Home LiteratureArticle Details
PMID: 9990057 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, P.H.S.

Recombination and transcription of the endogenous Ig heavy chain locus is effected by the Ig heavy chain intronic enhancer core region in the absence of the matrix attachment regions.

Sakai E, Bottaro A, Davidson L, Sleckman BP, Alt FW

Abstract

The intronic Ig heavy chain (IgH) enhancer, which consists of the core enhancer flanked by 5' and 3' matrix attachment regions, has been implicated in control of IgH locus recombination and transcription. To elucidate the regulatory functions of the core enhancer and its associated matrix attachment regions in the endogenous IgH locus, we have introduced targeted deletions of these elements, both individually and in combination, into an IgHa/b-heterozygous embryonic stem cell line. These embryonic stem cells were used to generate chimeric mice by recombination activating gene-2 (Rag-2)-deficient blastocyst complementation, and the effects of the introduced mutations were assayed in mutant B cells. We find that the core enhancer is necessary and sufficient to promote normal variable (V), diversity (D), and joining (J) segment recombination in developing B lineage cells and IgH locus transcription in mature B cells. Surprisingly, the 5' and 3' matrix attachment regions were dispensable for these processes.

MeSH Terms
Animals B-Lymphocytes/immunology Chimera Crosses, Genetic Embryo, Mammalian Enhancer Elements, Genetic Female Flow Cytometry Genes, Immunoglobulin Heterozygote Immunoglobulin Heavy Chains/genetics Immunoglobulin M/genetics Introns Male Mice Mice, Inbred C57BL Mice, Inbred CBA Recombination, Genetic Regulatory Sequences, Nucleic Acid Restriction Mapping Spleen/immunology Stem Cells Transcription, Genetic Transfection
Chemicals
Immunoglobulin Heavy Chains Immunoglobulin M
Authors & Affiliations
5 authors, click to expand affiliations / ORCID
Sakai E
The Center for Blood Research, Harvard Medical School, 200 Longwood Avenue, Boston, MA 02115, USA.
Bottaro A
Davidson L
Sleckman B P
Alt F W
References (65)
65 references, click to expand
  1. Position-dependent inhibition of class-switch recombination by PGK-neor cassettes inserted into the immunoglobulin heavy chain constant region locus.
    Proc Natl Acad Sci U S A. 1999 Mar 16;96(6):3000-5 PMID: 10077626
  2. Scaffold-associated regions: cis-acting determinants of chromatin structural loops and functional domains.
    Curr Opin Genet Dev. 1992 Apr;2(2):275-85 PMID: 1322207
  3. A tissue-specific MAR/SAR DNA-binding protein with unusual binding site recognition.
    Cell. 1992 Aug 21;70(4):631-45 PMID: 1505028
  4. RAG-2-deficient mice lack mature lymphocytes owing to inability to initiate V(D)J rearrangement.
    Cell. 1992 Mar 6;68(5):855-67 PMID: 1547487
  5. Biological significance of unwinding capability of nuclear matrix-associating DNAs.
    Science. 1992 Jan 10;255(5041):195-7 PMID: 1553545
  6. Production of homozygous mutant ES cells with a single targeting construct.
    Mol Cell Biol. 1992 May;12(5):2391-5 PMID: 1569957
  7. Regulation of immunoglobulin gene transcription.
    Int Rev Cytol. 1992;133:121-49 PMID: 1577586
  8. Immunoglobulin gene transcription.
    Annu Rev Immunol. 1991;9:373-98 PMID: 1910683
  9. Identification of a matrix-associated region 5' of an immunoglobulin heavy chain variable region gene.
    Mol Cell Biol. 1991 Oct;11(10):5206-11 PMID: 1922040
  10. Nuclear matrix attachment occurs in several regions of the IgH locus.
    Nucleic Acids Res. 1990 May 11;18(9):2643-8 PMID: 2111008
  11. Separate elements control DJ and VDJ rearrangement in a transgenic recombination substrate.
    EMBO J. 1990 Jan;9(1):117-25 PMID: 2153073
  12. Developmentally controlled and tissue-specific expression of unrearranged VH gene segments.
    Cell. 1985 Feb;40(2):271-81 PMID: 2578321
  13. A developmental-specific factor binds to suppressor sites flanking the immunoglobulin heavy-chain enhancer.
    Genes Dev. 1989 Aug;3(8):1255-66 PMID: 2792763
  14. Chromosomal loop anchorage of the kappa immunoglobulin gene occurs next to the enhancer in a region containing topoisomerase II sites.
    Cell. 1986 Jan 31;44(2):273-82 PMID: 3002631
  15. The immunoglobulin heavy-chain B-lymphocyte enhancer efficiently stimulates transcription in non-lymphoid cells.
    EMBO J. 1986 Mar;5(3):553-60 PMID: 3011412
  16. Synergism between immunoglobulin enhancers and promoters.
