Home LiteratureArticle Details
PMID: 9707586 Published · ppublish English Journal Article

Clustering of non-major histocompatibility complex susceptibility candidate loci in human autoimmune diseases.

Becker KG, Simon RM, Bailey-Wilson JE, Freidlin B, Biddison WE, McFarland HF, Trent JM

Abstract

Human autoimmune diseases are thought to develop through a complex combination of genetic and environmental factors. Genome-wide linkage searches of autoimmune and inflammatory/immune disorders have identified a large number of non-major histocompatibility complex loci that collectively contribute to disease susceptibility. A comparison was made of the linkage results from 23 published autoimmune or immune-mediated disease genome-wide scans. Human diseases included multiple sclerosis, Crohn's disease, familial psoriasis, asthma, and type-I diabetes (IDDM). Experimental animal disease studies included murine experimental autoimmune encephalomyelitis, rat inflammatory arthritis, rat and murine IDDM, histamine sensitization, immunity to exogenous antigens, and murine lupus (systemic lupus erythematosus; SLE). A majority (approximately 65%) of the human positive linkages map nonrandomly into 18 distinct clusters. Overlapping of susceptibility loci occurs between different human immune diseases and by comparing conserved regions with experimental autoimmune/immune disease models. This nonrandom clustering supports a hypothesis that, in some cases, clinically distinct autoimmune diseases may be controlled by a common set of susceptibility genes.

