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PMID: 12829775 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, P.H.S.

Antibody domain exchange is an immunological solution to carbohydrate cluster recognition.

Science (New York, N.Y.) ·Vol. 300 ·No. 5628 ·2003-06-27 ·Pages 2065-71

Calarese DA, Scanlan CN, Zwick MB, Deechongkit S, Mimura Y, Kunert R, Zhu P, Wormald MR, Stanfield RL, Roux KH, Kelly JW, Rudd PM, Dwek RA, Katinger H, Burton DR, Wilson IA

Abstract

Human antibody 2G12 neutralizes a broad range of human immunodeficiency virus type 1 (HIV-1) isolates by binding an unusually dense cluster of carbohydrate moieties on the "silent" face of the gp120 envelope glycoprotein. Crystal structures of Fab 2G12 and its complexes with the disaccharide Manalpha1-2Man and with the oligosaccharide Man9GlcNAc2 revealed that two Fabs assemble into an interlocked VH domain-swapped dimer. Further biochemical, biophysical, and mutagenesis data strongly support a Fab-dimerized antibody as the prevalent form that recognizes gp120. The extraordinary configuration of this antibody provides an extended surface, with newly described binding sites, for multivalent interaction with a conserved cluster of oligomannose type sugars on the surface of gp120. The unique interdigitation of Fab domains within an antibody uncovers a previously unappreciated mechanism for high-affinity recognition of carbohydrate or other repeating epitopes on cell or microbial surfaces.

MeSH Terms
Amino Acid Sequence Antibodies, Monoclonal/chemistry,immunology,metabolism Antibody Affinity Antibody Specificity Binding Sites, Antibody Cell Adhesion Molecules/metabolism Centrifugation, Density Gradient Crystallization Crystallography, X-Ray Dimerization Disaccharides/chemistry,metabolism Epitopes HIV Antibodies/chemistry,genetics,immunology,metabolism HIV Envelope Protein gp120/immunology HIV-1/immunology Humans Hydrogen Bonding Immunoglobulin Fab Fragments/chemistry,genetics,immunology,metabolism Immunoglobulin Heavy Chains/chemistry,immunology Immunoglobulin Light Chains/chemistry,immunology Immunoglobulin Variable Region/chemistry,immunology Lectins/chemistry,immunology,metabolism Lectins, C-Type/metabolism Ligands Mannans/chemistry,metabolism Mannosides/chemistry,metabolism Models, Molecular Molecular Sequence Data Mutagenesis Oligosaccharides/chemistry,immunology,metabolism Protein Conformation Protein Structure, Tertiary Receptors, Cell Surface/metabolism
Chemicals
Antibodies, Monoclonal Cell Adhesion Molecules DC-specific ICAM-3 grabbing nonintegrin Disaccharides Epitopes HIV Antibodies HIV Envelope Protein gp120 Immunoglobulin Fab Fragments Immunoglobulin Heavy Chains Immunoglobulin Light Chains Immunoglobulin Variable Region Lectins Lectins, C-Type Ligands Mannans Mannosides Oligosaccharides Receptors, Cell Surface mannosyl alpha(1-6)-mannoside mannosyl(9)-N-acetylglucosamine2
Authors & Affiliations
16 authors, click to expand affiliations / ORCID
Calarese Daniel A
Department of Molecular Biology, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA.
Scanlan Christopher N
Zwick Michael B
Deechongkit Songpon
Mimura Yusuke
Kunert Renate
Zhu Ping
Wormald Mark R
Stanfield Robyn L
Roux Kenneth H
Kelly Jeffery W
Rudd Pauline M
Dwek Raymond A
Katinger Hermann
Burton Dennis R
Wilson Ian A
Article Info
Journal
Science (New York, N.Y.)
Abbr.
Science
ISSN
1095-9203
Published
2003-06-27
Pages
2065-71
Language
English
Region
United States
NLM ID
0404511
Subset
IM
Grants
NIAID NIH HHS · AI33292 · United States
NIGMS NIH HHS · GM46192 · United States
Databases
PDB
Analysis Services
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