Home LiteratureArticle Details
PMID: 8355657 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Potentially rapid walking in cellular regulatory networks using the gene-gene interference method in yeast.

Molecular & general genetics : MGG ·Vol. 240 ·No. 2 ·1993-08-00 ·Pages 245-57

Daniel J

Abstract

The recognition that cellular regulatory circuitry is composed of antagonistic elements has made possible a new approach to the selection of regulatory genes, called the gene-gene interference method. The method was used to identify and isolate genes possibly related in an antagonistic way to protein kinase A. Two such genes were recovered: ART1 encodes a potential regulator of cytokinesis and KAI1 appears to be involved in the Start control. The principles of the gene-gene interference method are discussed, as well as its possible general use for 'walking' within the cellular regulatory networks of eukaryotes.

Related Genes
MeSH Terms
Amino Acid Sequence Antigens, CD Base Sequence Calcium-Binding Proteins Cell Division/genetics Chromosome Walking/methods Cloning, Molecular DNA, Fungal DNA-Binding Proteins Fungal Proteins/genetics Gene Expression Regulation, Fungal Genes, Fungal Genes, Regulator Genetic Vectors Intracellular Signaling Peptides and Proteins Kangai-1 Protein Membrane Glycoproteins Membrane Proteins Molecular Sequence Data Plasmids Protein Kinase Inhibitors Protein Kinases/genetics Proto-Oncogene Proteins Saccharomyces cerevisiae/enzymology,genetics,growth & development Saccharomyces cerevisiae Proteins Sequence Homology, Amino Acid Transcription Factors Transformation, Genetic
Chemicals
Antigens, CD Calcium-Binding Proteins DNA, Fungal DNA-Binding Proteins Fungal Proteins Intracellular Signaling Peptides and Proteins Kangai-1 Protein MID2 protein, S cerevisiae Membrane Glycoproteins Membrane Proteins Protein Kinase Inhibitors Proto-Oncogene Proteins SWI4 protein, S cerevisiae Saccharomyces cerevisiae Proteins Transcription Factors Protein Kinases
Authors & Affiliations
1 authors, click to expand affiliations / ORCID
Daniel J
Department of Biochemistry, Weizmann Institute of Science, Rehovot, Israel.
References (56)
56 references, click to expand
  1. The ras oncogene--an important regulatory element in lower eucaryotic organisms.
    Microbiol Rev. 1989 Jun;53(2):171-85 PMID: 2547147
  2. Identification of p34 and p13, human homologs of the cell cycle regulators of fission yeast encoded by cdc2+ and suc1+.
    Cell. 1987 Jul 17;50(2):319-25 PMID: 3297353
  3. Negative regulation of mitosis by wee1+, a gene encoding a protein kinase homolog.
    Cell. 1987 May 22;49(4):559-67 PMID: 3032459
  4. A novel genetic system to detect protein-protein interactions.
    Nature. 1989 Jul 20;340(6230):245-6 PMID: 2547163
  5. Genetic control of cell size at cell division in yeast.
    Nature. 1975 Aug 14;256(5518):547-51 PMID: 1165770
  6. Genetic control of the cell division cycle in yeast. IV. Genes controlling bud emergence and cytokinesis.
    Exp Cell Res. 1971 Dec;69(2):265-76 PMID: 4950437
  7. The cdc25 protein contains an intrinsic phosphatase activity.
    Cell. 1991 Oct 4;67(1):189-96 PMID: 1655274
  8. Role of multiple basic residues in determining the substrate specificity of cyclic AMP-dependent protein kinase.
    J Biol Chem. 1977 Jul 25;252(14):4888-94 PMID: 194899
  9. Complementation used to clone a human homologue of the fission yeast cell cycle control gene cdc2.
    Nature. 1987 May 7-13;327(6117):31-5 PMID: 3553962
  10. A family of cyclin homologs that control the G1 phase in yeast.
    Proc Natl Acad Sci U S A. 1989 Aug;86(16):6255-9 PMID: 2569741
