Abstract
Human antibody 2G12 neutralizes a broad range of human immunodeficiency virus type 1 (HIV-1) isolates by binding an unusually dense cluster of carbohydrate moieties on the "silent" face of the gp120 envelope glycoprotein. Crystal structures of Fab 2G12 and its complexes with the disaccharide Manalpha1-2Man and with the oligosaccharide Man9GlcNAc2 revealed that two Fabs assemble into an interlocked VH domain-swapped dimer. Further biochemical, biophysical, and mutagenesis data strongly support a Fab-dimerized antibody as the prevalent form that recognizes gp120. The extraordinary configuration of this antibody provides an extended surface, with newly described binding sites, for multivalent interaction with a conserved cluster of oligomannose type sugars on the surface of gp120. The unique interdigitation of Fab domains within an antibody uncovers a previously unappreciated mechanism for high-affinity recognition of carbohydrate or other repeating epitopes on cell or microbial surfaces.
MeSH Terms
Amino Acid Sequence
Antibodies, Monoclonal/chemistry,immunology,metabolism
Antibody Affinity
Antibody Specificity
Binding Sites, Antibody
Cell Adhesion Molecules/metabolism
Centrifugation, Density Gradient
Crystallization
Crystallography, X-Ray
Dimerization
Disaccharides/chemistry,metabolism
Epitopes
HIV Antibodies/chemistry,genetics,immunology,metabolism
HIV Envelope Protein gp120/immunology
HIV-1/immunology
Humans
Hydrogen Bonding
Immunoglobulin Fab Fragments/chemistry,genetics,immunology,metabolism
Immunoglobulin Heavy Chains/chemistry,immunology
Immunoglobulin Light Chains/chemistry,immunology
Immunoglobulin Variable Region/chemistry,immunology
Lectins/chemistry,immunology,metabolism
Lectins, C-Type/metabolism
Ligands
Mannans/chemistry,metabolism
Mannosides/chemistry,metabolism
Models, Molecular
Molecular Sequence Data
Mutagenesis
Oligosaccharides/chemistry,immunology,metabolism
Protein Conformation
Protein Structure, Tertiary
Receptors, Cell Surface/metabolism
Chemicals
Antibodies, Monoclonal
Cell Adhesion Molecules
DC-specific ICAM-3 grabbing nonintegrin
Disaccharides
Epitopes
HIV Antibodies
HIV Envelope Protein gp120
Immunoglobulin Fab Fragments
Immunoglobulin Heavy Chains
Immunoglobulin Light Chains
Immunoglobulin Variable Region
Lectins
Lectins, C-Type
Ligands
Mannans
Mannosides
Oligosaccharides
Receptors, Cell Surface
mannosyl alpha(1-6)-mannoside
mannosyl(9)-N-acetylglucosamine2
Authors & Affiliations
16 authors, click to expand affiliations / ORCID
Calarese Daniel A
Department of Molecular Biology, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA.
Scanlan Christopher N
Zwick Michael B
Deechongkit Songpon
Mimura Yusuke
Kunert Renate
Zhu Ping
Wormald Mark R
Stanfield Robyn L
Roux Kenneth H
Kelly Jeffery W
Rudd Pauline M
Dwek Raymond A
Katinger Hermann
Burton Dennis R
Wilson Ian A