Home LiteratureArticle Details
PMID: 15507649 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Evolutionary dynamics of the glycan shield of the human immunodeficiency virus envelope during natural infection and implications for exposure of the 2G12 epitope.

Journal of virology ·Vol. 78 ·No. 22 ·2004-11-00 ·Pages 12625-37

Dacheux L, Moreau A, Ataman-Onal Y, Biron F, Verrier B, Barin F

Abstract

Elucidation of the kinetics of exposure of neutralizing epitopes on the envelope of human immunodeficiency virus type 1 (HIV-1) during the course of infection may provide key information about how HIV escapes the immune system or why its envelope is such a poor immunogen to induce broadly efficient neutralizing antibodies. We analyzed the kinetics of exposure of the epitopes corresponding to the broadly neutralizing human monoclonal antibodies immunoglobulin G1b12 (IgG1b12), 2G12, and 2F5 at the quasispecies level during infection. We studied the antigenicity and sequences of 94 full-length envelope clones present during primary infection and at least 4 years later in four HIV-1 clade B-infected patients. No or only minor exposure differences were observed for the 2F5 and IgG1b12 epitopes between the early and late clones. Conversely, the envelope glycoproteins of the HIV-1 quasispecies present during primary infection did not expose the 2G12 neutralizing epitope, unlike those present after several years in three of the four patients. Sequence analysis revealed major differences at potential N-linked glycosylation sites between early and late clones, particularly at positions known to be important for 2G12 binding. Our study, in natural mutants, confirms that the glycosylation sites N295, N332, and N392 are essential for 2G12 binding. This study demonstrates the relationship between the evolving "glycan shield " of HIV and the kinetics of exposure of the 2G12 epitope during the course of natural infection.

