Home LiteratureArticle Details
PMID: 15342494 Published · ppublish English Comparative Study Journal Article Research Support, U.S. Gov't, Non-P.H.S. Research Support, U.S. Gov't, P.H.S.

Arabidopsis COP10 forms a complex with DDB1 and DET1 in vivo and enhances the activity of ubiquitin conjugating enzymes.

Genes & development ·Vol. 18 ·No. 17 ·2004-09-01 ·Pages 2172-81

Yanagawa Y, Sullivan JA, Komatsu S, Gusmaroli G, Suzuki G, Yin J, Ishibashi T, Saijo Y, Rubio V, Kimura S, Wang J, Deng XW

Abstract

COP10 is a ubiquitin-conjugating enzyme variant (UEV), which is thought to act together with COP1, DET1, and the COP9 signalosome (CSN) in Arabidopsis to repress photomorphogenesis. Here, we demonstrate that COP10 interacts with ubiquitin-conjugating enzymes (E2s) in vivo, and can enhance their activity in vitro, an activity distinct from previous characterized UEVs such as MMS2 and UEV1. Furthermore, we show that COP10 forms a complex with UV-damaged DNA-binding protein 1a (DDB1a) and de-etiolated 1 (DET1), and physically interacts with COP1 and the CSN. Purified CDD (COP10, DDB1, DET1) complex also shows enhancement of E2 activity (UEA) similar to that observed with COP10 itself. Our data suggests that COP10, along with COP1 and the CSN, promotes the degradation of positive regulators of photomorphogenesis, such as the transcription factor HY5, via the ubiquitin/26S proteasome system. Thus, the CDD complex may act as a ubiquitylation-promoting factor to regulate photomorphogenesis.

