Abstract
Analysis of the function of a particular gene product typically involves determining the expression profile of the gene, the subcellular location of the protein, and the phenotype of a null strain lacking the protein. Conditional alleles of the gene are often created as an additional tool. We have developed a multifunctional, transposon-based system that simultaneously generates constructs for all the above analyses and is suitable for mutagenesis of any given Saccharomyces cerevisiae gene. Depending on the transposon used, the yeast gene is fused to a coding region for beta-galactosidase or green fluorescent protein. Gene expression can therefore be monitored by chemical or fluorescence assays. The transposons create insertion mutations in the target gene, allowing phenotypic analysis. The transposon can be reduced by cre-lox site-specific recombination to a smaller element that leaves an epitope tag inserted in the encoded protein. In addition to its utility for a variety of immunodetection purposes, the epitope tag element also has the potential to create conditional alleles of the target gene. We demonstrate these features of the transposons by mutagenesis of the SPA2, ARP100, SER1, and BDF1 genes.
MeSH Terms
DNA Transposable Elements
Epitopes
Fungal Proteins/physiology
Genes, Fungal
Genes, Reporter
Genomic Library
Green Fluorescent Proteins
Hemagglutinin Glycoproteins, Influenza Virus/immunology
Integrases
Luminescent Proteins/genetics
Molecular Sequence Data
Mutagenesis, Insertional/methods
Phenotype
Recombinant Fusion Proteins
Recombination, Genetic
Saccharomyces cerevisiae/genetics
Viral Proteins
beta-Galactosidase/genetics
Chemicals
DNA Transposable Elements
Epitopes
Fungal Proteins
Hemagglutinin Glycoproteins, Influenza Virus
Luminescent Proteins
Recombinant Fusion Proteins
Viral Proteins
Green Fluorescent Proteins
Cre recombinase
Integrases
beta-Galactosidase
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Ross-Macdonald P
Department of Biology, Yale University, New Haven, CT 06520-8103, USA.
Sheehan A
Roeder G S
Snyder M
References (25)
25 references, click to expand
-
Bacteriophage P1 site-specific recombination. II. Recombination between loxP and the bacterial chromosome.
J Mol Biol. 1981 Aug 25;150(4):487-507
PMID: 6276558
-
The SPA2 protein of yeast localizes to sites of cell growth.
J Cell Biol. 1989 Apr;108(4):1419-29
PMID: 2647769
-
In vitro mutagenesis and plasmid shuffling: from cloned gene to mutant yeast.
Methods Enzymol. 1991;194:302-18
PMID: 2005795
-
Shuttle mutagenesis: bacterial transposons for genetic manipulations in yeast.
Methods Enzymol. 1991;194:329-42
PMID: 1848645
-
Mutational analysis of CDC42Sc, a Saccharomyces cerevisiae gene that encodes a putative GTP-binding protein involved in the control of cell polarity.
Mol Cell Biol. 1991 Jul;11(7):3537-44
PMID: 1904541
-
A Tn3 derivative that can be used to make short in-frame insertions within genes.
Proc Natl Acad Sci U S A. 1991 Jun 15;88(12):5457-61
PMID: 1647034
-
Studies concerning the temporal and genetic control of cell polarity in Saccharomyces cerevisiae.
J Cell Biol. 1991 Aug;114(3):515-32
PMID: 1860883
-
A meiosis-specific protein kinase homolog required for chromosome synapsis and recombination.
Genes Dev. 1991 Dec;5(12B):2392-404
PMID: 1752435
-
Primary structure of the Aequorea victoria green-fluorescent protein.
Gene. 1992 Feb 15;111(2):229-33
PMID: 1347277
-
The Cln3-Cdc28 kinase complex of S. cerevisiae is regulated by proteolysis and phosphorylation.
EMBO J. 1992 May;11(5):1773-84
PMID: 1316273
-
A gene from Saccharomyces cerevisiae which codes for a protein with significant homology to the bacterial 3-phosphoserine aminotransferase.
Yeast. 1994 Mar;10(3):385-9
PMID: 8017107
-
Large-scale analysis of gene expression, protein localization, and gene disruption in Saccharomyces cerevisiae.
Genes Dev. 1994 May 1;8(9):1087-105
PMID: 7926789
-
Wavelength mutations and posttranslational autoxidation of green fluorescent protein.
Proc Natl Acad Sci U S A. 1994 Dec 20;91(26):12501-4
PMID: 7809066
-
The yeast BDF1 gene encodes a transcription factor involved in the expression of a broad class of genes including snRNAs.
Nucleic Acids Res. 1994 Dec 11;22(24):5332-40
PMID: 7816623
-
Bdf1, a yeast chromosomal protein required for sporulation.
Mol Cell Biol. 1995 Jul;15(7):3685-96
PMID: 7791775
-
Comparative genomics, genome cross-referencing and XREFdb.
Trends Genet. 1995 Sep;11(9):372-3
PMID: 7482790
-
Use of polymerase chain reaction epitope tagging for protein tagging in Saccharomyces cerevisiae.
Yeast. 1995 Oct;11(13):1265-74
PMID: 8553697
-
The identification of transposon-tagged mutations in essential genes that affect cell morphology in Saccharomyces cerevisiae.
Genetics. 1996 Jan;142(1):39-50
PMID: 8770583
-
Green fluorescent protein as a marker for gene expression and subcellular localization in budding yeast.
Yeast. 1996 Jun 30;12(8):773-86
PMID: 8813764
-
Beta-galactosidase gene fusions for analyzing gene expression in escherichia coli and yeast.
Methods Enzymol. 1983;100:293-308
PMID: 6312261
-
The structure of an antigenic determinant in a protein.
Cell. 1984 Jul;37(3):767-78
PMID: 6204768
-
Mutants of the gamma delta resolvase: a genetic analysis of the recombination function.
Cell. 1984 Sep;38(2):463-9
PMID: 6088082
-
Shuttle mutagenesis: a method of transposon mutagenesis for Saccharomyces cerevisiae.
Proc Natl Acad Sci U S A. 1986 Feb;83(3):735-9
PMID: 3003748
-
Functional expression of the cre-lox site-specific recombination system in the yeast Saccharomyces cerevisiae.
Mol Cell Biol. 1987 Jun;7(6):2087-96
PMID: 3037344
-
Purification of a RAS-responsive adenylyl cyclase complex from Saccharomyces cerevisiae by use of an epitope addition method.
Mol Cell Biol. 1988 May;8(5):2159-65
PMID: 2455217