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PMID: 19261726 Published · ppublish English Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S.

Epigenetic mechanisms for nutrition determinants of later health outcomes.

The American journal of clinical nutrition ·Vol. 89 ·No. 5 ·2009-05-00 ·Pages 1488S-1493S

Zeisel SH

Abstract

Epigenetic marking on genes can determine whether or not genes are expressed. Epigenetic regulation is mediated by the addition of methyl groups to DNA cytosine bases, of methyl and acetyl groups to proteins (histones) around which DNA is wrapped, and by small interfering RNA molecules. Some components of epigenetic regulation have evolved to permit control of whether maternal or paternal genes are expressed. The epigenetic imprinting of IGF2 expression is an example of maternal and paternal epigenetic marking that modulates fetal growth and fetal size. However, epigenetic regulation also permits the fetus and the infant to adapt gene expression to the environment in which it is growing; sometimes when this adjustment goes awry, the risk of chronic disease is increased. Recent progress in the understanding of nutritional influences on epigenetics suggests that nutrients that are part of methyl-group metabolism can significantly influence epigenetics. During critical periods in development, dietary methyl-group intake (choline, methionine, and folate) can alter DNA and histone methylation, which results in lifelong changes in gene expression. In rodent models, pregnant dams that were fed diets high in methionine, folic acid, and choline produced offspring with different coat colors or with kinked tails. A number of syndromes in humans can be caused by defective epigenetic regulation, including Rett syndrome. There are interesting examples of the effects of nutrition in early life that result in altered health in adults, and some of these could be the result of altered epigenetic regulation of gene expression.

MeSH Terms
Animals Chromatin/genetics DNA/genetics DNA Methylation Epigenesis, Genetic Gene Amplification Gene Expression Regulation Genetic Code Genetic Markers Genomic Imprinting Histones/genetics Humans Insulin-Like Growth Factor II/genetics Models, Animal Nutritional Status RNA Interference RNA, Small Interfering/genetics
Chemicals
Chromatin Genetic Markers Histones RNA, Small Interfering Insulin-Like Growth Factor II DNA
Authors & Affiliations
1 authors, click to expand affiliations / ORCID
Zeisel Steven H
Nutrition Research Institute, the University of North Carolina, Chapel Hill, NC, USA. steven_zeisel@unc.edu
References (80)
80 references, click to expand
  1. G9a histone methyltransferase plays a dominant role in euchromatic histone H3 lysine 9 methylation and is essential for early embryogenesis.
    Genes Dev. 2002 Jul 15;16(14):1779-91 PMID: 12130538
  2. Genetic influences on blood lipids and cardiovascular disease risk: tools for primary prevention.
    Am J Clin Nutr. 2009 May;89(5):1509S-1517S PMID: 19339403
  3. Effects of choline deficiency and methotrexate treatment upon liver folate content and distribution.
    Cancer Res. 1991 Jan 1;51(1):16-21 PMID: 1988081
  4. Maternal epigenetics and methyl supplements affect agouti gene expression in Avy/a mice.
    FASEB J. 1998 Aug;12(11):949-57 PMID: 9707167
  5. Betaine in the treatment of homocystinuria due to 5,10-methylenetetrahydrofolate reductase deficiency.
    Eur J Pediatr. 1984 Jun;142(2):147-50 PMID: 6381059
  6. Characterization of the facilitative effects of perinatal choline supplementation on timing and temporal memory.
    Neuroreport. 1997 Sep 8;8(13):2831-5 PMID: 9376513
  7. Betaine as a determinant of postmethionine load total plasma homocysteine before and after B-vitamin supplementation.
    Arterioscler Thromb Vasc Biol. 2004 Feb;24(2):301-7 PMID: 14699020
  8. REST: a mammalian silencer protein that restricts sodium channel gene expression to neurons.
    Cell. 1995 Mar 24;80(6):949-57 PMID: 7697725
  9. Altered DNA methylation and genome instability: a new pathway to cancer?
    Proc Natl Acad Sci U S A. 1997 Mar 18;94(6):2103-5 PMID: 9122155
  10. Epigenomic profiling reveals DNA-methylation changes associated with major psychosis.
    Am J Hum Genet. 2008 Mar;82(3):696-711 PMID: 18319075
  11. Early risk determinants and later health outcomes: implications for research prioritization and the food supply. Introduction to the workshop.