MeSH Terms
Arabidopsis/growth & development,metabolism Arabidopsis Proteins/metabolism COP9 Signalosome Complex Chromatography, Gel DNA Primers DNA-Binding Proteins/metabolism Immunoblotting Intracellular Signaling Peptides and Proteins Light Models, Biological Morphogenesis Nuclear Proteins/metabolism Plants, Genetically Modified Precipitin Tests Proteins/metabolism Ubiquitin/metabolism Ubiquitin-Conjugating Enzymes/metabolism Ubiquitin-Protein Ligases
Chemicals
Arabidopsis Proteins CSN1 protein, Arabidopsis DET1 protein, Arabidopsis DNA Primers DNA-Binding Proteins Intracellular Signaling Peptides and Proteins Nuclear Proteins Proteins Ubiquitin COP10 protein, Arabidopsis Ubiquitin-Conjugating Enzymes AT2G32950 protein, Arabidopsis Ubiquitin-Protein Ligases COP9 Signalosome Complex
Authors & Affiliations
12 authors, click to expand affiliations / ORCID
Yanagawa Yuki
Department of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, Connecticut 06520-8104, USA.
Sullivan James A
Komatsu Setsuko
Gusmaroli Giuliana
Suzuki Genki
Yin Jianning
Ishibashi Toyotaka
Saijo Yusuke
Rubio Vicente
Kimura Seisuke
Wang Jian
Deng Xing Wang
References (41)
41 references, click to expand
  1. Noncanonical MMS2-encoded ubiquitin-conjugating enzyme functions in assembly of novel polyubiquitin chains for DNA repair.
    Cell. 1999 Mar 5;96(5):645-53 PMID: 10089880
  2. The ubiquitin/26S proteasome pathway, the complex last chapter in the life of many plant proteins.
    Trends Plant Sci. 2003 Mar;8(3):135-42 PMID: 12663224
  3. Interactions of the COP9 signalosome with the E3 ubiquitin ligase SCFTIRI in mediating auxin response.
    Science. 2001 May 18;292(5520):1379-82 PMID: 11337587
  4. A subcomplex of the proteasome regulatory particle required for ubiquitin-conjugate degradation and related to the COP9-signalosome and eIF3.
    Cell. 1998 Sep 4;94(5):615-23 PMID: 9741626
  5. The xeroderma pigmentosum group E gene product DDB2 is a specific target of cullin 4A in mammalian cells.
    Mol Cell Biol. 2001 Oct;21(20):6738-47 PMID: 11564859
  6. The COP9 signalosome.
    Annu Rev Cell Dev Biol. 2003;19:261-86 PMID: 14570571
  7. The COP9 signalosome: regulating plant development through the control of proteolysis.
    Annu Rev Plant Biol. 2003;54:165-82 PMID: 14502989
  8. Arabidopsis homologs of a c-Jun coactivator are present both in monomeric form and in the COP9 complex, and their abundance is differentially affected by the pleiotropic cop/det/fus mutations.
    Plant Cell. 1998 Nov;10(11):1779-90 PMID: 9811788
  9. The proteasome, a novel protease regulated by multiple mechanisms.
    J Biol Chem. 1999 Aug 6;274(32):22123-6 PMID: 10428771
  10. Evidence for a physical association of the COP9 signalosome, the proteasome, and specific SCF E3 ligases in vivo.
    Curr Biol. 2003 Jul 1;13(13):R504-5 PMID: 12842023
  11. Ubiquitylation in plants: a post-genomic look at a post-translational modification.
    Trends Plant Sci. 2001 Oct;6(10):463-70 PMID: 11590065
  12. The naturally occurring mutants of DDB are impaired in stimulating nuclear import of the p125 subunit and E2F1-activated transcription.
    Mol Cell Biol. 1999 Jul;19(7):4935-43 PMID: 10373543
  13. Rice UV-damaged DNA binding protein homologues are most abundant in proliferating tissues.
    Gene. 2003 Apr 10;308:79-87 PMID: 12711392
  14. The COP1-SPA1 interaction defines a critical step in phytochrome A-mediated regulation of HY5 activity.
    Genes Dev. 2003 Nov 1;17(21):2642-7 PMID: 14597662
  15. Regulatory subunit interactions of the 26S proteasome, a complex problem.
    Trends Biochem Sci. 2000 Feb;25(2):83-8 PMID: 10664589
  16. A proteomic analysis of leaf sheaths from rice.
    J Biochem. 2002 Oct;132(4):613-20 PMID: 12359077
  17. Molecular characterization of subunit 6 of the COP9 signalosome and its role in multifaceted developmental processes in Arabidopsis.
    Plant Cell. 2001 Nov;13(11):2393-407 PMID: 11701877
  18. LAF1 ubiquitination by COP1 controls photomorphogenesis and is stimulated by SPA1.
    Nature. 2003 Jun 26;423(6943):995-9 PMID: 12827204
  19. LIGHT CONTROL OF SEEDLING DEVELOPMENT.
    Annu Rev Plant Physiol Plant Mol Biol. 1996 Jun;47:215-243 PMID: 15012288
