Home LiteratureArticle Details
PMID: 9291965 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Review

Physical mapping of the rice genome with BACs.

Plant molecular biology ·Vol. 35 ·No. 1-2 ·1997-09-00 ·Pages 115-27

Zhang HB, Wing RA

Abstract

The development of genetics in this century has been catapulted forward by several milestones: rediscovery of Mendel's laws, determination of DNA as the genetic material, discovery of the double-helix structure of DNA and its implications for genetic behavior, and most recently, analysis of restriction fragment length polymorphisms (RFLPs). Each of these milestones has generated a huge wave of progress in genetics. Consequently, our understanding of organismal genetics now extends from phenotypes to their molecular genetic basis. It is now clear that the next wave of progress in genetics will hinge on genome molecular physical mapping, since a genome physical map will provide an invaluable, readily accessible system for many detailed genetic studies and isolation of many genes of economic or biological importance. Recent development of large-DNA fragment (> 100 kb) manipulation and cloning technologies, such as pulsed-field gel electrophoresis (PFGE), and yeast artificial chromosome (YAC) and bacterial artificial chromosome (BAC) cloning, has provided the powerful tools needed to generate molecular physical maps for higher-organism genomes. This chapter will discuss (1) an ideal physical map of plant genome and its applications in plant genetic and biological studies, (2) reviews on physical mapping of the genomes of Caenorhabditis elegans, Arabidopsis thaliana, and man, (3) large-insert DNA libraries: cosmid, YAC and BAC, and genome physical mapping, (4) physical mapping of the rice genome with BACs, and (5) perspectives on the physical mapping of the rice genome with BACs.