    Nature. 1986 Jul 24-30;322(6077):383-5 PMID: 3016550
  17. The enhancer of the immunoglobulin heavy chain locus is flanked by presumptive chromosomal loop anchorage elements.
    J Biol Chem. 1987 Apr 15;262(11):5394-7 PMID: 3031052
  18. Functional analysis of the murine IgH enhancer: evidence for negative control of cell-type specificity.
    Nucleic Acids Res. 1986 Oct 24;14(20):8209-21 PMID: 3095795
  19. Matrix attachment regions are positioned near replication initiation sites, genes, and an interamplicon junction in the amplified dihydrofolate reductase domain of Chinese hamster ovary cells.
    Mol Cell Biol. 1988 Dec;8(12):5398-409 PMID: 3244360
  20. Independent immunoglobulin class-switch events occurring in a single myeloma cell line.
    Mol Cell Biol. 1985 Apr;5(4):856-68 PMID: 3921826
  21. Cell-type specificity of immunoglobulin gene expression is regulated by at least three DNA sequence elements.
    Cell. 1985 Jul;41(3):885-97 PMID: 3924411
  22. Deletion of a B-cell-specific enhancer affects transfected, but not endogenous, immunoglobulin heavy-chain gene expression.
    Proc Natl Acad Sci U S A. 1985 Aug;82(15):5088-92 PMID: 3927296
  23. Characterization of immunoglobulin enhancer deletions in murine plasmacytomas.
    EMBO J. 1985 Dec 30;4(13B):3689-93 PMID: 4092693
  24. Introduction of a mu immunoglobulin gene into the mouse germ line: specific expression in lymphoid cells and synthesis of functional antibody.
    Cell. 1984 Oct;38(3):647-58 PMID: 6091894
  25. Organization of the higher-order chromatin loop: specific DNA attachment sites on nuclear scaffold.
    Cell. 1984 Nov;39(1):223-32 PMID: 6091913
  26. Preferential utilization of the most JH-proximal VH gene segments in pre-B-cell lines.
    Nature. 1984 Oct 25-31;311(5988):727-33 PMID: 6092962
  27. Deletion of the IgH enhancer does not reduce immunoglobulin heavy chain production of a hybridoma IgD class switch variant.
    EMBO J. 1984 Nov;3(11):2473-6 PMID: 6096124
  28. A tissue-specific transcription enhancer element is located in the major intron of a rearranged immunoglobulin heavy chain gene.
    Cell. 1983 Jul;33(3):717-28 PMID: 6409417
  29. A lymphocyte-specific cellular enhancer is located downstream of the joining region in immunoglobulin heavy chain genes.
    Cell. 1983 Jul;33(3):729-40 PMID: 6409418
  30. Immunoglobulin heavy-chain class switching in a pre-B cell line is accompanied by DNA rearrangement.
    Nature. 1983 Nov 17-23;306(5940):243-6 PMID: 6417542
  31. Immunoglobulin heavy-chain expression and class switching in a murine leukaemia cell line.
    Nature. 1982 Mar 25;296(5855):325-31 PMID: 6801527
  32. Targeted deletion of 5'HS2 of the murine beta-globin LCR reveals that it is not essential for proper regulation of the beta-globin locus.
    Genes Dev. 1995 Sep 15;9(18):2203-13 PMID: 7557375
  33. Combinatorial regulation of transcription II: The immunoglobulin mu heavy chain gene.
    Immunity. 1995 May;2(5):427-38 PMID: 7749979
  34. Differential activation of transcription versus recombination of transgenic T cell receptor beta variable region gene segments in B and T lineage cells.
    J Exp Med. 1994 Jul 1;180(1):261-72 PMID: 8006587
  35. Dependence of enhancer-mediated transcription of the immunoglobulin mu gene on nuclear matrix attachment regions.
    Science. 1994 Aug 26;265(5176):1221-5 PMID: 8066460
  36. A class switch control region at the 3' end of the immunoglobulin heavy chain locus.
    Cell. 1994 Jun 3;77(5):737-47 PMID: 8205622
  37. Mutations of the intronic IgH enhancer and its flanking sequences differentially affect accessibility of the JH locus.
    EMBO J. 1993 Dec;12(12):4635-45 PMID: 8223473
  38. SAR-dependent mobilization of histone H1 by HMG-I/Y in vitro: HMG-I/Y is enriched in H1-depleted chromatin.
    EMBO J. 1993 Aug;12(8):3237-47 PMID: 8344261
  39. The immunoglobulin mu enhancer core establishes local factor access in nuclear chromatin independent of transcriptional stimulation.
    Genes Dev. 1993 Oct;7(10):2016-32 PMID: 8406005
  40. A V(D)J recombinase-inducible B-cell line: role of transcriptional enhancer elements in directing V(D)J recombination.
    Mol Cell Biol. 1993 Oct;13(10):6223-30 PMID: 8413222
  41. Each hypersensitive site of the human beta-globin locus control region confers a different developmental pattern of expression on the globin genes.
