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PMID: 18682547 Published · ppublish English Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't

The Arabidopsis NFYA5 transcription factor is regulated transcriptionally and posttranscriptionally to promote drought resistance.

The Plant cell ·Vol. 20 ·No. 8 ·2008-08-00 ·Pages 2238-51

Li WX, Oono Y, Zhu J, He XJ, Wu JM, Iida K, Lu XY, Cui X, Jin H, Zhu JK

Abstract

Nuclear factor Y (NF-Y) is a ubiquitous transcription factor composed of three distinct subunits (NF-YA, NF-YB, and NF-YC). We found that the Arabidopsis thaliana NFYA5 transcript is strongly induced by drought stress in an abscisic acid (ABA)-dependent manner. Promoter:beta-glucuronidase analyses showed that NFYA5 was highly expressed in vascular tissues and guard cells and that part of the induction by drought was transcriptional. NFYA5 contains a target site for miR169, which targets mRNAs for cleavage or translational repression. We found that miR169 was downregulated by drought stress through an ABA-dependent pathway. Analysis of the expression of miR169 precursors showed that miR169a and miR169c were substantially downregulated by drought stress. Coexpression of miR169 and NFYA5 suggested that miR169a was more efficient than miR169c at repressing the NFYA5 mRNA level. nfya5 knockout plants and plants overexpressing miR169a showed enhanced leaf water loss and were more sensitive to drought stress than wild-type plants. By contrast, transgenic Arabidopsis plants overexpressing NFYA5 displayed reduced leaf water loss and were more resistant to drought stress than the wild type. Microarray analysis indicated that NFYA5 is crucial for the expression of a number of drought stress-responsive genes. Thus, NFYA5 is important for drought resistance, and its induction by drought stress occurs at both the transcriptional and posttranscriptional levels.

