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PMID: 8887556 Published · ppublish English Journal Article

Distinct activated and non-activated RNA polymerase II complexes in yeast.

The EMBO journal ·Vol. 15 ·No. 17 ·1996-09-02 ·Pages 4654-64

Akhtar A, Faye G, Bentley DL

Abstract

We used a transcriptional run-on assay in permeabilized yeast cells to study the distribution of RNA polymerase II (pol II) complexes before and after activation by Gal4. Polymerases were found engaged on the gene at the 5' end before activation, but only appeared at the 3' end after activation. Mutations of the pol II C-terminal domain (CTD), the CTD kinase Kin28 and the holoenzyme subunit Srb2 all inhibited the formation of 3' polymerases in response to activator. However, these mutations did not inhibit the establishment of polymerases at the 5' end. The differences between 3' and 5' ternary complexes suggest that they represent qualitatively distinct 'activated' and 'non-activated' forms of polymerase. The results implicate CTD phosphorylation in a switch from 'non-activated' transcription, which is confined to the 5' end, to an 'activated' mode that traverses the length of the gene.

MeSH Terms
DNA-Binding Proteins Enzyme Activation Fungal Proteins/metabolism Mutation RNA Polymerase II/genetics,metabolism Saccharomyces cerevisiae/enzymology Saccharomyces cerevisiae Proteins Transcription Factors Transcription, Genetic
Chemicals
DNA-Binding Proteins Fungal Proteins GAL4 protein, S cerevisiae Saccharomyces cerevisiae Proteins Transcription Factors RNA Polymerase II
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Akhtar A
Molecular Genetics of Differentiation Laboratory, Imperial Cancer Research Fund, London, UK.
Faye G
Bentley D L
References (69)
69 references, click to expand
  1. Genetic isolation of ADA2: a potential transcriptional adaptor required for function of certain acidic activation domains.
    Cell. 1992 Jul 24;70(2):251-65 PMID: 1638630
  2. Hold back of RNA polymerase II at the transcription start site mediates down-regulation of c-myc in vivo.
    EMBO J. 1992 Sep;11(9):3307-14 PMID: 1505520
  3. Involvement of the SIN4 global transcriptional regulator in the chromatin structure of Saccharomyces cerevisiae.
    Mol Cell Biol. 1992 Oct;12(10):4503-14 PMID: 1406639
  4. The block to transcriptional elongation within the human c-myc gene is determined in the promoter-proximal region.
    Genes Dev. 1992 Nov;6(11):2201-13 PMID: 1427080
  5. The human immunodeficiency virus type 1 long terminal repeat specifies two different transcription complexes, only one of which is regulated by Tat.
    J Virol. 1993 Apr;67(4):1752-60 PMID: 8445708
  6. Transcription initiation by RNA polymerase II in vitro. Properties of preinitiation, initiation, and elongation complexes.
    J Biol Chem. 1987 Jan 5;262(1):298-304 PMID: 2432061
  7. Eucaryotic RNA polymerase conditional mutant that rapidly ceases mRNA synthesis.
    Mol Cell Biol. 1987 May;7(5):1602-11 PMID: 3299050
  8. Functional redundancy and structural polymorphism in the large subunit of RNA polymerase II.
    Cell. 1987 Sep 11;50(6):909-15 PMID: 3304659
  9. Anti-termination of transcription within the long terminal repeat of HIV-1 by tat gene product.
    Nature. 1987 Dec 3-9;330(6147):489-93 PMID: 2825027
  10. Conserved arrangement of nested genes at the Drosophila Gart locus.
    Genetics. 1987 Dec;117(4):711-25 PMID: 3123310
  11. Structure of a split yeast gene: complete nucleotide sequence of the actin gene in Saccharomyces cerevisiae.
    Proc Natl Acad Sci U S A. 1980 May;77(5):2546-50 PMID: 6994099
  12. Yeast promoters and lacZ fusions designed to study expression of cloned genes in yeast.
    Methods Enzymol. 1983;101:181-91 PMID: 6310321
  13. Sequence of the Saccharomyces GAL region and its transcription in vivo.
    J Bacteriol. 1984 Apr;158(1):269-78 PMID: 6715281
  14. Each of three "TATA elements" specifies a subset of the transcription initiation sites at the CYC-1 promoter of Saccharomyces cerevisiae.
    Proc Natl Acad Sci U S A. 1985 Dec;82(24):8562-6 PMID: 3001709
  15. Saturation mutagenesis of the yeast his3 regulatory site: requirements for transcriptional induction and for binding by GCN4 activator protein.
    Science. 1986 Oct 24;234(4775):451-7 PMID: 3532321