  20. From seed to seed: the role of photoreceptors in Arabidopsis development.
    Dev Biol. 2003 Aug 15;260(2):289-97 PMID: 12921732
  21. Two interdependent basic domains in nucleoplasmin nuclear targeting sequence: identification of a class of bipartite nuclear targeting sequence.
    Cell. 1991 Feb 8;64(3):615-23 PMID: 1991323
  22. Expression of the p48 xeroderma pigmentosum gene is p53-dependent and is involved in global genomic repair.
    Proc Natl Acad Sci U S A. 1999 Jan 19;96(2):424-8 PMID: 9892649
  23. Arabidopsis COP10 is a ubiquitin-conjugating enzyme variant that acts together with COP1 and the COP9 signalosome in repressing photomorphogenesis.
    Genes Dev. 2002 Mar 1;16(5):554-9 PMID: 11877375
  24. A role of Arabidopsis COP9 signalosome in multifaceted developmental processes revealed by the characterization of its subunit 3.
    Development. 2001 Nov;128(21):4277-88 PMID: 11684663
  25. The COP9 signalosome interacts physically with SCF COI1 and modulates jasmonate responses.
    Plant Cell. 2003 May;15(5):1083-94 PMID: 12724535
  26. Characterization of two subunits of Arabidopsis 19S proteasome regulatory complex and its possible interaction with the COP9 complex.
    J Mol Biol. 1999 Jan 8;285(1):85-95 PMID: 9878390
  27. Proteasomes: structure and biology.
    J Biochem. 1998 Feb;123(2):195-204 PMID: 9538192
  28. Roles of mouse UBC13 in DNA postreplication repair and Lys63-linked ubiquitination.
    Gene. 2002 Feb 20;285(1-2):183-91 PMID: 12039045
  29. Arabidopsis COP8, COP10, and COP11 genes are involved in repression of photomorphogenic development in darkness.
    Plant Cell. 1994 May;6(5):629-43 PMID: 8038603
  30. Targeted destabilization of HY5 during light-regulated development of Arabidopsis.
    Nature. 2000 May 25;405(6785):462-6 PMID: 10839542
  31. Human De-etiolated-1 regulates c-Jun by assembling a CUL4A ubiquitin ligase.
    Science. 2004 Feb 27;303(5662):1371-4 PMID: 14739464
  32. The tail of a ubiquitin-conjugating enzyme redirects multi-ubiquitin chain synthesis from the lysine 48-linked configuration to a novel nonlysine-linked form.
    J Biol Chem. 1996 Nov 15;271(46):28766-71 PMID: 8910518
  33. DET1, a negative regulator of light-mediated development and gene expression in arabidopsis, encodes a novel nuclear-localized protein.
    Cell. 1994 Jul 15;78(1):109-16 PMID: 8033202
  34. The ubiquitin ligase activity in the DDB2 and CSA complexes is differentially regulated by the COP9 signalosome in response to DNA damage.
    Cell. 2003 May 2;113(3):357-67 PMID: 12732143
  35. The photomorphogenesis regulator DET1 binds the amino-terminal tail of histone H2B in a nucleosome context.
    Curr Biol. 2002 Sep 3;12(17):1529-34 PMID: 12225670
  36. Promotion of NEDD-CUL1 conjugate cleavage by COP9 signalosome.
    Science. 2001 May 18;292(5520):1382-5 PMID: 11337588
  37. A TSG101/MDM2 regulatory loop modulates MDM2 degradation and MDM2/p53 feedback control.
    Proc Natl Acad Sci U S A. 2001 Feb 13;98(4):1619-24 PMID: 11172000
  38. De-etiolated 1 and damaged DNA binding protein 1 interact to regulate Arabidopsis photomorphogenesis.
    Curr Biol. 2002 Sep 3;12(17):1462-72 PMID: 12225661
  39. Genetic and molecular analysis of an allelic series of cop1 mutants suggests functional roles for the multiple protein domains.
    Plant Cell. 1994 Apr;6(4):487-500 PMID: 8205001
  40. Human damage-specific DNA-binding protein p48. Characterization of XPE mutations and regulation following UV irradiation.
    J Biol Chem. 2000 Jul 14;275(28):21422-8 PMID: 10777490
  41. Role of UEV-1, an inactive variant of the E2 ubiquitin-conjugating enzymes, in in vitro differentiation and cell cycle behavior of HT-29-M6 intestinal mucosecretory cells.
    Mol Cell Biol. 1998 Jan;18(1):576-89 PMID: 9418904
Article Info
Journal
Genes & development
Abbr.
Genes Dev
ISSN
0890-9369
Published
2004-09-01
Pages
2172-81
Language
English
Region
United States
NLM ID
8711660
PMCID
PMC515294
Subset
IM
Grants
NIGMS NIH HHS · R01 GM047850 · United States
NIGMS NIH HHS · R37 GM047850 · United States
NIGMS NIH HHS · GM-47850 · United States
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com