MeSH Terms
Abscisic Acid/pharmacology Adaptation, Physiological/drug effects,genetics,physiology Arabidopsis/drug effects,genetics,metabolism Arabidopsis Proteins/genetics,metabolism,physiology CCAAT-Binding Factor/genetics,metabolism,physiology Droughts Gene Expression Regulation, Plant/drug effects MicroRNAs/genetics,metabolism Oligonucleotide Array Sequence Analysis RNA, Messenger/genetics,metabolism Transcription, Genetic/drug effects
Chemicals
Arabidopsis Proteins CCAAT-Binding Factor MIRN169 microRNA, Arabidopsis MicroRNAs NFYA5 protein, Arabidopsis RNA, Messenger Abscisic Acid
Authors & Affiliations
10 authors, click to expand affiliations / ORCID
Li Wen-Xue
Key Laboratory of Plant and Soil Interactions, College of Resources and Environmental Sciences, China Agricultural University, Beijing 100094, China.
Oono Youko
Zhu Jianhua
He Xin-Jian
Wu Jian-Min
Iida Kei
Lu Xiao-Yan
Cui Xinping
Jin Hailing
Zhu Jian-Kang
References (47)
47 references, click to expand
  1. Posttranscriptional induction of two Cu/Zn superoxide dismutase genes in Arabidopsis is mediated by downregulation of miR398 and important for oxidative stress tolerance.
    Plant Cell. 2006 Aug;18(8):2051-65 PMID: 16861386
  2. siRNA and miRNA: an insight into RISCs.
    Trends Biochem Sci. 2005 Feb;30(2):106-14 PMID: 15691656
  3. Computational identification of plant microRNAs and their targets, including a stress-induced miRNA.
    Mol Cell. 2004 Jun 18;14(6):787-99 PMID: 15200956
  4. Methods and concepts in quantifying resistance to drought, salt and freezing, abiotic stresses that affect plant water status.
    Plant J. 2006 Feb;45(4):523-39 PMID: 16441347
  5. The NF-YB/NF-YC structure gives insight into DNA binding and transcription regulation by CCAAT factor NF-Y.
    J Biol Chem. 2003 Jan 10;278(2):1336-45 PMID: 12401788
  6. From laboratory to field. Using information from Arabidopsis to engineer salt, cold, and drought tolerance in crops.
    Plant Physiol. 2004 Jun;135(2):615-21 PMID: 15173567
  7. Upregulation of an Arabidopsis RING-H2 gene, XERICO, confers drought tolerance through increased abscisic acid biosynthesis.
    Plant J. 2006 Aug;47(3):343-55 PMID: 16792696
  8. Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis.
    Cell. 2005 Dec 29;123(7):1279-91 PMID: 16377568
  9. Molecular responses to drought and cold stress.
    Curr Opin Biotechnol. 1996 Apr;7(2):161-7 PMID: 8791336
  10. Overexpressing a NAM, ATAF, and CUC (NAC) transcription factor enhances drought resistance and salt tolerance in rice.
    Proc Natl Acad Sci U S A. 2006 Aug 29;103(35):12987-92 PMID: 16924117
  11. Role of farnesyltransferase in ABA regulation of guard cell anion channels and plant water loss.
    Science. 1998 Oct 9;282(5387):287-90 PMID: 9765153
  12. Plant nuclear factor Y (NF-Y) B subunits confer drought tolerance and lead to improved corn yields on water-limited acres.
    Proc Natl Acad Sci U S A. 2007 Oct 16;104(42):16450-5 PMID: 17923671
  13. MtHAP2-1 is a key transcriptional regulator of symbiotic nodule development regulated by microRNA169 in Medicago truncatula.
    Genes Dev. 2006 Nov 15;20(22):3084-8 PMID: 17114582
  14. Gene Expression Omnibus: NCBI gene expression and hybridization array data repository.
    Nucleic Acids Res. 2002 Jan 1;30(1):207-10 PMID: 11752295
  15. MicroRNAS and their regulatory roles in plants.
    Annu Rev Plant Biol. 2006;57:19-53 PMID: 16669754
  16. A miRNA involved in phosphate-starvation response in Arabidopsis.
    Curr Biol. 2005 Nov 22;15(22):2038-43 PMID: 16303564
  17. Transcriptional regulatory networks in cellular responses and tolerance to dehydration and cold stresses.
    Annu Rev Plant Biol. 2006;57:781-803 PMID: 16669782
  18. Redundancy and specialization among plant microRNAs: role of the MIR164 family in developmental robustness.
    Development. 2007 Mar;134(6):1051-60 PMID: 17287247
  19. Summaries of Affymetrix GeneChip probe level data.
    Nucleic Acids Res. 2003 Feb 15;31(4):e15 PMID: 12582260
  20. Cell signaling during cold, drought, and salt stress.
    Plant Cell. 2002;14 Suppl:S165-83 PMID: 12045276
  21. Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis.
    Plant Cell. 2004 Aug;16(8):2001-19 PMID: 15258262