MeSH Terms
Amino Acid Sequence Antibodies, Monoclonal/immunology CD4 Antigens/metabolism Epitopes Evolution, Molecular Gene Products, env/chemistry,immunology,metabolism Glycosylation HIV Antibodies/immunology HIV-1/immunology Humans Male Molecular Sequence Data Phylogeny Polysaccharides/immunology
Chemicals
Antibodies, Monoclonal CD4 Antigens Epitopes Gene Products, env HIV Antibodies Polysaccharides
Authors & Affiliations
6 authors, click to expand affiliations / ORCID
Dacheux Laurent
Laboratoire de Virologie, CHU Bretonneau, 37044 Tours cedex, France.
Moreau Alain
Ataman-Onal Yasemin
Biron François
Verrier Bernard
Barin Francis
References (52)
52 references, click to expand
  1. Broadly neutralizing antibodies targeted to the membrane-proximal external region of human immunodeficiency virus type 1 glycoprotein gp41.
    J Virol. 2001 Nov;75(22):10892-905 PMID: 11602729
  2. The HIV-1 envelope glycoproteins: fusogens, antigens, and immunogens.
    Science. 1998 Jun 19;280(5371):1884-8 PMID: 9632381
  3. The antigenic structure of the HIV gp120 envelope glycoprotein.
    Nature. 1998 Jun 18;393(6686):705-11 PMID: 9641684
  4. Protection of Macaques against pathogenic simian/human immunodeficiency virus 89.6PD by passive transfer of neutralizing antibodies.
    J Virol. 1999 May;73(5):4009-18 PMID: 10196297
  5. Neutralizing antibodies have limited effects on the control of established HIV-1 infection in vivo.
    Immunity. 1999 Apr;10(4):431-8 PMID: 10229186
  6. Comparison of complete env gene sequences from individuals with symptomatic primary HIV type 1 infection.
    AIDS Res Hum Retroviruses. 1999 Jul 20;15(11):1035-9 PMID: 10445815
  7. Fine definition of the epitope on the gp41 glycoprotein of human immunodeficiency virus type 1 for the neutralizing monoclonal antibody 2F5.
    J Virol. 2001 Nov;75(22):10906-11 PMID: 11602730
  8. Molecular characterization of five neutralizing anti-HIV type 1 antibodies: identification of nonconventional D segments in the human monoclonal antibodies 2G12 and 2F5.
    AIDS Res Hum Retroviruses. 1998 Sep 1;14(13):1115-28 PMID: 9737583
  9. MEGA2: molecular evolutionary genetics analysis software.
    Bioinformatics. 2001 Dec;17(12):1244-5 PMID: 11751241
  10. A potent cross-clade neutralizing human monoclonal antibody against a novel epitope on gp41 of human immunodeficiency virus type 1.
    AIDS Res Hum Retroviruses. 2001 Dec 10;17(18):1757-65 PMID: 11788027
  11. Broadly cross-reactive HIV-1-neutralizing human monoclonal Fab selected for binding to gp120-CD4-CCR5 complexes.
    Proc Natl Acad Sci U S A. 2002 May 14;99(10):6913-8 PMID: 11997472
  12. The mannose-dependent epitope for neutralizing antibody 2G12 on human immunodeficiency virus type 1 glycoprotein gp120.
    J Virol. 2002 Jul;76(14):7293-305 PMID: 12072528
  13. The broadly neutralizing anti-human immunodeficiency virus type 1 antibody 2G12 recognizes a cluster of alpha1-->2 mannose residues on the outer face of gp120.
    J Virol. 2002 Jul;76(14):7306-21 PMID: 12072529
  14. Fine mapping of the interaction of neutralizing and nonneutralizing monoclonal antibodies with the CD4 binding site of human immunodeficiency virus type 1 gp120.
    J Virol. 2003 Jan;77(1):642-58 PMID: 12477867
  15. Antibody neutralization and escape by HIV-1.
    Nature. 2003 Mar 20;422(6929):307-12 PMID: 12646921
  16. Rapid evolution of the neutralizing antibody response to HIV type 1 infection.
    Proc Natl Acad Sci U S A. 2003 Apr 1;100(7):4144-9 PMID: 12644702
  17. A novel human antibody against human immunodeficiency virus type 1 gp120 is V1, V2, and V3 loop dependent and helps delimit the epitope of the broadly neutralizing antibody immunoglobulin G1 b12.
    J Virol. 2003 Jun;77(12):6965-78 PMID: 12768015
  18. Antibody domain exchange is an immunological solution to carbohydrate cluster recognition.
    Science. 2003 Jun 27;300(5628):2065-71 PMID: 12829775
  19. Genetic and functional analysis of full-length human immunodeficiency virus type 1 env genes derived from brain and blood of patients with AIDS.
    J Virol. 2003 Nov;77(22):12336-45 PMID: 14581570
  20. Interclade neutralization and enhancement of human immunodeficiency virus type 1 identified by an assay using HeLa cells expressing both CD4 receptor and CXCR4/CCR5 coreceptors.
    J Infect Dis. 2004 Jan 15;189(2):322-7 PMID: 14722898
  21. Public health. A sound rationale needed for phase III HIV-1 vaccine trials.
    Science. 2004 Jan 16;303(5656):316 PMID: 14726576
  22. The neighbor-joining method: a new method for reconstructing phylogenetic trees.
    Mol Biol Evol. 1987 Jul;4(4):406-25 PMID: 3447015
  23. A conserved neutralizing epitope on gp41 of human immunodeficiency virus type 1.
    J Virol. 1993 Nov;67(11):6642-7 PMID: 7692082
  24. Neutralization of divergent human immunodeficiency virus type 1 variants and primary isolates by IAM-41-2F5, an anti-gp41 human monoclonal antibody.
    Proc Natl Acad Sci U S A. 1994 Apr 12;91(8):3348-52 PMID: 7512731
  25. Recognition properties of a panel of human recombinant Fab fragments to the CD4 binding site of gp120 that show differing abilities to neutralize human immunodeficiency virus type 1.
    J Virol. 1994 Aug;68(8):4821-8 PMID: 7518527
  26. Development of the anti-gp120 antibody response during seroconversion to human immunodeficiency virus type 1.
    J Virol. 1994 Aug;68(8):5142-55 PMID: 8035514
  27. Exploration of antigenic variation in gp120 from clades A through F of human immunodeficiency virus type 1 by using monoclonal antibodies.
    J Virol. 1994 Dec;68(12):8350-64 PMID: 7525988
  28. Efficient neutralization of primary isolates of HIV-1 by a recombinant human monoclonal antibody.
    Science. 1994 Nov 11;266(5187):1024-7 PMID: 7973652