    Am J Clin Nutr. 2009 May;89(5):1485S-1487S PMID: 19261725
  12. Childhood obesity: are genetic differences involved?
    Am J Clin Nutr. 2009 May;89(5):1494S-1501S PMID: 19261728
  13. The many faces of REST oversee epigenetic programming of neuronal genes.
    Curr Opin Neurobiol. 2005 Oct;15(5):500-6 PMID: 16150588
  14. Structure and catalytic mechanism of the human histone methyltransferase SET7/9.
    Nature. 2003 Feb 6;421(6923):652-6 PMID: 12540855
  15. Targeted mutation of the DNA methyltransferase gene results in embryonic lethality.
    Cell. 1992 Jun 12;69(6):915-26 PMID: 1606615
  16. Sex and menopausal status influence human dietary requirements for the nutrient choline.
    Am J Clin Nutr. 2007 May;85(5):1275-85 PMID: 17490963
  17. Beyond Watson and Crick: DNA methylation and molecular enzymology of DNA methyltransferases.
    Chembiochem. 2002 Apr 2;3(4):274-93 PMID: 11933228
  18. DNA methylation and mutation.
    Mutat Res. 1993 Jan;285(1):61-7 PMID: 7678134
  19. Set domain-containing protein, G9a, is a novel lysine-preferring mammalian histone methyltransferase with hyperactivity and specific selectivity to lysines 9 and 27 of histone H3.
    J Biol Chem. 2001 Jul 6;276(27):25309-17 PMID: 11316813
  20. CpG-rich islands and the function of DNA methylation.
    Nature. 1986 May 15-21;321(6067):209-13 PMID: 2423876
  21. Early determinants of development: a lipid perspective.
    Am J Clin Nutr. 2009 May;89(5):1523S-1529S PMID: 19321568
  22. Labile methyl group balances in the human: the role of sarcosine.
    Metabolism. 1980 Aug;29(8):707-20 PMID: 6157075
  23. Organizational changes in cholinergic activity and enhanced visuospatial memory as a function of choline administered prenatally or postnatally or both.
    Behav Neurosci. 1989 Dec;103(6):1234-41 PMID: 2610916
  24. Dietary choline deficiency alters global and gene-specific DNA methylation in the developing hippocampus of mouse fetal brains.
    FASEB J. 2006 Jan;20(1):43-9 PMID: 16394266
  25. Methyl-CpG binding proteins: specialized transcriptional repressors or structural components of chromatin?
    Cell Mol Life Sci. 2008 May;65(10):1509-22 PMID: 18322651
  26. Direct interaction between DNMT1 and G9a coordinates DNA and histone methylation during replication.
    Genes Dev. 2006 Nov 15;20(22):3089-103 PMID: 17085482
  27. Low dose betaine supplementation leads to immediate and long term lowering of plasma homocysteine in healthy men and women.
    J Nutr. 2003 Dec;133(12):4135-8 PMID: 14652361
  28. Driving research in infant and children's nutrition: a perspective on industry.
    Am J Clin Nutr. 2009 May;89(5):1530S-1532S PMID: 19279079
  29. Maternal dietary choline availability alters mitosis, apoptosis and the localization of TOAD-64 protein in the developing fetal rat septum.
    Brain Res Dev Brain Res. 1999 Jun 2;115(2):123-9 PMID: 10407130
  30. Genetic variation of folate-mediated one-carbon transfer pathway predicts susceptibility to choline deficiency in humans.
    Proc Natl Acad Sci U S A. 2005 Nov 1;102(44):16025-30 PMID: 16236726
  31. Choline deficiency in mice and humans is associated with increased plasma homocysteine concentration after a methionine load.
    Am J Clin Nutr. 2005 Feb;81(2):440-4 PMID: 15699233
  32. Early risk determinants and later health outcomes: implications for research prioritization and the food supply. Summary of the workshop.
    Am J Clin Nutr. 2009 May;89(5):1533S-1539S PMID: 19279080
  33. Folate status response to controlled folate intake is affected by the methylenetetrahydrofolate reductase 677C-->T polymorphism in young women.
    J Nutr. 2003 Dec;133(12):4107-11 PMID: 14652356
  34. Hyperhomocysteinemia due to methionine synthase deficiency, cblG: structure of the MTR gene, genotype diversity, and recognition of a common mutation, P1173L.
