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PMID: 8846904 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, P.H.S.

Centromere-linkage analysis and consolidation of the zebrafish genetic map.

Genetics ·Vol. 142 ·No. 4 ·1996-04-00 ·Pages 1277-88

Johnson SL, Gates MA, Johnson M, Talbot WS, Horne S, Baik K, Rude S, Wong JR, Postlethwait JH

Abstract

The ease of isolating mutations in zebrafish will contribute to an understanding of a variety of processes common to all vertebrates. To facilitate genetic analysis of such mutations, we have identified DNA polymorphisms closely linked to each of the 25 centromeres of zebrafish, placed centromeres on the linkage map, increased the number of mapped PCR-based markers to 652, and consolidated the number of linkage groups to the number of chromosomes. This work makes possible centromere-linkage analysis, a novel, rapid method to assign mutations to a specific linkage group using half-tetrads.

MeSH Terms
Animals Base Sequence Centromere Chromosome Mapping DNA Primers Genetic Linkage Genetic Markers Molecular Sequence Data Polymorphism, Genetic Zebrafish/genetics
Chemicals
DNA Primers Genetic Markers
Authors & Affiliations
9 authors, click to expand affiliations / ORCID
Johnson S L
Institute of Neuroscience, University of Oregon, Eugene 97403, USA. sjohnson@uoneuro.uoregon.edu
Gates M A
Johnson M
Talbot W S
Horne S
Baik K
Rude S
Wong J R
Postlethwait J H
References (35)
35 references, click to expand
  1. Structure of the zebrafish snail1 gene and its expression in wild-type, spadetail and no tail mutant embryos.
    Development. 1993 Dec;119(4):1203-15 PMID: 8306883
  2. Developmental biology. Catch of the decade.
    Nature. 1994 May 5;369(6475):19-20 PMID: 8164733
  3. Segregation analyses and gene-centromere distances in zebrafish.
    Genetics. 1986 Feb;112(2):311-9 PMID: 3455686
  4. Chicken genome mapping: a new era in avian genetics.
    Trends Genet. 1995 May;11(5):190-4 PMID: 7785078
  5. Application of the ovarian teratoma mapping method in the mouse.
    Genetics. 1983 Apr;103(4):797-812 PMID: 6852526
  6. Microsatellite-centromere mapping in the zebrafish (Danio rerio).
    Genomics. 1995 Nov 20;30(2):337-41 PMID: 8586435
  7. Identification of polymorphic simple sequence repeats in the genome of the zebrafish.
    Genomics. 1992 Sep;14(1):200-2 PMID: 1427829
  8. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers.
    Nucleic Acids Res. 1990 Nov 25;18(22):6531-5 PMID: 1979162
  9. MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations.
    Genomics. 1987 Oct;1(2):174-81 PMID: 3692487
  10. Chromosomes of the zebra fish. A model for cytogenetic, embryologic, and ecologic study.
    J Hered. 1968 Nov-Dec;59(6):382-4 PMID: 5713937
  11. Efficient recovery of ENU-induced mutations from the zebrafish germline.
    Genetics. 1994 Apr;136(4):1401-20 PMID: 8013916
  12. A homeobox gene essential for zebrafish notochord development.
    Nature. 1995 Nov 9;378(6553):150-7 PMID: 7477317
  13. A genetic linkage map of the laboratory rat, Rattus norvegicus.
    Nat Genet. 1995 Jan;9(1):63-9 PMID: 7704027
  14. Major histocompatibility complex class II genes of zebrafish.
    Proc Natl Acad Sci U S A. 1992 Dec 15;89(24):11886-90 PMID: 1465413
  15. Half-tetrad analysis in zebrafish: mapping the ros mutation and the centromere of linkage group I.
    Genetics. 1995 Apr;139(4):1727-35 PMID: 7789773
  16. Gene-centromere linkage mapping by PCR analysis of individual oocytes.
    Genomics. 1992 Jul;13(3):713-7 PMID: 1639398
  17. Comparative mapping reveals extensive linkage conservation--but with gene order rearrangements--between the pig and the human genomes.
    Genomics. 1995 Feb 10;25(3):682-90 PMID: 7759103
  18. Genetics and early development of zebrafish.
    Trends Genet. 1989 Aug;5(8):283-8 PMID: 2686119
  19. Temperature-sensitive mutations that cause stage-specific defects in Zebrafish fin regeneration.
    Genetics. 1995 Dec;141(4):1583-95 PMID: 8601496
  20. Biochemical Mutants in the Smut Fungus Ustilago Maydis.
    Genetics. 1949 Sep;34(5):607-26 PMID: 17247336
  21. A genetic map of the mouse with 4,006 simple sequence length polymorphisms.
    Nat Genet. 1994 Jun;7(2 Spec No):220-45 PMID: 7920646
  22. Regional expression of three homeobox transcripts in the inner ear of zebrafish embryos.
    Neuron. 1992 Jul;9(1):27-35 PMID: 1352984
  23. A comprehensive human linkage map with centimorgan density. Cooperative Human Linkage Center (CHLC).
    Science. 1994 Sep 30;265(5181):2049-54 PMID: 8091227
  24. The Detection of Linkage in Tetrad Analysis.
    Genetics. 1953 Mar;38(2):187-97 PMID: 17247432
  25. Identification of RAPD primers that reveal extensive polymorphisms between laboratory strains of zebrafish.
    Genomics. 1994 Jan 1;19(1):152-6 PMID: 8188217
  26. Zebrafish: genetic tools for studying vertebrate development.
    Trends Genet. 1994 May;10(5):152-9 PMID: 8036717
  27. A genetic linkage map of the mouse: current applications and future prospects.
    Science. 1993 Oct 1;262(5130):57-66 PMID: 8211130
  28. A rat genetic linkage map and comparative maps for mouse or human homologous rat genes.
    Mamm Genome. 1994 Feb;5(2):63-83 PMID: 8180477
  29. Mortality among the elderly in the Alameda County Study: behavioral and demographic risk factors.
    Am J Public Health. 1987 Mar;77(3):307-12 PMID: 3812836
  30. The PiGMaP consortium linkage map of the pig (Sus scrofa).
    Mamm Genome. 1995 Mar;6(3):157-75 PMID: 7749223
  31. The mouse short ear skeletal morphogenesis locus is associated with defects in a bone morphogenetic member of the TGF beta superfamily.
    Cell. 1992 Oct 30;71(3):399-410 PMID: 1339316
  32. Zebrafish hit the big time.
    Science. 1994 May 13;264(5161):904-5 PMID: 8178149
  33. Mutational approaches to studying embryonic pattern formation in the zebrafish.
    Curr Opin Genet Dev. 1993 Aug;3(4):648-54 PMID: 8241774
  34. A genetic linkage map of the bovine genome.
    Nat Genet. 1994 Mar;6(3):227-35 PMID: 8012383
  35. Gene-centromere mapping and the study of non-disjunction in autosomal trisomies and ovarian teratomas.
    Prog Clin Biol Res. 1989;311:45-79 PMID: 2771999
Article Info
Journal
Genetics
Abbr.
Genetics
ISSN
0016-6731
Published
1996-04-00
Pages
1277-88
Language
English
Region
United States
NLM ID
0374636
PMCID
PMC1207124
Subset
IM
Grants
NICHD NIH HHS · 1PO1HD-22486 · United States
NIAID NIH HHS · 1RO1AI-26734 · United States
NICHD NIH HHS · HD-07470 · United States
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