  22. Transcription factors in plant defense and stress responses.
    Curr Opin Plant Biol. 2002 Oct;5(5):430-6 PMID: 12183182
  23. Unraveling abiotic stress tolerance mechanisms--getting genomics going.
    Curr Opin Plant Biol. 2006 Apr;9(2):180-8 PMID: 16458043
  24. Detection of 91 potential conserved plant microRNAs in Arabidopsis thaliana and Oryza sativa identifies important target genes.
    Proc Natl Acad Sci U S A. 2004 Aug 3;101(31):11511-6 PMID: 15272084
  25. The molecular biology of the CCAAT-binding factor NF-Y.
    Gene. 1999 Oct 18;239(1):15-27 PMID: 10571030
  26. Light, temperature, and anthocyanin production.
    Plant Physiol. 1986 Jul;81(3):922-4 PMID: 16664926
  27. microRNA-directed phasing during trans-acting siRNA biogenesis in plants.
    Cell. 2005 Apr 22;121(2):207-21 PMID: 15851028
  28. Bioconductor: open software development for computational biology and bioinformatics.
    Genome Biol. 2004;5(10):R80 PMID: 15461798
  29. Small RNAs as big players in plant abiotic stress responses and nutrient deprivation.
    Trends Plant Sci. 2007 Jul;12(7):301-9 PMID: 17573231
  30. Salt and drought stress signal transduction in plants.
    Annu Rev Plant Biol. 2002;53:247-73 PMID: 12221975
  31. Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance.
    Science. 1998 Apr 3;280(5360):104-6 PMID: 9525853
  32. CONSTANS and the CCAAT box binding complex share a functionally important domain and interact to regulate flowering of Arabidopsis.
    Plant Cell. 2006 Nov;18(11):2971-84 PMID: 17138697
  33. Role of microRNAs in plant and animal development.
    Science. 2003 Jul 18;301(5631):336-8 PMID: 12869753
  34. Regulation of novel members of the Arabidopsis thaliana CCAAT-binding nuclear factor Y subunits.
    Gene. 2002 Jan 23;283(1-2):41-8 PMID: 11867211
  35. Cloning and characterization of microRNAs from rice.
    Plant Cell. 2005 May;17(5):1397-411 PMID: 15805478
  36. Inactivation of AtRac1 by abscisic acid is essential for stomatal closure.
    Genes Dev. 2001 Jul 15;15(14):1808-16 PMID: 11459830
  37. RankProd: a bioconductor package for detecting differentially expressed genes in meta-analysis.
    Bioinformatics. 2006 Nov 15;22(22):2825-7 PMID: 16982708
  38. Cleavage of Scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA.
    Science. 2002 Sep 20;297(5589):2053-6 PMID: 12242443
  39. Regulatory network of gene expression in the drought and cold stress responses.
    Curr Opin Plant Biol. 2003 Oct;6(5):410-7 PMID: 12972040
  40. Arabidopsis LEAFY COTYLEDON1 represents a functionally specialized subunit of the CCAAT binding transcription factor.
    Proc Natl Acad Sci U S A. 2003 Feb 18;100(4):2152-6 PMID: 12578989
  41. Arabidopsis LEAFY COTYLEDON1 is sufficient to induce embryo development in vegetative cells.
    Cell. 1998 Jun 26;93(7):1195-205 PMID: 9657152
  42. MicroRNAs: genomics, biogenesis, mechanism, and function.
    Cell. 2004 Jan 23;116(2):281-97 PMID: 14744438
  43. Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae.
    J Mol Biol. 2000 Mar 10;296(5):1205-14 PMID: 10698627
  44. Rank products: a simple, yet powerful, new method to detect differentially regulated genes in replicated microarray experiments.
    FEBS Lett. 2004 Aug 27;573(1-3):83-92 PMID: 15327980
  45. A pathogen-inducible endogenous siRNA in plant immunity.
    Proc Natl Acad Sci U S A. 2006 Nov 21;103(47):18002-7 PMID: 17071740
  46. THE MOLECULAR BASIS OF DEHYDRATION TOLERANCE IN PLANTS.
    Annu Rev Plant Physiol Plant Mol Biol. 1996 Jun;47:377-403 PMID: 15012294
  47. Improving plant drought, salt, and freezing tolerance by gene transfer of a single stress-inducible transcription factor.
    Nat Biotechnol. 1999 Mar;17(3):287-91 PMID: 10096298
Article Info
Journal
The Plant cell
Abbr.
Plant Cell
ISSN
1040-4651
Published
2008-08-00
Epub
2008-00-05
Pages
2238-51
Language
English
Region
England
NLM ID
9208688
PMCID
PMC2553615
Subset
IM
Grants
NIGMS NIH HHS · R01 GM059138 · United States
NIGMS NIH HHS · R01 GM070795 · United States
NIGMS NIH HHS · R01GM059138 · United States
NIGMS NIH HHS · R01GM070795 · United States
Databases
GEO
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