    Genes Dev. 1993 Jan;7(1):106-13 PMID: 8422981
  42. Immunoglobulin heavy chain enhancer is located near or in an initiation zone of chromosomal DNA replication.
    Proc Natl Acad Sci U S A. 1993 Apr 15;90(8):3695-9 PMID: 8475117
  43. RAG-2-deficient blastocyst complementation: an assay of gene function in lymphocyte development.
    Proc Natl Acad Sci U S A. 1993 May 15;90(10):4528-32 PMID: 8506294
  44. V(D)J recombination in B cells is impaired but not blocked by targeted deletion of the immunoglobulin heavy chain intron enhancer.
    EMBO J. 1993 Jun;12(6):2321-7 PMID: 8508765
  45. Independent control of immunoglobulin switch recombination at individual switch regions evidenced through Cre-loxP-mediated gene targeting.
    Cell. 1993 Jun 18;73(6):1155-64 PMID: 8513499
  46. The 3' enhancer region determines the B/T specificity and pro-B/pre-B specificity of immunoglobulin V kappa-J kappa joining.
    Cell. 1995 Dec 29;83(7):1113-23 PMID: 8548799
  47. Immunoglobulin gene transcription ceases upon deletion of a distant enhancer.
    EMBO J. 1995 Dec 15;14(24):6229-38 PMID: 8557042
  48. The nuclear matrix: a structural milieu for genomic function.
    Int Rev Cytol. 1995;162A:1-65 PMID: 8575878
  49. Contributions of nuclear architecture to transcriptional control.
    Int Rev Cytol. 1995;162A:251-78 PMID: 8575882
  50. Chromatin domains and prediction of MAR sequences.
    Int Rev Cytol. 1995;162A:279-388 PMID: 8575883
  51. The architectural organization of nuclear metabolism.
    Int Rev Cytol. 1995;162A:67-123 PMID: 8575888
  52. Gene-targeted deletion and replacement mutations of the T-cell receptor beta-chain enhancer: the role of enhancer elements in controlling V(D)J recombination accessibility.
    Proc Natl Acad Sci U S A. 1996 Jul 23;93(15):7871-6 PMID: 8755569
  53. The Ig(kappa) enhancer influences the ratio of Ig(kappa) versus Ig(lambda) B lymphocytes.
    Immunity. 1996 Sep;5(3):241-52 PMID: 8808679
  54. Scaffold/matrix-attached regions: topological switches with multiple regulatory functions.
    Crit Rev Eukaryot Gene Expr. 1996;6(2-3):115-38 PMID: 8855385
  55. Extension of chromatin accessibility by nuclear matrix attachment regions.
    Nature. 1997 Jan 16;385(6613):269-72 PMID: 9000077
  56. The matrix attachment region-binding protein SATB1 participates in negative regulation of tissue-specific gene expression.
    Mol Cell Biol. 1997 Sep;17(9):5275-87 PMID: 9271405
  57. A DNA-binding element for a steroid receptor-binding factor is flanked by dual nuclear matrix DNA attachment sites in the c-myc gene promoter.
    J Biol Chem. 1997 Sep 26;272(39):24657-65 PMID: 9305935
  58. Murine and human 3'IgH regulatory sequences.
    Curr Top Microbiol Immunol. 1997;224:73-80 PMID: 9308230
  59. A thymocyte factor SATB1 suppresses transcription of stably integrated matrix-attachment region-linked reporter genes.
    Biochemistry. 1997 Oct 7;36(40):12005-10 PMID: 9340009
  60. Repeat-induced gene silencing in mammals.
    Nat Genet. 1998 Jan;18(1):56-9 PMID: 9425901
  61. Biochemical and functional analyses of chromatin changes at the TCR-beta gene locus during CD4-CD8- to CD4+CD8+ thymocyte differentiation.
    J Immunol. 1998 Feb 1;160(3):1256-67 PMID: 9570542
  62. Reevaluation of 3'Ekappa function in stage- and lineage-specific rearrangement and somatic hypermutation.
    Immunity. 1998 Jun;8(6):743-50 PMID: 9655488
  63. Deletion of the IgH intronic enhancer and associated matrix-attachment regions decreases, but does not abolish, class switching at the mu locus.
    Int Immunol. 1998 Jun;10(6):799-806 PMID: 9678761
  64. Class switching in B cells lacking 3' immunoglobulin heavy chain enhancers.
    J Exp Med. 1998 Oct 19;188(8):1421-31 PMID: 9782119
  65. A nuclear matrix attachment region upstream of the T cell receptor beta gene enhancer binds Cux/CDP and SATB1 and modulates enhancer-dependent reporter gene expression but not endogenous gene expression.
    J Biol Chem. 1998 Nov 6;273(45):29838-46 PMID: 9792700
Article Info
Journal
Proceedings of the National Academy of Sciences of the United States of America
Abbr.
Proc Natl Acad Sci U S A
ISSN
0027-8424
Published
1999-02-16
Pages
1526-31
Language
English
Region
United States
NLM ID
7505876
PMCID
PMC15504
Subset
IM
Grants
PHS HHS · A.I.01297-01 · United States
PHS HHS · A.I.20047 · United States
PHS HHS · A.I.35714 · United States
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com