MeSH Terms
Animals Chromosome Mapping/methods,trends Chromosomes, Bacterial Genome, Plant Humans Oryza/genetics
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Zhang H B
Department of Soil and Crop Sciences, Texas A&M University, College Station 77843-2123, USA.
Wing R A
References (43)
43 references, click to expand
  1. An improved method of partially digesting plant megabase DNA suitable for YAC cloning: application to the construction of a 5.5 genome equivalent YAC library of tomato.
    Plant J. 1996 Jan;9(1):125-33 PMID: 8580969
  2. Map-based cloning of a gene controlling omega-3 fatty acid desaturation in Arabidopsis.
    Science. 1992 Nov 20;258(5086):1353-5 PMID: 1455229
  3. Toward a physical map of the genome of the nematode Caenorhabditis elegans.
    Proc Natl Acad Sci U S A. 1986 Oct;83(20):7821-5 PMID: 16593771
  4. Cloning and stable maintenance of 300-kilobase-pair fragments of human DNA in Escherichia coli using an F-factor-based vector.
    Proc Natl Acad Sci U S A. 1992 Sep 15;89(18):8794-7 PMID: 1528894
  5. Construction and characterization of a yeast artificial chromosome library of Arabidopsis which is suitable for chromosome walking.
    Mol Gen Genet. 1991 May;226(3):484-90 PMID: 1674816
  6. Isolation of single-copy-sequence clones from a yeast artificial chromosome library of randomly-sheared Arabidopsis thaliana DNA.
    Plant Mol Biol. 1990 Apr;14(4):561-8 PMID: 2102834
  7. Genome linking with yeast artificial chromosomes.
    Nature. 1988 Sep 8;335(6186):184-6 PMID: 3045566
  8. Construction of a mouse yeast artificial chromosome library in a recombination-deficient strain of yeast.
    Nat Genet. 1992 May;1(2):132-6 PMID: 1302006
  9. Physical map and organization of Arabidopsis thaliana chromosome 4.
    Science. 1995 Oct 20;270(5235):480-3 PMID: 7570002
  10. A second-generation YAC contig map of human chromosome 3.
    Nature. 1995 Sep 28;377(6547 Suppl):299-319 PMID: 7566097
  11. A high-density YAC contig map of human chromosome 22.
    Nature. 1995 Sep 28;377(6547 Suppl):367-79 PMID: 7566101
  12. Saturated molecular map of the rice genome based on an interspecific backcross population.
    Genetics. 1994 Dec;138(4):1251-74 PMID: 7896104
  13. A 300 kilobase interval genetic map of rice including 883 expressed sequences.
    Nat Genet. 1994 Dec;8(4):365-72 PMID: 7894488
  14. Construction of a yeast artificial chromosome library of tomato and identification of cloned segments linked to two disease resistance loci.
    Mol Gen Genet. 1992 May;233(1-2):25-32 PMID: 1351245
  15. Arabidopsis ethylene-response gene ETR1: similarity of product to two-component regulators.
    Science. 1993 Oct 22;262(5133):539-44 PMID: 8211181
  16. Cloning of large segments of exogenous DNA into yeast by means of artificial chromosome vectors.
    Science. 1987 May 15;236(4803):806-12 PMID: 3033825
  17. Cosmids: a type of plasmid gene-cloning vector that is packageable in vitro in bacteriophage lambda heads.
    Proc Natl Acad Sci U S A. 1978 Sep;75(9):4242-6 PMID: 360212
  18. An integrated physical map of human chromosome 16.
    Nature. 1995 Sep 28;377(6547 Suppl):335-65 PMID: 7566100
  19. Construction of a barley (Hordeum vulgare L.) YAC library and isolation of a Hor1-specific clone.
    Mol Gen Genet. 1993 Aug;240(2):265-72 PMID: 8355658
  20. Construction and characterisation of a yeast artificial chromosome library containing two haploid Beta vulgaris L. genome equivalents.
    Gene. 1992 Nov 16;121(2):195-201 PMID: 1446818
  21. Map-based cloning in crop plants. Tomato as a model system: I. Genetic and physical mapping of jointless.
    Mol Gen Genet. 1994 Mar;242(6):681-8 PMID: 7908716
  22. Comparative linkage maps of the rice and maize genomes.
    Proc Natl Acad Sci U S A. 1993 Sep 1;90(17):7980-4 PMID: 8103599
  23. Fluorescent in situ hybridization of a bacterial artificial chromosome.
    Genome. 1995 Aug;38(4):646-51 PMID: 7672600
  24. A protein phosphatase 2C involved in ABA signal transduction in Arabidopsis thaliana.
    Science. 1994 Jun 3;264(5164):1452-5 PMID: 8197457
  25. Map-based cloning of a protein kinase gene conferring disease resistance in tomato.
    Science. 1993 Nov 26;262(5138):1432-6 PMID: 7902614
  26. Construction and characterization of a bacterial artificial chromosome library of Sorghum bicolor.
    Nucleic Acids Res. 1994 Nov 25;22(23):4922-31 PMID: 7800481
  27. Isolation of the Arabidopsis ABI3 gene by positional cloning.
    Plant Cell. 1992 Oct;4(10):1251-61 PMID: 1359917
  28. YACs and the C. elegans genome.
    Bioessays. 1991 Aug;13(8):413-7 PMID: 1953703
  29. Construction of a bovine genomic library of large yeast artificial chromosome clones.
    Genomics. 1993 Nov;18(2):270-6 PMID: 8288229
  30. Map-based cloning in crop plants: tomato as a model system II. Isolation and characterization of a set of overlapping yeast artificial chromosomes encompassing the jointless locus.
    Mol Gen Genet. 1994 Sep 28;244(6):613-21 PMID: 7969030
  31. The nematode Caenorhabditis elegans and its genome.
    Science. 1995 Oct 20;270(5235):410-4 PMID: 7569995
  32. Construction of a rice bacterial artificial chromosome library and identification of clones linked to the Xa-21 disease resistance locus.
    Plant J. 1995 Mar;7(3):525-33 PMID: 7757120
  33. Construction and characterisation of a yeast artificial chromosome library containing three haploid maize genome equivalents.
    Plant Mol Biol. 1992 May;19(2):299-308 PMID: 1623180
  34. Cereal genome evolution. Grasses, line up and form a circle.
    Curr Biol. 1995 Jul 1;5(7):737-9 PMID: 7583118
  35. Chromosome walking with YAC clones in Arabidopsis: isolation of 1700 kb of contiguous DNA on chromosome 5, including a 300 kb region containing the flowering-time gene CO.
    Mol Gen Genet. 1993 May;239(1-2):145-57 PMID: 8099710
  36. RPS2 of Arabidopsis thaliana: a leucine-rich repeat class of plant disease resistance genes.
    Science. 1994 Sep 23;265(5180):1856-60 PMID: 8091210
  37. Arabidopsis ABA response gene ABI1: features of a calcium-modulated protein phosphatase.
    Science. 1994 Jun 3;264(5164):1448-52 PMID: 7910981
  38. Role of SUPERMAN in maintaining Arabidopsis floral whorl boundaries.
    Nature. 1995 Nov 9;378(6553):199-203 PMID: 7477325
  39. Transformation of yeast spheroplasts without cell fusion.
    Anal Biochem. 1987 Jun;163(2):391-7 PMID: 3310730
  40. Homoeologous relationships of rice, wheat and maize chromosomes.
    Mol Gen Genet. 1993 Dec;241(5-6):483-90 PMID: 7903411
  41. Genome shortcut leads to problems.
    Science. 1993 Mar 19;259(5102):1684-7 PMID: 8456291
  42. The CIC library: a large insert YAC library for genome mapping in Arabidopsis thaliana.
    Plant J. 1995 Nov;8(5):763-70 PMID: 8528287
  43. A second-generation YAC contig map of human chromosome 12.
    Nature. 1995 Sep 28;377(6547 Suppl):321-33 PMID: 7566099
Article Info
Journal
Plant molecular biology
Abbr.
Plant Mol Biol
ISSN
0167-4412
Published
1997-09-00
Pages
115-27
Language
English
Region
Netherlands
NLM ID
9106343
Subset
IM
External Links
PubMed source View journal details
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com

Copyright © 2026.Genelibs Jinan Honghui Biotechnology Co., Ltd. 鲁ICP备20007159号-2