MeSH Terms
Animals Asthma/genetics Autoimmune Diseases/genetics Chromosome Mapping Chromosomes, Human/genetics Crohn Disease/genetics Diabetes Mellitus, Type 1/genetics Disease Models, Animal Female Genetic Linkage Genetic Markers Humans Male Mice Multigene Family Multiple Sclerosis/genetics Psoriasis/genetics Rats
Chemicals
Genetic Markers
Authors & Affiliations
7 authors, click to expand affiliations / ORCID
Becker K G
Cancer Genetics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA. kbecker@nhgri.nih.gov
Simon R M
Bailey-Wilson J E
Freidlin B
Biddison W E
McFarland H F
Trent J M
References (63)
63 references, click to expand
  1. Hereditary deficiency of OKT4-positive cells: studies for mode of inheritance and lymphocyte functions.
    Immunology. 1984 Dec;53(4):643-9 PMID: 6209207
  2. Analysis of a sequenced cDNA library from multiple sclerosis lesions.
    J Neuroimmunol. 1997 Jul;77(1):27-38 PMID: 9209265
  3. Evidence that autoimmunity in man is a Mendelian dominant trait.
    Am J Hum Genet. 1986 Nov;39(5):584-602 PMID: 3098096
  4. Regional assignment of five genes on human chromosome 19.
    Chromosoma. 1987;95(1):8-12 PMID: 3034518
  5. Hereditary angioedema and thyroid autoimmunity.
    J Clin Pathol. 1987 May;40(5):518-23 PMID: 3584502
  6. The human U1-70K snRNP protein: cDNA cloning, chromosomal localization, expression, alternative splicing and RNA-binding.
    Nucleic Acids Res. 1987 Dec 23;15(24):10373-91 PMID: 2447561
  7. The poliovirus sensitivity (PVS) gene is on chromosome 19q12----q13.2.
    Genomics. 1988 Aug;3(2):156-60 PMID: 2852161
  8. Linkage between immunoglobulin E responses underlying asthma and rhinitis and chromosome 11q.
    Lancet. 1989 Jun 10;1(8650):1292-5 PMID: 2566826
  9. The world of insulin-dependent diabetes mellitus: what international epidemiologic studies reveal about the etiology and natural history of IDDM.
    Diabetes Metab Rev. 1989 Nov;5(7):571-8 PMID: 2689120
  10. Growth retardation and immunodeficiency in a patient with mutations in the DNA ligase I gene.
    Lancet. 1992 Jun 20;339(8808):1508-9 PMID: 1351188
  11. A new platelet alloantigen, Tua, on glycoprotein IIIa associated with neonatal alloimmune thrombocytopenia in two families.
    Br J Haematol. 1993 Feb;83(2):306-10 PMID: 8457479
  12. Locus controlling Bordetella pertussis-induced histamine sensitization (Bphs), an autoimmune disease-susceptibility gene, maps distal to T-cell receptor beta-chain gene on mouse chromosome 6.
    Proc Natl Acad Sci U S A. 1993 Apr 15;90(8):3700-4 PMID: 8475118
  13. Genetic dissection of autoimmune type I diabetes in the BB rat.
    Nat Genet. 1992 Sep;2(1):56-60 PMID: 1303251
  14. Polygenic control of autoimmune diabetes in nonobese diabetic mice.
    Nat Genet. 1993 Aug;4(4):404-9 PMID: 8401590
  15. Epitope mapping of type VII collagen. Identification of discrete peptide sequences recognized by sera from patients with acquired epidermolysis bullosa.
    J Clin Invest. 1993 Oct;92(4):1831-9 PMID: 7691888
  16. Neonatal hemochromatosis associated with maternal autoantibodies against Ro/SS-A and La/SS-B ribonucleoproteins.
    Am J Dis Child. 1993 Oct;147(10):1072-5 PMID: 8213678
  17. Is juvenile diabetes a viral disease?
    Ann Med. 1993 Dec;25(6):569-74 PMID: 8292308
  18. Gene for familial psoriasis susceptibility mapped to the distal end of human chromosome 17q.
    Science. 1994 May 20;264(5162):1141-5 PMID: 8178173
  19. Genomic scan for genes predisposing to schizophrenia.
    Am J Med Genet. 1994 Mar 15;54(1):59-71 PMID: 7909992
  20. Human genetics. From the simple to the complex.
    Nature. 1994 Sep 8;371(6493):104-5 PMID: 8072538
  21. A genome-wide search for human type 1 diabetes susceptibility genes.
    Nature. 1994 Sep 8;371(6493):130-6 PMID: 8072542
  22. Genetic mapping of a susceptibility locus for insulin-dependent diabetes mellitus on chromosome 11q.
    Nature. 1994 Sep 8;371(6493):161-4 PMID: 8072544
  23. Possible association of CD3 and CD4 polymorphisms with insulin-dependent diabetes mellitus (IDDM).
    Clin Exp Immunol. 1994 Sep;97(3):517-21 PMID: 8082309
  24. Lupus susceptibility loci in New Zealand mice.
    Proc Natl Acad Sci U S A. 1994 Oct 11;91(21):10168-72 PMID: 7937857
  25. A locus on chromosome 15q26 (IDDM3) produces susceptibility to insulin-dependent diabetes mellitus.
    Nat Genet. 1994 Oct;8(2):189-94 PMID: 7842018
  26. A diabetes-associated T-cell autoantigen maps to a telomeric locus on mouse chromosome 6.
    Proc Natl Acad Sci U S A. 1995 Feb 28;92(5):1386-90 PMID: 7877988
  27. Polygenic control of susceptibility to murine systemic lupus erythematosus.
    Immunity. 1994 Jun;1(3):219-29 PMID: 7889410
  28. The basis of autoimmunity: Part II. Genetic predisposition.
    Immunol Today. 1995 Mar;16(3):150-9 PMID: 7718089
  29. Multiple loci govern the bone marrow-derived immunoregulatory mechanism controlling dominant resistance to autoimmune orchitis.
    Proc Natl Acad Sci U S A. 1995 Jun 6;92(12):5684-8 PMID: 7777570
  30. Congenic mapping of the insulin-dependent diabetes (Idd) gene, Idd10, localizes two genes mediating the Idd10 effect and eliminates the candidate Fcgr1.
    J Immunol. 1997 Aug 15;159(4):1835-43 PMID: 9257847
