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PMID: 15966101 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S.

Overdrive, a T-DNA transmission enhancer on the A. tumefaciens tumour-inducing plasmid.

The EMBO journal ·Vol. 5 ·No. 6 ·1986-06-00 ·Pages 1137-42

Peralta EG, Hellmiss R, Ream W

Abstract

During crown gall tumorigenesis a specific segment of the Agrobacterium tumefaciens tumour-inducing (Ti) plasmid, the T-DNA, integrates into plant nuclear DNA. Similar 23-bp direct repeats at each end of the T region signal T-DNA borders, and T-DNA transmission (transfer and integration) requires the right-hand direct repeat. A chemically synthesized right border repeat in its wild-type orientation promotes T-DNA transmission at a low frequency; Ti plasmid sequences which normally flank the right repeat greatly stimulate the process. To identify flanking sequences required for full right border activity, we tested the activity of a border repeat surrounded by different amounts of normal flanking sequences. Efficient T-DNA transmission required a conserved sequence (5' TAAPuTPy-CTGTPuT-TGTTTGTTTG 3') which lies to the right of the two known right border repeats. In either orientation, a synthetic oligonucleotide containing this conserved sequence greatly stimulated the activity of a right border repeat, and a deletion removing 15 bp from the right end of this sequence destroyed it stimulatory effect. Thus, wild-type T-DNA transmission required both the 23-bp right border repeat and a conserved flanking sequence which we call overdrive.

