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PMID: 1650468 Published · ppublish English Journal Article Research Support, U.S. Gov't, Non-P.H.S. Research Support, U.S. Gov't, P.H.S.

The herpes simplex virus 1 segment inversion site is specifically cleaved by a virus-induced nuclear endonuclease.

Wohlrab F, Chatterjee S, Wells RD

Abstract

Nuclear extracts from several tissue culture cell lines (human, primate, and murine) contain an endonuclease that specifically cleaves sequences at the herpes simplex virus 1 (HSV-1) segment inversion site. Mapping studies identified the preferential site of cleavage as a set of tandemly repeated dodecamers, the DR2 repeats. Endonuclease levels vary according to the proliferative state of the cell; little or no activity is detectable in extracts from quiescent cells, whereas high levels are expressed in dividing cells. Also, infection of density-arrested BSC-1 cells with HSV-1 induces a substantial increase (at least 35-fold) in endonucleolytic activity, which is first detectable at about 1 hr after infection at 32 degrees C. The elevated levels of enzyme activity then persist throughout the viral life cycle. In addition to the HSV-1 DR2 repeats, certain other G+C-rich sequences with an asymmetric distribution of purines and pyrimidines on the DNA strands and with appropriate sequences and lengths are substrates for the nuclease. These data indicate that target site recognition by the enzyme is conformation specific rather than sequence specific.