  16. A model fungal gene regulatory mechanism: the GAL genes of Saccharomyces cerevisiae.
    Microbiol Rev. 1987 Dec;51(4):458-76 PMID: 2830478
  17. The RNA polymerase II molecule at the 5' end of the uninduced hsp70 gene of D. melanogaster is transcriptionally engaged.
    Cell. 1988 Sep 9;54(6):795-804 PMID: 3136931
  18. Mutations in RNA polymerase II enhance or suppress mutations in GAL4.
    Proc Natl Acad Sci U S A. 1989 Apr;86(8):2794-8 PMID: 2495535
  19. A novel genetic system to detect protein-protein interactions.
    Nature. 1989 Jul 20;340(6230):245-6 PMID: 2547163
  20. The transition of RNA polymerase II from initiation to elongation is associated with phosphorylation of the carboxyl-terminal domain of subunit IIa.
    J Biol Chem. 1989 Nov 25;264(33):19621-9 PMID: 2584185
  21. A multisubunit complex associated with the RNA polymerase II CTD and TATA-binding protein in yeast.
    Cell. 1993 Jul 2;73(7):1361-75 PMID: 8324825
  22. DNA melting on yeast RNA polymerase II promoters.
    Science. 1993 Aug 6;261(5122):759-62 PMID: 8342041
  23. RNA polymerases IIA and IIO have distinct roles during transcription from the TATA-less murine dihydrofolate reductase promoter.
    J Biol Chem. 1993 Nov 25;268(33):25033-40 PMID: 8227067
  24. The kin28 protein kinase is associated with a cyclin in Saccharomyces cerevisiae.
    J Mol Biol. 1993 Nov 20;234(2):307-10 PMID: 8230216
  25. Locus-specific variation in phosphorylation state of RNA polymerase II in vivo: correlations with gene activity and transcript processing.
    Genes Dev. 1993 Dec;7(12A):2329-44 PMID: 8253380
  26. An RNA polymerase II holoenzyme responsive to activators.
    Nature. 1994 Mar 31;368(6470):466-9 PMID: 8133894
  27. Transcriptional activation: a complex puzzle with few easy pieces.
    Cell. 1994 Apr 8;77(1):5-8 PMID: 8156597
  28. Effects of activation-defective TBP mutations on transcription initiation in yeast.
    Nature. 1994 May 19;369(6477):252-5 PMID: 8183347
  29. A multiprotein mediator of transcriptional activation and its interaction with the C-terminal repeat domain of RNA polymerase II.
    Cell. 1994 May 20;77(4):599-608 PMID: 8187178
  30. Construction of an improved host strain for two hybrid screening.
    Nucleic Acids Res. 1994 Apr 25;22(8):1502-3 PMID: 8190644
  31. Transcriptional elongation by RNA polymerase II is stimulated by transactivators.
    Cell. 1994 Jun 3;77(5):749-59 PMID: 8205623
  32. Phosphorylation of RNA polymerase II C-terminal domain and transcriptional elongation.
    Nature. 1994 Jul 7;370(6484):75-7 PMID: 8015613
  33. Increased recruitment of TATA-binding protein to the promoter by transcriptional activation domains in vivo.
    Science. 1994 Oct 14;266(5183):280-2 PMID: 7939664
  34. Binding of TFIID to the CYC1 TATA boxes in yeast occurs independently of upstream activating sequences.
    Proc Natl Acad Sci U S A. 1994 Dec 6;91(25):11909-13 PMID: 7991556
  35. Relationship of CDK-activating kinase and RNA polymerase II CTD kinase TFIIH/TFIIK.
    Cell. 1994 Dec 16;79(6):1103-9 PMID: 8001136
  36. The multifunctional TFIIH complex and transcriptional control.
    Trends Biochem Sci. 1994 Nov;19(11):504-8 PMID: 7855896
  37. A kinase-cyclin pair in the RNA polymerase II holoenzyme.
    Nature. 1995 Mar 9;374(6518):193-6 PMID: 7877695
  38. Promoter-proximal pausing of RNA polymerase II defines a general rate-limiting step after transcription initiation.
    Genes Dev. 1995 Mar 1;9(5):559-72 PMID: 7698646
  39. RNA polymerase II C-terminal domain required for enhancer-driven transcription.
    Nature. 1995 Apr 13;374(6523):660-2 PMID: 7715709
  40. TBP mutants defective in activated transcription in vivo.
    EMBO J. 1995 Apr 3;14(7):1490-7 PMID: 7729424
  41. Contact with a component of the polymerase II holoenzyme suffices for gene activation.
    Cell. 1995 May 5;81(3):359-68 PMID: 7736588
  42. KIN28 encodes a C-terminal domain kinase that controls mRNA transcription in Saccharomyces cerevisiae but lacks cyclin-dependent kinase-activating kinase (CAK) activity.
    Mol Cell Biol. 1995 Jun;15(6):2983-92 PMID: 7760796
  43. A kinase-deficient transcription factor TFIIH is functional in basal and activated transcription.
    Proc Natl Acad Sci U S A. 1995 May 23;92(11):5174-8 PMID: 7761469
