2008 May 27;105(21):7451-5 PMID: 18490661
  16. The non-selective cation-permeable channel TRPC3 is a tetrahedron with a cap on the large cytoplasmic end.
    Biochem Biophys Res Commun. 2005 Aug 5;333(3):768-77 PMID: 15964551
  17. PACSINs bind to the TRPV4 cation channel. PACSIN 3 modulates the subcellular localization of TRPV4.
    J Biol Chem. 2006 Jul 7;281(27):18753-62 PMID: 16627472
  18. Molecular modeling of the full-length human TRPV1 channel in closed and desensitized states.
    J Membr Biol. 2008 Jun;223(3):161-72 PMID: 18791833
  19. Homo- and heteromeric assembly of TRPV channel subunits.
    J Cell Sci. 2005 Mar 1;118(Pt 5):917-28 PMID: 15713749
  20. Crystal structure of the human TRPV2 channel ankyrin repeat domain.
    Protein Sci. 2006 Sep;15(9):2201-6 PMID: 16882997
  21. Trp12, a novel Trp related protein from kidney.
    FEBS Lett. 2000 Nov 24;485(2-3):127-34 PMID: 11094154
  22. Vanilloid receptor-related osmotically activated channel (VR-OAC), a candidate vertebrate osmoreceptor.
    Cell. 2000 Oct 27;103(3):525-35 PMID: 11081638
  23. Three-dimensional structure of I(to); Kv4.2-KChIP2 ion channels by electron microscopy at 21 Angstrom resolution.
    Neuron. 2004 Feb 19;41(4):513-9 PMID: 14980201
  24. Transfer doublet and an elaborated phase plate holder for 120 kV electron-phase microscope.
    J Electron Microsc (Tokyo). 2005 Aug;54(4):317-24 PMID: 16123062
  25. Microtubule-associated [corrected] protein 7 increases the membrane expression of transient receptor potential vanilloid 4 (TRPV4).
    J Biol Chem. 2003 Dec 19;278(51):51448-53 PMID: 14517216
  26. Single particle analysis based on Zernike phase contrast transmission electron microscopy.
    J Struct Biol. 2008 Feb;161(2):211-8 PMID: 18082423
  27. The role of the N terminus and transmembrane domain of TRPM8 in channel localization and tetramerization.
    J Biol Chem. 2007 Dec 14;282(50):36474-80 PMID: 17908685
  28. IP3 receptor binds to and sensitizes TRPV4 channel to osmotic stimuli via a calmodulin-binding site.
    J Biol Chem. 2008 Nov 14;283(46):31284-8 PMID: 18826956
  29. Functional coupling of TRPV4 cationic channel and large conductance, calcium-dependent potassium channel in human bronchial epithelial cell lines.
    Pflugers Arch. 2008 Oct;457(1):149-59 PMID: 18458941
  30. IP3 sensitizes TRPV4 channel to the mechano- and osmotransducing messenger 5'-6'-epoxyeicosatrienoic acid.
    J Cell Biol. 2008 Apr 7;181(1):143-55 PMID: 18378772
  31. Activation of TRPV4 channels (hVRL-2/mTRP12) by phorbol derivatives.
    J Biol Chem. 2002 Apr 19;277(16):13569-77 PMID: 11827975
  32. TRP channels entering the structural era.
    J Physiol. 2008 Aug 1;586(15):3565-75 PMID: 18535090
  33. Practical factors affecting the performance of a thin-film phase plate for transmission electron microscopy.
    Ultramicroscopy. 2009 Mar;109(4):312-25 PMID: 19157711
  34. A role for AQP5 in activation of TRPV4 by hypotonicity: concerted involvement of AQP5 and TRPV4 in regulation of cell volume recovery.
    J Biol Chem. 2006 Jun 2;281(22):15485-95 PMID: 16571723
  35. A role of the transient receptor potential domain of vanilloid receptor I in channel gating.
    J Neurosci. 2007 Oct 24;27(43):11641-50 PMID: 17959807
  36. Structural analyses of the ankyrin repeat domain of TRPV6 and related TRPV ion channels.
    Biochemistry. 2008 Feb 26;47(8):2476-84 PMID: 18232717
  37. Differential regulation of TRPV1, TRPV3, and TRPV4 sensitivity through a conserved binding site on the ankyrin repeat domain.
    J Biol Chem. 2010 Jan 1;285(1):731-40 PMID: 19864432
  38. The structure of the prokaryotic cyclic nucleotide-modulated potassium channel MloK1 at 16 A resolution.
    Structure. 2007 Sep;15(9):1053-64 PMID: 17850745
  39. Differential activation of the volume-sensitive cation channel TRP12 (OTRPC4) and volume-regulated anion currents in HEK-293 cells.
    Pflugers Arch. 2001 Nov;443(2):227-33 PMID: 11713648
  40. The TRP superfamily of cation channels.
    Sci STKE. 2005 Feb 22;2005(272):re3 PMID: 15728426
  41. TRP channels as cellular sensors.
    Nature. 2003 Dec 4;426(6966):517-24 PMID: 14654832
  42. The TRPV4 channel: structure-function relationship and promiscuous gating behaviour.
    Pflugers Arch. 2003 Jun;446(3):298-303 PMID: 12715179
  43. SOSUI: classification and secondary structure prediction system for membrane proteins.
    Bioinformatics. 1998;14(4):378-9 PMID: 9632836
  44. Structure of the N-terminal ankyrin repeat domain of the TRPV2 ion channel.
    J Biol Chem. 2006 Sep 1;281(35):25006-10 PMID: 16809337
  45. TRPM8 voltage sensor mutants reveal a mechanism for integrating thermal and chemical stimuli.
    Nat Chem Biol. 2007 Mar;3(3):174-82 PMID: 17293875
  46. The TRPC3 channel has a large internal chamber surrounded by signal sensing antennas.
    J Mol Biol. 2007 Mar 23;367(2):373-83 PMID: 17258231
  47. Three-dimensional reconstruction using transmission electron microscopy reveals a swollen, bell-shaped structure of transient receptor potential melastatin type 2 cation channel.
    J Biol Chem. 2007 Dec 21;282(51):36961-70 PMID: 17940282
  48. X-ray crystal structure of a TRPM assembly domain reveals an antiparallel four-stranded coiled-coil.
    J Mol Biol. 2008 Nov 21;383(4):854-70 PMID: 18782578
  49. The ankyrin repeats of TRPV1 bind multiple ligands and modulate channel sensitivity.
    Neuron. 2007 Jun 21;54(6):905-18 PMID: 17582331
  50. Heat-evoked activation of TRPV4 channels in a HEK293 cell expression system and in native mouse aorta endothelial cells.
    J Biol Chem. 2002 Dec 6;277(49):47044-51 PMID: 12354759
  51. Molecular architecture of a retinal cGMP-gated channel: the arrangement of the cytoplasmic domains.
    EMBO J. 2002 May 1;21(9):2087-94 PMID: 11980705
  52. TRPP2 and TRPV4 form a polymodal sensory channel complex.
    J Cell Biol. 2008 Aug 11;182(3):437-47 PMID: 18695040
  53. How to measure and predict the molar absorption coefficient of a protein.
    Protein Sci. 1995 Nov;4(11):2411-23 PMID: 8563639
Article Info
Journal
The Journal of biological chemistry
Abbr.
J Biol Chem
ISSN
1083-351X
Published
2010-04-09
Epub
2009-00-31
Pages
11210-8
Language
English
Region
United States
NLM ID
2985121R
PMCID
PMC2856998
Subset
IM
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