  11. A simple method for displaying the hydropathic character of a protein.
    J Mol Biol. 1982 May 5;157(1):105-32 PMID: 7108955
  12. Fission yeast p107wee1 mitotic inhibitor is a tyrosine/serine kinase.
    Nature. 1991 Feb 28;349(6312):808-11 PMID: 1825699
  13. IRA1, an inhibitory regulator of the RAS-cyclic AMP pathway in Saccharomyces cerevisiae.
    Mol Cell Biol. 1989 Feb;9(2):757-68 PMID: 2540426
  14. The ADE2 gene from Saccharomyces cerevisiae: sequence and new vectors.
    Gene. 1990 Oct 30;95(1):91-8 PMID: 2253890
  15. Mitotic stability of yeast chromosomes: a colony color assay that measures nondisjunction and chromosome loss.
    Cell. 1985 Feb;40(2):381-92 PMID: 3967296
  16. Nonsense mutations in essential genes of Saccharomyces cerevisiae.
    Genetics. 1988 Apr;118(4):601-7 PMID: 3284786
  17. Conservation of mitotic controls in fission and budding yeasts.
    Cell. 1989 Apr 21;57(2):295-303 PMID: 2649252
  18. Three different genes in S. cerevisiae encode the catalytic subunits of the cAMP-dependent protein kinase.
    Cell. 1987 Jul 17;50(2):277-87 PMID: 3036373
  19. Mammalian growth-associated H1 histone kinase: a homolog of cdc2+/CDC28 protein kinases controlling mitotic entry in yeast and frog cells.
    Mol Cell Biol. 1989 Sep;9(9):3860-8 PMID: 2550805
  20. DNA sequencing with chain-terminating inhibitors.
    Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463-7 PMID: 271968
  21. One-step gene disruption in yeast.
    Methods Enzymol. 1983;101:202-11 PMID: 6310324
  22. Characterization, cloning and sequence analysis of the CDC25 gene which controls the cyclic AMP level of Saccharomyces cerevisiae.
    EMBO J. 1986 Feb;5(2):375-80 PMID: 3011405
  23. Unipolar cell divisions in the yeast S. cerevisiae lead to filamentous growth: regulation by starvation and RAS.
    Cell. 1992 Mar 20;68(6):1077-90 PMID: 1547504
  24. Two differentially regulated mRNAs with different 5' ends encode secreted with intracellular forms of yeast invertase.
    Cell. 1982 Jan;28(1):145-54 PMID: 7039847
  25. Codon selection in yeast.
    J Biol Chem. 1982 Mar 25;257(6):3026-31 PMID: 7037777
  26. The mitotic inducer nim1+ functions in a regulatory network of protein kinase homologs controlling the initiation of mitosis.
    Cell. 1987 May 22;49(4):569-76 PMID: 3453113
  27. Characterization of the transcriptional potency of sub-elements of the UAS of the yeast PGK gene in a PGK mini-promoter.
    Nucleic Acids Res. 1989 Nov 25;17(22):9205-18 PMID: 2685757
  28. Protein structural domains in the Caenorhabditis elegans unc-54 myosin heavy chain gene are not separated by introns.
    Proc Natl Acad Sci U S A. 1983 Jul;80(14):4253-7 PMID: 6576334
  29. CDC25: a component of the RAS-adenylate cyclase pathway in Saccharomyces cerevisiae.
    Science. 1987 Mar 6;235(4793):1218-21 PMID: 3547648
  30. Isolation and nucleotide sequence of a Saccharomyces cerevisiae protein kinase gene suppressing the cell cycle start mutation cdc25.
    J Biol Chem. 1987 Feb 25;262(6):2549-53 PMID: 3546292
  31. Construction and characterization of new cloning vehicles. II. A multipurpose cloning system.
    Gene. 1977;2(2):95-113 PMID: 344137
  32. Initiation of meiosis in cell cycle initiation mutants of Saccharomyces cerevisiae.
    Exp Cell Res. 1978 Mar 15;112(2):241-8 PMID: 344051
  33. Intracellular and extracellular levels of cyclic AMP during the cell cycle of Saccharomyces cerevisiae.
    Yeast. 1990 Jan-Feb;6(1):53-60 PMID: 2156391
  34. In yeast, RAS proteins are controlling elements of adenylate cyclase.