  29. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.
    Nucleic Acids Res. 1994 Nov 11;22(22):4673-80 PMID: 7984417
  30. Virologic and immunologic characterization of long-term survivors of human immunodeficiency virus type 1 infection.
    N Engl J Med. 1995 Jan 26;332(4):201-8 PMID: 7808485
  31. Protection against HIV-1 infection in hu-PBL-SCID mice by passive immunization with a neutralizing human monoclonal antibody against the gp120 CD4-binding site.
    AIDS. 1995 Jun;9(6):F1-6 PMID: 7662189
  32. Cross-clade neutralization of primary isolates of human immunodeficiency virus type 1 by human monoclonal antibodies and tetrameric CD4-IgG.
    J Virol. 1995 Nov;69(11):6609-17 PMID: 7474069
  33. Human monoclonal antibody 2G12 defines a distinctive neutralization epitope on the gp120 glycoprotein of human immunodeficiency virus type 1.
    J Virol. 1996 Feb;70(2):1100-8 PMID: 8551569
  34. Restricted antigenic variability of the epitope recognized by the neutralizing gp41 antibody 2F5.
    AIDS. 1996 Jun;10(6):587-93 PMID: 8780812
  35. Neutralization of the human immunodeficiency virus type 1 primary isolate JR-FL by human monoclonal antibodies correlates with antibody binding to the oligomeric form of the envelope glycoprotein complex.
    J Virol. 1997 Apr;71(4):2779-85 PMID: 9060632
  36. Autologous and heterologous neutralizing antibody responses following initial seroconversion in human immunodeficiency virus type 1-infected individuals.
    J Virol. 1997 May;71(5):3734-41 PMID: 9094648
  37. Evaluation of monoclonal antibodies to human immunodeficiency virus type 1 primary isolates by neutralization assays: performance criteria for selecting candidate antibodies for clinical trials. AIDS Clinical Trials Group Antibody Selection Working Group.
    J Infect Dis. 1997 May;175(5):1056-62 PMID: 9129066
  38. Human immunodeficiency virus type 1 mutants that escape neutralization by human monoclonal antibody IgG1b12. off.
    J Virol. 1997 Sep;71(9):6869-74 PMID: 9261412
  39. A vaccine for HIV type 1: the antibody perspective.
    Proc Natl Acad Sci U S A. 1997 Sep 16;94(19):10018-23 PMID: 9294155
  40. Augmented serum neutralizing activity against primary human immunodeficiency virus type 1 (HIV-1) isolates in two groups of HIV-1-infected long-term nonprogressors.
    J Infect Dis. 1997 Nov;176(5):1180-7 PMID: 9359717
  41. Passive immunization with a human monoclonal antibody protects hu-PBL-SCID mice against challenge by primary isolates of HIV-1.
    Nat Med. 1997 Dec;3(12):1389-93 PMID: 9396610
  42. Human neutralizing monoclonal antibodies of the IgG1 subtype protect against mucosal simian-human immunodeficiency virus infection.
    Nat Med. 2000 Feb;6(2):200-6 PMID: 10655110
  43. Protection of macaques against vaginal transmission of a pathogenic HIV-1/SIV chimeric virus by passive infusion of neutralizing antibodies.
    Nat Med. 2000 Feb;6(2):207-10 PMID: 10655111
  44. Antigenic properties of recombinant envelope glycoproteins derived from T-cell-line-adapted isolates or primary human immunodeficiency virus isolates and their relationship to immunogenicity.
    Virology. 2000 Jun 5;271(2):350-62 PMID: 10860888
  45. The neutralizing antibody response to HIV-1: viral evasion and escape from humoral immunity.
    AIDS. 1999;13 Suppl A:S137-62 PMID: 10885772
  46. Structures of HIV-1 gp120 envelope glycoproteins from laboratory-adapted and primary isolates.
    Structure. 2000 Dec 15;8(12):1329-39 PMID: 11188697
  47. Antibody protects macaques against vaginal challenge with a pathogenic R5 simian/human immunodeficiency virus at serum levels giving complete neutralization in vitro.
    J Virol. 2001 Sep;75(17):8340-7 PMID: 11483779
  48. Crystal structure of a neutralizing human IGG against HIV-1: a template for vaccine design.
    Science. 2001 Aug 10;293(5532):1155-9 PMID: 11498595
  49. Passive immunization against oral AIDS virus transmission: an approach to prevent mother-to-infant HIV-1 transmission?
    J Med Primatol. 2001 Aug;30(4):190-6 PMID: 11555137
  50. The antibody response in HIV-1 infection.
    AIDS. 1997;11 Suppl A:S87-98 PMID: 9451972
  51. Analysis of the interaction of antibodies with a conserved enzymatically deglycosylated core of the HIV type 1 envelope glycoprotein 120.
    AIDS Res Hum Retroviruses. 1998 Feb 10;14(3):191-8 PMID: 9491908
  52. Structure of an HIV gp120 envelope glycoprotein in complex with the CD4 receptor and a neutralizing human antibody.
    Nature. 1998 Jun 18;393(6686):648-59 PMID: 9641677
Article Info
Journal
Journal of virology
Abbr.
J Virol
ISSN
0022-538X
Published
2004-11-00
Pages
12625-37
Language
English
Region
United States
NLM ID
0113724
PMCID
PMC525068
Subset
IM
Databases
GENBANK
AY535425, AY535426, AY535427, AY535428, AY535429, AY535430, AY535431, AY535432, AY535433, AY535434, AY535435, AY535436, AY535437, AY535438, AY535439, AY535440, AY535441, AY535442, AY535443, AY535444, AY535445, AY535446, AY535447, AY535448, AY535449, AY535450, AY535451, AY535452, AY535453, AY535454, AY535455, AY535456, AY535457, AY535458, AY535459, AY535460, AY535461, AY535462, AY535463, AY535464, AY535465, AY535466, AY535467, AY535468, AY535469, AY535470, AY535471, AY535472, AY535473, AY535474, AY535475, AY535476, AY535477, AY535478, AY535479, AY535480, AY535481, AY535482, AY535483, AY535484, AY535485, AY535486, AY535487, AY535488, AY535489, AY535490, AY535491, AY535492, AY535493, AY535494, AY535495, AY535496, AY535497, AY535498, AY535499, AY535500, AY535501, AY535502, AY535503, AY535504, AY535505, AY535506, AY535507, AY535508, AY535509, AY535510, AY535511, AY535512, AY535513, AY535514, AY535515, AY535516, AY535517, AY535518
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com