    Am J Hum Genet. 2002 Jul;71(1):143-53 PMID: 12068375
  35. Histone methyltransferases direct different degrees of methylation to define distinct chromatin domains.
    Mol Cell. 2003 Dec;12(6):1591-8 PMID: 14690610
  36. Prenatal choline exposure alters hippocampal responsiveness to cholinergic stimulation in adulthood.
    Brain Res Dev Brain Res. 2000 Sep 30;123(1):25-32 PMID: 11020547
  37. The methylenetetrahydrofolate reductase 677C->T polymorphism and dietary folate restriction affect plasma one-carbon metabolites and red blood cell folate concentrations and distribution in women.
    J Nutr. 2005 May;135(5):1040-4 PMID: 15867278
  38. M6P/IGF2R imprinting evolution in mammals.
    Mol Cell. 2000 Apr;5(4):707-16 PMID: 10882106
  39. DNA methylation in health and disease.
    Nat Rev Genet. 2000 Oct;1(1):11-9 PMID: 11262868
  40. Localized domains of G9a-mediated histone methylation are required for silencing of neuronal genes.
    Mol Cell. 2004 Jun 18;14(6):727-38 PMID: 15200951
  41. Neither methionine nor nitrous oxide inactivation of methionine synthase affect the concentration of 5,10-methylenetetrahydrofolate in rat liver.
    J Nutr. 2003 Feb;133(2):476-8 PMID: 12566486
  42. Choline availability modulates human neuroblastoma cell proliferation and alters the methylation of the promoter region of the cyclin-dependent kinase inhibitor 3 gene.
    J Neurochem. 2004 Jun;89(5):1252-9 PMID: 15147518
  43. Effects of choline deficiency and methotrexate treatment upon rat liver.
    J Nutr Biochem. 1990 Oct;1(10):533-41 PMID: 15539171
  44. Promoter-wide hypermethylation of the ribosomal RNA gene promoter in the suicide brain.
    PLoS One. 2008 May 07;3(5):e2085 PMID: 18461137
  45. Pathways and regulation of homocysteine metabolism in mammals.
    Semin Thromb Hemost. 2000;26(3):219-25 PMID: 11011839
  46. Common genetic polymorphisms affect the human requirement for the nutrient choline.
    FASEB J. 2006 Jul;20(9):1336-44 PMID: 16816108
  47. Effect of choline deficiency on S-adenosylmethionine and methionine concentrations in rat liver.
    Biochem J. 1989 May 1;259(3):725-9 PMID: 2730584
  48. Hypertrophy of basal forebrain neurons and enhanced visuospatial memory in perinatally choline-supplemented rats.
    Brain Res. 1998 Jun 1;794(2):225-38 PMID: 9622639
  49. Phosphatidylethanolamine N-methyltransferase (PEMT) gene expression is induced by estrogen in human and mouse primary hepatocytes.
    FASEB J. 2007 Aug;21(10):2622-32 PMID: 17456783
  50. Severe folate deficiency causes secondary depletion of choline and phosphocholine in rat liver.
    J Nutr. 1994 Nov;124(11):2197-203 PMID: 7965204
  51. The potential role of epigenomic dysregulation in complex human disease.
    Trends Genet. 2007 Nov;23(11):588-95 PMID: 17953999
  52. Epigenetic programming by maternal behavior.
    Nat Neurosci. 2004 Aug;7(8):847-54 PMID: 15220929
  53. Betaine-homocysteine methyltransferase expression in porcine and human tissues and chromosomal localization of the human gene.
    Arch Biochem Biophys. 1997 Sep 1;345(1):171-4 PMID: 9281325
  54. REST and its corepressors mediate plasticity of neuronal gene chromatin throughout neurogenesis.
    Cell. 2005 May 20;121(4):645-657 PMID: 15907476
  55. Betaine supplementation lowers plasma homocysteine in healthy men and women.
    J Nutr. 2003 May;133(5):1291-5 PMID: 12730412
  56. Mammalian DNA methyltransferases: a structural perspective.
    Structure. 2008 Mar;16(3):341-50 PMID: 18334209
  57. Prenatal dietary choline supplementation decreases the threshold for induction of long-term potentiation in young adult rats.
    J Neurophysiol. 1998 Apr;79(4):1790-6 PMID: 9535948
  58. Chromatin structure and epigenetics.
    Biochem Pharmacol. 2006 Nov 30;72(11):1563-9 PMID: 16836980
  59. Choline availability alters embryonic development of the hippocampus and septum in the rat.
    Brain Res Dev Brain Res. 1999 Mar 12;113(1-2):13-20 PMID: 10064869
  60. Controlling the double helix.
    Nature. 2003 Jan 23;421(6921):448-53 PMID: 12540921
  61. The 1298A-->C polymorphism in methylenetetrahydrofolate reductase (MTHFR): in vitro expression and association with homocysteine.
