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PMID: 19457423 Published · ppublish English Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't Review

Patterns and scales in gastrointestinal microbial ecology.

Gastroenterology ·Vol. 136 ·No. 6 ·2009-05-00 ·Pages 1989-2002

Camp JG, Kanther M, Semova I, Rawls JF

Abstract

The body surfaces of humans and other animals are colonized at birth by microorganisms. The majority of microbial residents on the human body exist within gastrointestinal (GI) tract communities, where they contribute to many aspects of host biology and pathobiology. Recent technological advances have expanded our ability to perceive the membership and physiologic traits of microbial communities along the GI tract. To translate this information into a mechanistic and practical understanding of host-microbe and microbe-microbe relationships, it is necessary to recast our conceptualization of the GI tract and its resident microbial communities in ecological terms. This review depicts GI microbial ecology in the context of 2 fundamental ecological concepts: (1) the patterns of biodiversity within the GI tract and (2) the scales of time, space, and environment within which we perceive those patterns. We show how this conceptual framework can be used to integrate our existing knowledge and identify important open questions in GI microbial ecology.

MeSH Terms
Animals Bacteria/genetics,isolation & purification,pathogenicity Gastrointestinal Tract/microbiology Humans Intestinal Mucosa/microbiology RNA, Bacterial/genetics
Chemicals
RNA, Bacterial
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Camp J Gray
Department of Cell and Molecular Physiology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina.
Kanther Michelle
Department of Cell and Molecular Physiology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina.
Semova Ivana
Department of Cell and Molecular Physiology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina.
Rawls John F
Department of Cell and Molecular Physiology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina.
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Article Info
Journal
Gastroenterology
Abbr.
Gastroenterology
ISSN
1528-0012
Published
2009-05-00
Epub
2009-00-07
Pages
1989-2002
Language
English
Region
United States
NLM ID
0374630
PMCID
PMC4841941
Subset
IM
Grants
NIEHS NIH HHS · P30 ES010126 · United States
NIDDK NIH HHS · P30 DK034987 · United States
NIDDK NIH HHS · DK081426 · United States
NIGMS NIH HHS · T32 GM007092 · United States
NIDDK NIH HHS · K01 DK073695 · United States
NIDDK NIH HHS · DK073695 · United States
NICHD NIH HHS · T32 HD046369 · United States
NIDDK NIH HHS · R01 DK081426 · United States
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