MeSH Terms
Agrobacterium tumefaciens/genetics Base Sequence DNA, Bacterial/genetics Enhancer Elements, Genetic/genetics Genes, Bacterial/genetics Molecular Sequence Data Plant Tumor-Inducing Plasmids/genetics
Chemicals
DNA, Bacterial T-DNA
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Peralta E G
Institute for Molecular Biology, Department of Biology, Indiana University, Bloomington, IN 47405, USA.
Hellmiss R
Ream W
References (38)
38 references, click to expand
  1. The functional organization of the nopaline A. tumefaciens plasmid pTiC58.
    Plasmid. 1980 Mar;3(2):212-30 PMID: 6100894
  2. Site-specific DNA inversion is enhanced by a DNA sequence element in cis.
    Proc Natl Acad Sci U S A. 1985 Jun;82(11):3776-80 PMID: 16593573
  3. Supercoil sequencing: a fast and simple method for sequencing plasmid DNA.
    DNA. 1985 Apr;4(2):165-70 PMID: 3996185
  4. Isolation and identification of TL-DNA/plant junctions in Convolvulus arvensis transformed by Agrobacterium rhizogenes strain A4.
    EMBO J. 1985 Dec 1;4(12):3069-77 PMID: 16453649
  5. Octopine Ti-plasmid deletion mutants of agrobacterium tumefaciens with emphasis on the right side of the T-region.
    Plasmid. 1982 Jan;7(1):15-29 PMID: 6283573
  6. Genetic analysis of the RecE pathway of genetic recombination in Escherichia coli K-12.
    J Bacteriol. 1981 Jan;145(1):521-32 PMID: 6257642
  7. DNA from the A6S/2 crown gall tumor contains scrambled Ti-plasmid sequences near its junctions with plant DNA.
    Cell. 1982 Jul;29(3):1005-14 PMID: 7151163
  8. Plant-inducible virulence promoter of the Agrobacterium tumefaciens Ti plasmid.
    Nature. 1984 Dec 6-12;312(5994):564-6 PMID: 6504164
  9. T-DNA of the Agrobacterium Ti and Ri plasmids.
    Annu Rev Genet. 1982;16:357-84 PMID: 6297376
  10. The right hand copy of the nopaline Ti-plasmid 25 bp repeat is required for tumour formation.
    Nucleic Acids Res. 1984 Aug 10;12(15):6031-41 PMID: 6473100
  11. Integration and organization of Ti plasmid sequences in crown gall tumors.
    Cell. 1980 Mar;19(3):729-39 PMID: 7363328
  12. Nucleotide sequence analysis of TL-DNA of Agrobacterium rhizogenes agropine type plasmid. Identification of open reading frames.
    J Biol Chem. 1986 Jan 5;261(1):108-21 PMID: 3001043
  13. Integration and excision of bacteriophage lambda: the mechanism of conservation site specific recombination.
    Annu Rev Genet. 1981;15:143-67 PMID: 6461289
  14. A Tn3 lacZ transposon for the random generation of beta-galactosidase gene fusions: application to the analysis of gene expression in Agrobacterium.
    EMBO J. 1985 Apr;4(4):891-8 PMID: 2990912
  15. Transposon-encoded site-specific recombination: nature of the Tn3 DNA sequences which constitute the recombination site res.
    EMBO J. 1983;2(7):1055-60 PMID: 6313351
  16. Nopaline synthase: transcript mapping and DNA sequence.
    J Mol Appl Genet. 1982;1(6):561-73 PMID: 7153689
  17. Evidence for diverse types of large plasmids in tumor-inducing strains of Agrobacterium.
    J Bacteriol. 1976 Apr;126(1):157-65 PMID: 1262301
  18. Large plasmid in Agrobacterium tumefaciens essential for crown gall-inducing ability.
    Nature. 1974 Nov 8;252(5479):169-70 PMID: 4419109
  19. Construction and characterization of new cloning vehicles. II. A multipurpose cloning system.
    Gene. 1977;2(2):95-113 PMID: 344137
  20. The invertible P-DNA segment in the chromosome of Escherichia coli.
    EMBO J. 1985 Jan;4(1):237-42 PMID: 3894006
  21. Site-specific inversion: enhancers, recombination proteins, and mechanism.
    Cell. 1985 Jul;41(3):649-50 PMID: 2988781
  22. Restriction endonuclease mapping of the octopine tumor-inducing plasmid pTiAch5 of Agrobacterium tumefaciens.
    Plasmid. 1981 Sep;6(2):249-53 PMID: 6272339
  23. Genetic analysis of T-DNA transcripts in nopaline crown galls.
    Cell. 1983 Apr;32(4):1057-67 PMID: 6839358
  24. Genetic Identification of functions of TL-DNA transcripts in octopine crown galls.
    EMBO J. 1982;1(1):147-52 PMID: 16453404
  25. Multiple mutations in the T region of the Agrobacterium tumefaciens tumor-inducing plasmid.
    Proc Natl Acad Sci U S A. 1983 Mar;80(6):1660-4 PMID: 6300864
  26. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors.
    Gene. 1985;33(1):103-19 PMID: 2985470
  27. T-DNA border sequences required for crown gall tumorigenesis.
    Proc Natl Acad Sci U S A. 1985 Aug;82(15):5112-6 PMID: 3860847
  28. G inversion in bacteriophage Mu DNA is stimulated by a site within the invertase gene and a host factor.
    Cell. 1985 Jul;41(3):771-80 PMID: 3159478
  29. Further insight on the transferred-DNA of octopine crown gall.
    Mol Gen Genet. 1981;183(2):283-8 PMID: 6276681
  30. Right 25 bp terminus sequence of the nopaline T-DNA is essential for and determines direction of DNA transfer from agrobacterium to the plant genome.
    Cell. 1984 Sep;38(2):455-62 PMID: 6467373
  31. Mutational analysis of the virulence region of an Agrobacterium tumefaciens Ti plasmid.
    J Bacteriol. 1983 Feb;153(2):878-83 PMID: 6296058
  32. Short direct repeats flank the T-DNA on a nopaline Ti plasmid.
    Proc Natl Acad Sci U S A. 1982 Oct;79(20):6322-6 PMID: 16593241
  33. Hin-mediated site-specific recombination requires two 26 bp recombination sites and a 60 bp recombinational enhancer.
    Cell. 1985 Jul;41(3):781-91 PMID: 2988787
  34. Tumor induction by Agrobacterium tumefaciens: analysis of the boundaries of T-DNA.
    J Mol Appl Genet. 1982;1(4):361-70 PMID: 7108407
  35. A new method for sequencing DNA.
    Proc Natl Acad Sci U S A. 1977 Feb;74(2):560-4 PMID: 265521
  36. A general method for site-directed mutagenesis in prokaryotes.
    Nature. 1981 Jan 1;289(5793):85-8 PMID: 6256652
  37. Genetic analysis of crown gall: fine structure map of the T-DNA by site-directed mutagenesis.
    Cell. 1981 Nov;27(1 Pt 2):143-53 PMID: 6276020
  38. Internal organization, boundaries and integration of Ti-plasmid DNA in nopaline grown gall tumours.
    J Mol Biol. 1980 Dec 15;144(3):353-76 PMID: 7253020
Article Info
Journal
The EMBO journal
Abbr.
EMBO J
ISSN
0261-4189
Published
1986-06-00
Pages
1137-42
Language
English
Region
England
NLM ID
8208664
PMCID
PMC1166919
Subset
IM
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