MeSH Terms
Animals Base Sequence Cell Line Cell Nucleus/enzymology Cell Transformation, Viral Chromosome Inversion DNA, Viral/genetics,metabolism Endonucleases/metabolism Kinetics Molecular Sequence Data Plasmids Repetitive Sequences, Nucleic Acid Simplexvirus/genetics,metabolism Substrate Specificity
Chemicals
DNA, Viral Endonucleases
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Wohlrab F
Department of Biochemistry, School of Medicine, University of Alabama, Birmingham 35294.
Chatterjee S
Wells R D
References (43)
43 references, click to expand
  1. Conversion of a fraction of the unique sequence to part of the inverted repeats in the S component of the herpes simplex virus type 1 genome.
    J Gen Virol. 1986 Jun;67 ( Pt 6):1035-48 PMID: 3011969
  2. DNA H form requires a homopurine-homopyrimidine mirror repeat.
    Nature. 1987 Dec 3-9;330(6147):495-7 PMID: 2825028
  3. Consecutive A X T pairs can adopt a left-handed DNA structure.
    Proc Natl Acad Sci U S A. 1986 Aug;83(16):5884-8 PMID: 3016726
  4. The segment inversion site of herpes simplex virus type 1 adopts a novel DNA structure.
    J Biol Chem. 1987 May 5;262(13):6407-16 PMID: 3032967
  5. Isomerization of herpes simplex virus 1 genome: identification of the cis-acting and recombination sites within the domain of the a sequence.
    Cell. 1985 Jul;41(3):803-11 PMID: 2988789
  6. Isolation of novel herpes simplex virus type 1 derivatives with tandem duplications of DNA sequences encoding immediate-early mRNA-5 and an origin of replication.
    J Virol. 1985 Feb;53(2):607-15 PMID: 2982038
  7. A noninverting genome of a viable herpes simplex virus 1: presence of head-to-tail linkages in packaged genomes and requirements for circularization after infection.
    J Virol. 1985 Feb;53(2):587-95 PMID: 2982037
  8. Nucleotide sequence and structural features of a novel US-a junction present in a defective herpes simplex virus genome.
    J Virol. 1985 Jul;55(1):140-6 PMID: 2989551
  9. The chemistry and biology of unusual DNA structures adopted by oligopurine.oligopyrimidine sequences.
    FASEB J. 1988 Nov;2(14):2939-49 PMID: 3053307
  10. Slight changes in conditions influence the family of non-B-DNA conformations of the herpes simplex virus type 1 DR2 repeats.
    J Biol Chem. 1989 May 15;264(14):8207-13 PMID: 2542269
  11. Characterization of DNA sequence-common and sequence-specific proteins binding to cis-acting sites for cleavage of the terminal a sequence of the herpes simplex virus 1 genome.
    J Virol. 1989 Mar;63(3):1059-68 PMID: 2536820
  12. Stabilization of Z DNA in vivo by localized supercoiling.
    Science. 1989 Oct 20;246(4928):358-63 PMID: 2678475
  13. Intramolecular DNA triplexes in supercoiled plasmids. II. Effect of base composition and noncentral interruptions on formation and stability.
    J Biol Chem. 1989 Apr 5;264(10):5950-6 PMID: 2647731
  14. Recognition of (dG)n.(dC)n sequences by endonuclease G. Characterization of the calf thymus nuclease.
    J Biol Chem. 1989 Feb 25;264(6):3301-10 PMID: 2914952
  15. Magnesium ion-dependent triple-helix structure formed by homopurine-homopyrimidine sequences in supercoiled plasmid DNA.
    Proc Natl Acad Sci U S A. 1988 Jun;85(11):3781-5 PMID: 3375241
  16. An oligopurine sequence bias occurs in eukaryotic viruses.
    Nucleic Acids Res. 1988 Feb 25;16(4):1517-28 PMID: 3347495
  17. Endonuclease G: a (dG)n X (dC)n-specific DNase from higher eukaryotes.
    EMBO J. 1987 Feb;6(2):401-7 PMID: 3582364
  18. A pH-dependent structural transition in the homopurine-homopyrimidine tract in superhelical DNA.
    J Biomol Struct Dyn. 1985 Oct;3(2):327-38 PMID: 3917024
  19. Hypervariable 'minisatellite' regions in human DNA.
    Nature. 1985 Mar 7-13;314(6006):67-73 PMID: 3856104
  20. Poly(dG)-poly(dC) sequences, under torsional stress, induce an altered DNA conformation upon neighboring DNA sequences.
    Cell. 1985 Nov;43(1):199-206 PMID: 4075394
  21. The crystal structure of d(G-G-G-G-C-C-C-C). A model for poly(dG).poly(dC).
    J Mol Biol. 1985 Jun 5;183(3):385-96 PMID: 4020865
  22. Substrate specificity of HeLa endonuclease R. A G-specific mammalian endonuclease.
    J Biol Chem. 1990 Jul 5;265(19):10842-50 PMID: 2358442
  23. Purification and characterization of HeLa endonuclease R. A G-specific mammalian endonuclease.
    J Biol Chem. 1990 Jul 5;265(19):10836-41 PMID: 2358441
  24. Construction of a double-jointed herpes simplex viral DNA molecule: inverted repeats are required for segment inversion, and direct repeats promote deletions.
    Virology. 1981 Aug;113(1):345-62 PMID: 6267787
  25. Structure and role of the herpes simplex virus DNA termini in inversion, circularization and generation of virion DNA.
    Cell. 1982 Nov;31(1):89-97 PMID: 6297756
  26. Herpesvirus-dependent amplification and inversion of cell-associated viral thymidine kinase gene flanked by viral a sequences and linked to an origin of viral DNA replication.
    Proc Natl Acad Sci U S A. 1982 Sep;79(18):5626-30 PMID: 6291055
  27. Effects of neighboring DNA homopolymers on the biochemical and physical properties of the Escherichia coli lactose promoter. I. Cloning and characterization studies.
    J Biol Chem. 1982 Nov 10;257(21):12954-61 PMID: 6290487
  28. Characterization of a viable, noninverting herpes simplex virus 1 genome derived by insertion and deletion of sequences at the junction of components L and S.
    Proc Natl Acad Sci U S A. 1983 May;80(9):2690-4 PMID: 6302700
  29. Identification of two herpes simplex virus type 1-induced proteins (21K and 22K) which interact specifically with the a sequence of herpes simplex virus DNA.
    J Gen Virol. 1984 Sep;65 ( Pt 9):1467-75 PMID: 6088679
  30. Nucleotide sequences of the joint between the L and S segments of herpes simplex virus types 1 and 2.
    J Gen Virol. 1981 Aug;55(Pt 2):315-31 PMID: 6270266
  31. Site-specific inversion sequence of the herpes simplex virus genome: domain and structural features.
    Proc Natl Acad Sci U S A. 1981 Nov;78(11):7047-51 PMID: 6273905
  32. Molecular engineering of the herpes simplex virus genome: insertion of a second L-S junction into the genome causes additional genome inversions.
    Cell. 1980 Nov;22(1 Pt 1):243-55 PMID: 6253078
  33. Dependence of DNA helix flexibility on base composition.
    Nature. 1983 Aug 25-31;304(5928):752-4 PMID: 6888544
  34. Anatomy of herpes simplex virus DNA: evidence for four populations of molecules that differ in the relative orientations of their long and short components.
    Proc Natl Acad Sci U S A. 1975 Nov;72(11):4243-7 PMID: 172900
  35. Intramolecular DNA triplexes in supercoiled plasmids.
    Proc Natl Acad Sci U S A. 1988 Sep;85(17):6292-6 PMID: 3413097
  36. The DNA sequence of the human beta-globin region is strongly biased in favor of long strings of contiguous purine or pyrimidine residues.
    Biochemistry. 1987 Dec 1;26(24):7870-5 PMID: 3427110
  37. Tetracycline promoter mutations decrease non-B DNA structural transitions, negative linking differences and deletions in recombinant plasmids in Escherichia coli.
    J Mol Biol. 1989 Jun 5;207(3):513-26 PMID: 2547968
  38. Inversion events in the HSV-1 genome are directly mediated by the viral DNA replication machinery and lack sequence specificity.
    Cell. 1988 Jul 29;54(3):369-81 PMID: 2840204
  39. Influence of DNA sequence on the formation of non-B right-handed helices in oligopurine.oligopyrimidine inserts in plasmids.
    J Biol Chem. 1988 May 25;263(15):7386-96 PMID: 2835375
  40. Supercoiling of the DNA template during transcription.
    Proc Natl Acad Sci U S A. 1987 Oct;84(20):7024-7 PMID: 2823250
  41. Recombinational hotspots within the herpes simplex virus DNA polymerase gene?
    Nucleic Acids Res. 1987 Sep 25;15(18):7647-8 PMID: 2821512
  42. In vitro excision of adeno-associated virus DNA from recombinant plasmids: isolation of an enzyme fraction from HeLa cells that cleaves DNA at poly(G) sequences.
    Mol Cell Biol. 1988 Jun;8(6):2513-22 PMID: 2841582
  43. Herpes simplex virus 1 recombinants with noninverting genomes frozen in different isomeric arrangements are capable of independent replication.
    J Virol. 1986 Aug;59(2):494-9 PMID: 3016310
Article Info
Journal
Proceedings of the National Academy of Sciences of the United States of America
Abbr.
Proc Natl Acad Sci U S A
ISSN
0027-8424
Published
1991-08-01
Pages
6432-6
Language
English
Region
United States
NLM ID
7505876
PMCID
PMC52099
Subset
IM
Grants
NIAID NIH HHS · AI27767-02 · United States
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