    Cell. 1985 Jan;40(1):27-36 PMID: 2981630
  35. Nucleotide sequence of a chicken vitellogenin gene and derived amino acid sequence of the encoded yolk precursor protein.
    J Mol Biol. 1987 Jul 20;196(2):245-60 PMID: 3477646
  36. Protein kinase activity associated with the product of the yeast cell division cycle gene CDC28.
    Proc Natl Acad Sci U S A. 1985 Jun;82(12):4055-9 PMID: 3889921
  37. Dephosphorylation and activation of a p34cdc2/cyclin B complex in vitro by human CDC25 protein.
    Nature. 1991 May 16;351(6323):242-5 PMID: 1828290
  38. The WHI1+ gene of Saccharomyces cerevisiae tethers cell division to cell size and is a cyclin homolog.
    EMBO J. 1988 Dec 20;7(13):4335-46 PMID: 2907481
  39. cdc25 is a specific tyrosine phosphatase that directly activates p34cdc2.
    Cell. 1991 Oct 4;67(1):197-211 PMID: 1913817
  40. The yeast type II myosin heavy chain: analysis of its predicted polypeptide sequence.
    J Muscle Res Cell Motil. 1991 Feb;12(1):61-8 PMID: 2050812
  41. A highly ordered ring of membrane-associated filaments in budding yeast.
    J Cell Biol. 1976 Jun;69(3):717-21 PMID: 773946
  42. Genetic analysis of the mitotic transmission of minichromosomes.
    Cell. 1985 Feb;40(2):393-403 PMID: 3881185
  43. The S. cerevisiae CDC25 gene product regulates the RAS/adenylate cyclase pathway.
    Cell. 1987 Mar 13;48(5):789-99 PMID: 3545497
  44. Genes which control cell proliferation in the yeast Saccharomyces cerevisiae.
    Nature. 1980 Nov 27;288(5789):401-4 PMID: 7001255
  45. The yeast MYO1 gene encoding a myosin-like protein required for cell division.
    EMBO J. 1987 Nov;6(11):3499-505 PMID: 3322809
  46. Conservation of function and regulation within the Cdc28/cdc2 protein kinase family: characterization of the human Cdc2Hs protein kinase in Saccharomyces cerevisiae.
    Mol Cell Biol. 1989 Sep;9(9):4064-8 PMID: 2674687
  47. Clones from two different genomic regions complement the cdc25 start mutation of Saccharomyces cerevisiae.
    Curr Genet. 1986;10(9):643-6 PMID: 3329039
  48. Transformation in yeast: development of a hybrid cloning vector and isolation of the CAN1 gene.
    Gene. 1979 Dec;8(1):121-33 PMID: 395029
  49. Cloning and characterization of BCY1, a locus encoding a regulatory subunit of the cyclic AMP-dependent protein kinase in Saccharomyces cerevisiae.
    Mol Cell Biol. 1987 Apr;7(4):1371-7 PMID: 3037314
  50. Functional homology of mammalian and yeast RAS genes.
    Cell. 1985 Jan;40(1):19-26 PMID: 2981628
  51. The activation of adenylate cyclase by guanyl nucleotides in Saccharomyces cerevisiae is controlled by the CDC25 start gene product.
    Mol Cell Biol. 1987 Oct;7(10):3857-61 PMID: 3119992
  52. cdc25+ functions as an inducer in the mitotic control of fission yeast.
    Cell. 1986 Apr 11;45(1):145-53 PMID: 3955656
  53. Sterile host yeasts (SHY): a eukaryotic system of biological containment for recombinant DNA experiments.
    Gene. 1979 Dec;8(1):17-24 PMID: 395030
  54. Yeast MIG1 repressor is related to the mammalian early growth response and Wilms' tumour finger proteins.
    EMBO J. 1990 Sep;9(9):2891-8 PMID: 2167835
  55. Transformation of intact yeast cells treated with alkali cations.
    J Bacteriol. 1983 Jan;153(1):163-8 PMID: 6336730
  56. Identification of myosin heavy chain in Saccharomyces cerevisiae.
    Nature. 1985 Jul 4-10;316(6023):83-5 PMID: 3892306
Article Info
Journal
Molecular & general genetics : MGG
Abbr.
Mol Gen Genet
ISSN
0026-8925
Published
1993-08-00
Pages
245-57
Language
English
Region
Germany
NLM ID
0125036
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com