  44. Association of an activator with an RNA polymerase II holoenzyme.
    Genes Dev. 1995 Apr 15;9(8):897-910 PMID: 7774808
  45. The KIN28 gene is required both for RNA polymerase II mediated transcription and phosphorylation of the Rpb1p CTD.
    J Mol Biol. 1995 Jun 9;249(3):535-44 PMID: 7783209
  46. The TBP-TFIIA interaction in the response to acidic activators in vivo.
    Science. 1995 Jul 7;269(5220):75-8 PMID: 7604282
  47. Regulation of transcriptional elongation by RNA polymerase II.
    Curr Opin Genet Dev. 1995 Apr;5(2):210-6 PMID: 7613091
  48. Recruiting TATA-binding protein to a promoter: transcriptional activation without an upstream activator.
    Mol Cell Biol. 1995 Oct;15(10):5757-61 PMID: 7565728
  49. Correlation of two-hybrid affinity data with in vitro measurements.
    Mol Cell Biol. 1995 Oct;15(10):5820-9 PMID: 7565735
  50. The transcriptional elongation inhibitor 5,6-dichloro-1-beta-D-ribofuranosylbenzimidazole inhibits transcription factor IIH-associated protein kinase.
    J Biol Chem. 1995 Oct 13;270(41):23922-5 PMID: 7592583
  51. Common themes in assembly and function of eukaryotic transcription complexes.
    Annu Rev Biochem. 1995;64:533-61 PMID: 7574492
  52. Amino acid substitutions in the structured domains of histones H3 and H4 partially relieve the requirement of the yeast SWI/SNF complex for transcription.
    Genes Dev. 1995 Nov 15;9(22):2770-9 PMID: 7590252
  53. Construction and analysis of yeast RNA polymerase II CTD deletion and substitution mutations.
    Genetics. 1995 Aug;140(4):1223-33 PMID: 7498765
  54. Three functional classes of transcriptional activation domain.
    Mol Cell Biol. 1996 May;16(5):2044-55 PMID: 8628270
  55. A three-step pathway of transcription initiation leading to promoter clearance at an activation RNA polymerase II promoter.
    Mol Cell Biol. 1996 Apr;16(4):1614-21 PMID: 8657136
  56. KIN28, a yeast split gene coding for a putative protein kinase homologous to CDC28.
    EMBO J. 1986 Oct;5(10):2697-701 PMID: 3536482
  57. mRNA transcription in nuclei isolated from Saccharomyces cerevisiae.
    Mol Cell Biol. 1986 May;6(5):1633-9 PMID: 3537708
  58. An RNA polymerase I enhancer in Saccharomyces cerevisiae.
    Mol Cell Biol. 1986 Jun;6(6):2089-97 PMID: 3537713
  59. Functional distinctions between yeast TATA elements.
    Mol Cell Biol. 1989 Dec;9(12):5298-304 PMID: 2685558
  60. Intragenic and extragenic suppressors of mutations in the heptapeptide repeat domain of Saccharomyces cerevisiae RNA polymerase II.
    Genetics. 1989 Dec;123(4):715-24 PMID: 2693207
  61. RNA polymerase II C-terminal repeat influences response to transcriptional enhancer signals.
    Nature. 1990 Oct 4;347(6292):491-4 PMID: 2215664
  62. Postinitiation transcriptional control in Drosophila melanogaster.
    Mol Cell Biol. 1990 Nov;10(11):6041-5 PMID: 2172790
  63. Synergy between HIV-1 Tat and adenovirus E1A is principally due to stabilization of transcriptional elongation.
    Genes Dev. 1990 Dec;4(12B):2397-408 PMID: 2149119
  64. A functional interaction between the C-terminal domain of RNA polymerase II and the negative regulator SIN1.
    Cell. 1991 Mar 22;64(6):1135-43 PMID: 2004420
  65. Transcription on nucleosomal templates by RNA polymerase II in vitro: inhibition of elongation with enhancement of sequence-specific pausing.
    Genes Dev. 1991 Apr;5(4):683-96 PMID: 2010092
  66. The nonphosphorylated form of RNA polymerase II preferentially associates with the preinitiation complex.
    Proc Natl Acad Sci U S A. 1991 Nov 15;88(22):10004-8 PMID: 1946417
  67. Distinct modes of transcription read through or terminate at the c-myc attenuator.
    EMBO J. 1992 Mar;11(3):1085-93 PMID: 1372247
  68. Specific interaction between the nonphosphorylated form of RNA polymerase II and the TATA-binding protein.
    Cell. 1992 May 29;69(5):871-81 PMID: 1591781
  69. A novel transcription factor reveals a functional link between the RNA polymerase II CTD and TFIID.
    Cell. 1992 May 29;69(5):883-94 PMID: 1591782
Article Info
Journal
The EMBO journal
Abbr.
EMBO J
ISSN
0261-4189
Published
1996-09-02
Pages
4654-64
Language
English
Region
England
NLM ID
8208664
PMCID
PMC452197
Subset
IM
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