  31. Persistent infection with Theiler's virus leads to CNS autoimmunity via epitope spreading.
    Nat Med. 1997 Oct;3(10):1133-6 PMID: 9334726
  32. Linkage and association between insulin-dependent diabetes mellitus (IDDM) susceptibility and markers near the glucokinase gene on chromosome 7.
    Nat Genet. 1995 Jun;10(2):240-2 PMID: 7663523
  33. Identification of murine loci associated with susceptibility to chronic experimental autoimmune encephalomyelitis.
    Nat Genet. 1995 Jul;10(3):313-7 PMID: 7545492
  34. Genetic analysis of experimental allergic encephalomyelitis in mice.
    J Immunol. 1995 Oct 15;155(8):4046-51 PMID: 7561115
  35. Genetic analysis of type 1 diabetes using whole genome approaches.
    Proc Natl Acad Sci U S A. 1995 Sep 12;92(19):8560-5 PMID: 7567975
  36. Bax-deficient mice with lymphoid hyperplasia and male germ cell death.
    Science. 1995 Oct 6;270(5233):96-9 PMID: 7569956
  37. Schizophrenia: a genome scan targets chromosomes 3p and 8p as potential sites of susceptibility genes.
    Am J Med Genet. 1995 Jun 19;60(3):252-60 PMID: 7573181
  38. Genetic dissection of complex traits: guidelines for interpreting and reporting linkage results.
    Nat Genet. 1995 Nov;11(3):241-7 PMID: 7581446
  39. Mapping of a susceptibility locus for Crohn's disease on chromosome 16.
    Nature. 1996 Feb 29;379(6568):821-3 PMID: 8587604
  40. Genetic analysis of autoimmune disease.
    Cell. 1996 May 3;85(3):311-8 PMID: 8616887
  41. A genome-wide search for chromosomal loci linked to bipolar affective disorder in the Old Order Amish.
    Nat Genet. 1996 Apr;12(4):431-5 PMID: 8630500
  42. A genome-wide search for human non-insulin-dependent (type 2) diabetes genes reveals a major susceptibility locus on chromosome 2.
    Nat Genet. 1996 Jun;13(2):161-6 PMID: 8640221
  43. A genome screen in multiple sclerosis reveals susceptibility loci on chromosome 6p21 and 17q22.
    Nat Genet. 1996 Aug;13(4):464-8 PMID: 8696343
  44. A complete genomic screen for multiple sclerosis underscores a role for the major histocompatability complex. The Multiple Sclerosis Genetics Group.
    Nat Genet. 1996 Aug;13(4):469-71 PMID: 8696344
  45. A full genome search in multiple sclerosis.
    Nat Genet. 1996 Aug;13(4):472-6 PMID: 8696345
  46. A putative vulnerability locus to multiple sclerosis maps to 5p14-p12 in a region syntenic to the murine locus Eae2.
    Nat Genet. 1996 Aug;13(4):477-80 PMID: 8696346
  47. A genome scan localizes five non-MHC loci controlling collagen-induced arthritis in rats.
    Nat Genet. 1996 Sep;14(1):82-5 PMID: 8782824
  48. Interval mapping of quantitative trait loci controlling humoral immunity to exogenous antigens: evidence that non-MHC immune response genes may also influence susceptibility to autoimmunity.
    J Immunol. 1996 Sep 15;157(6):2498-505 PMID: 8805650
  49. A genome-wide search for quantitative trait loci underlying asthma.
    Nature. 1996 Sep 19;383(6597):247-50 PMID: 8805698
  50. The pathogenesis of postinfectious myocarditis.
    Clin Immunol Immunopathol. 1996 Sep;80(3 Pt 2):S92-9 PMID: 8811068
  51. Two stage genome-wide search in inflammatory bowel disease provides evidence for susceptibility loci on chromosomes 3, 7 and 12.
    Nat Genet. 1996 Oct;14(2):199-202 PMID: 8841195
  52. Evidence that a locus for familial psoriasis maps to chromosome 4q.
    Nat Genet. 1996 Oct;14(2):231-3 PMID: 8841203
  53. A gene map of the human genome.
    Science. 1996 Oct 25;274(5287):540-6 PMID: 8849440
  54. A follow-up report of a genome search for affective disorder predisposition loci in the Old Order Amish.
    Am J Hum Genet. 1996 Dec;59(6):1343-62 PMID: 8940281
  55. A metric map of humans: 23,500 loci in 850 bands.
    Proc Natl Acad Sci U S A. 1996 Dec 10;93(25):14771-5 PMID: 8962130
  56. Genetic determinants of viral susceptibility.
    Birth Defects Orig Artic Ser. 1978;14(6A):1-7 PMID: 365259
  57. Familial deficiency of two subunits of the first component of complement. C1r and C1s associated with a lupus erythematosus-like disease.
    Arthritis Rheum. 1978 Nov-Dec;21(8):958-67 PMID: 737019
  58. Control of mouse hepatitis virus replication in macrophages by a recessive gene on chromosome 7.
    J Immunol. 1984 Jul;133(1):428-32 PMID: 6327825
  59. A major quantitative trait locus determining serum leptin levels and fat mass is located on human chromosome 2.
    Nat Genet. 1997 Mar;15(3):273-6 PMID: 9054940
  60. Localization of the gene for familial primary pulmonary hypertension to chromosome 2q31-32.
    Nat Genet. 1997 Mar;15(3):277-80 PMID: 9054941
  61. Autoimmune diseases: tracing the shared threads.
    Hosp Pract (1995). 1997 Apr 15;32(4):147-54 PMID: 9109812
  62. Serial backcross mapping of multiple loci associated with resistance to Leishmania major in mice.
    Immunity. 1997 May;6(5):551-7 PMID: 9175833
  63. Systemic lupus erythematosus with deficiency of the T4 epitope on T helper/inducer cells.
    N Engl J Med. 1985 Jun 27;312(26):1671-8 PMID: 2582253
Article Info
Journal
Proceedings of the National Academy of Sciences of the United States of America
Abbr.
Proc Natl Acad Sci U S A
ISSN
0027-8424
Published
1998-08-18
Pages
9979-84
Language
English
Region
United States
NLM ID
7505876
PMCID
PMC21447
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com