    Atherosclerosis. 2001 Jun;156(2):409-15 PMID: 11395038
  62. Perinatal choline supplementation increases the threshold for chunking in spatial memory.
    Neuroreport. 1997 Sep 29;8(14):3053-9 PMID: 9331913
  63. Pre- and postnatal choline supplementation produces long-term facilitation of spatial memory.
    Dev Psychobiol. 1988 May;21(4):339-53 PMID: 3378679
  64. A polymorphism, R653Q, in the trifunctional enzyme methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase/formyltetrahydrofolate synthetase is a maternal genetic risk factor for neural tube defects: report of the Birth Defects Research Group.
    Am J Hum Genet. 2002 Nov;71(5):1207-15 PMID: 12384833
  65. Choline availability to the developing rat fetus alters adult hippocampal long-term potentiation.
    Brain Res Dev Brain Res. 1999 Dec 10;118(1-2):159-67 PMID: 10611515
  66. DNA methylation landscapes: provocative insights from epigenomics.
    Nat Rev Genet. 2008 Jun;9(6):465-76 PMID: 18463664
  67. Can infant feeding choices modulate later obesity risk?
    Am J Clin Nutr. 2009 May;89(5):1502S-1508S PMID: 19321574
  68. Choline deficiency and methotrexate treatment induces marked but reversible changes in hepatic folate concentrations, serum homocysteine and DNA methylation rates in rats.
    J Am Coll Nutr. 1995 Oct;14(5):480-5 PMID: 8522727
  69. Metabolic imprinting of choline by its availability during gestation: implications for memory and attentional processing across the lifespan.
    Neurosci Biobehav Rev. 2003 Sep;27(4):385-99 PMID: 12946691
  70. Histone methyltransferases G9a and GLP form heteromeric complexes and are both crucial for methylation of euchromatin at H3-K9.
    Genes Dev. 2005 Apr 1;19(7):815-26 PMID: 15774718
  71. Choline supplementation during prenatal development reduces proactive interference in spatial memory.
    Brain Res Dev Brain Res. 1999 Dec 10;118(1-2):51-9 PMID: 10611503
  72. DNA methylation and imprinting: why bother?
    Trends Genet. 1997 Aug;13(8):323-9 PMID: 9260519
  73. Maternal methyl supplements in mice affect epigenetic variation and DNA methylation of offspring.
    J Nutr. 2002 Aug;132(8 Suppl):2393S-2400S PMID: 12163699
  74. Simultaneous temporal processing is sensitive to prenatal choline availability in mature and aged rats.
    Neuroreport. 1997 Sep 29;8(14):3045-51 PMID: 9331912
  75. Maternal and grandmaternal smoking patterns are associated with early childhood asthma.
    Chest. 2005 Apr;127(4):1232-41 PMID: 15821200
  76. Determinants of plasma total homocysteine concentration in the Framingham Offspring cohort.
    Am J Clin Nutr. 2001 Mar;73(3):613-21 PMID: 11237940
  77. Partitioning and plasticity of repressive histone methylation states in mammalian chromatin.
    Mol Cell. 2003 Dec;12(6):1577-89 PMID: 14690609
  78. The barrier function of an insulator couples high histone acetylation levels with specific protection of promoter DNA from methylation.
    Genes Dev. 2002 Jun 15;16(12):1540-54 PMID: 12080092
  79. Time to take epigenetic inheritance seriously.
    Eur J Hum Genet. 2002 Nov;10(11):669-71 PMID: 12404095
  80. Early determinants of cardiovascular disease: the role of early diet in later blood pressure control.
    Am J Clin Nutr. 2009 May;89(5):1518S-1522S PMID: 19297459
Article Info
Journal
The American journal of clinical nutrition
Abbr.
Am J Clin Nutr
ISSN
1938-3207
Published
2009-05-00
Epub
2009-00-04
Pages
1488S-1493S
Language
English
Region
United States
NLM ID
0376027
PMCID
PMC2677001
Subset
IM
Grants
NIDDK NIH HHS · R01 DK055865 · United States
NIDDK NIH HHS · DK56350 · United States
NIDDK NIH HHS · P30 DK056350 · United States
NIA NIH HHS · P01 AG009525 · United States
NIA NIH HHS · AG09525 · United States
NIDDK NIH HHS · DK55865 · United States
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