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PMID: 8282711 Published · ppublish English Comparative Study Journal Article Research Support, U.S. Gov't, P.H.S.

Nucleotide sequence and characterization of the Rhodobacter capsulatus hvrB gene: HvrB is an activator of S-adenosyl-L-homocysteine hydrolase expression and is a member of the LysR family.

Journal of bacteriology ·Vol. 176 ·No. 1 ·1994-01-00 ·Pages 61-9

Buggy JJ, Sganga MW, Bauer CE

Abstract

Here we present the nucleotide sequence and characterization of two genes, hvrB and orf5, that are located in the regulatory gene cluster from Rhodobacter capsulatus. The hvrB gene, which encodes a protein with a predicted molecular mass of 32 kDa, is shown to be highly homologous to genes encoding members of the LysR family of bacterial transcriptional regulators. A chromosomal disruption of hvrB is shown to result in the failure to regulate expression from the nearby ahcY and orf5 genes in response to alterations in light intensity. We show by primer extension mapping that the 5' end of ahcY-specific mRNA defines a promoter region exhibiting sequence similarity to known R. capsulatus promoter elements. Our mutational analysis further demonstrates that hvrB autoregulates its own expression in vivo.

Related Genes
MeSH Terms
Adenosylhomocysteinase Amino Acid Sequence Bacterial Proteins/genetics Base Sequence Conserved Sequence Enzyme Activation Gene Expression Regulation, Bacterial/radiation effects Genes, Bacterial/genetics Genes, Regulator/genetics Hydrolases/biosynthesis,genetics Light Molecular Sequence Data Multigene Family/genetics Open Reading Frames/genetics Promoter Regions, Genetic/genetics Rhodobacter capsulatus/enzymology,genetics,radiation effects Sequence Analysis, DNA Sequence Homology, Amino Acid Sequence Homology, Nucleic Acid Transcription Factors/genetics
Chemicals
Bacterial Proteins HvrB protein, Rhodobacter capsulatus Transcription Factors LysR protein, Bacteria Hydrolases Adenosylhomocysteinase
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Buggy J J
Department of Biology, Indiana University, Bloomington 47405.
Sganga M W
Bauer C E
References (32)
32 references, click to expand
  1. The regulation of synthesis of iron and magnesium tetrapyrroles. Observations with mutant strains of Rhodopseudomonas spheroides.
    Biochem J. 1966 Jul;100(1):184-9 PMID: 5966537
  2. Magnesium protoporphyrin chelatase activity in Rhodopseudomonas spheroides. Studies with whole cells.
    Biochem J. 1972 Mar;127(1):97-106 PMID: 4627449
  3. Characterization of Rhodopseudomonas capsulata.
    Arch Microbiol. 1975 Nov 7;105(3):207-16 PMID: 1103769
  4. The mechanism of action of S-adenosylhomocysteinase.
    J Biol Chem. 1979 Feb 25;254(4):1217-26 PMID: 762125
  5. A new pair of M13 vectors for selecting either DNA strand of double-digest restriction fragments.
    Gene. 1982 Oct;19(3):269-76 PMID: 6295880
  6. Alignment of genetic and restriction maps of the photosynthesis region of the Rhodopseudomonas capsulata chromosome by a conjugation-mediated marker rescue technique.
    J Bacteriol. 1983 May;154(2):580-90 PMID: 6302077
  7. Sequence diversity among related genes for recognition of specific targets in DNA molecules.
    J Mol Biol. 1983 May 5;166(1):1-19 PMID: 6304321
  8. Activation of extra copies of genes coding for nitrogenase in Rhodopseudomonas capsulata.
    Nature. 1984 Jan 19-25;307(5948):289-92 PMID: 6582352
  9. The codon preference plot: graphic analysis of protein coding sequences and prediction of gene expression.
    Nucleic Acids Res. 1984 Jan 11;12(1 Pt 2):539-49 PMID: 6694906
  10. In vitro insertional mutagenesis with a selectable DNA fragment.
    Gene. 1984 Sep;29(3):303-13 PMID: 6237955
  11. Improved plasmid vectors for the isolation of translational lac gene fusions.
    Gene. 1984 Nov;31(1-3):269-73 PMID: 6098531
  12. Single-stranded hexameric linkers: a system for in-phase insertion mutagenesis and protein engineering.
    Gene. 1985;37(1-3):111-23 PMID: 3902569
  13. Nodulation of legumes by Rhizobium: the recognized root?
    Cell. 1986 Oct 24;47(2):153-4 PMID: 3768953
  14. Amino acid sequence of S-adenosyl-L-homocysteine hydrolase from rat liver as derived from the cDNA sequence.
    Proc Natl Acad Sci U S A. 1987 Feb;84(3):719-23 PMID: 3027698
  15. A new methionine locus, metR, that encodes a trans-acting protein required for activation of metE and metH in Escherichia coli and Salmonella typhimurium.
    J Bacteriol. 1987 Apr;169(4):1391-7 PMID: 3549685
  16. Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction.
    Anal Biochem. 1987 Apr;162(1):156-9 PMID: 2440339
  17. Nucleotide sequence of the Salmonella typhimurium metR gene and the metR-metE control region.
    J Bacteriol. 1987 Sep;169(9):3932-7 PMID: 3040668
  18. Systematic method for the detection of potential lambda Cro-like DNA-binding regions in proteins.
    J Mol Biol. 1987 Apr 5;194(3):557-64 PMID: 3625774
  19. Amino acid sequence of S-adenosyl-L-homocysteine hydrolase from Dictyostelium discoideum as deduced from the cDNA sequence.
    Biochem Biophys Res Commun. 1988 May 31;153(1):359-64 PMID: 3288206
  20. A large family of bacterial activator proteins.
    Proc Natl Acad Sci U S A. 1988 Sep;85(18):6602-6 PMID: 3413113
  21. Rhodobacter capsulatus puf operon encodes a regulatory protein (PufQ) for bacteriochlorophyll biosynthesis.
    Proc Natl Acad Sci U S A. 1988 Oct;85(19):7074-8 PMID: 3174621
  22. Sequence of the Pseudomonas aeruginosa trpI activator gene and relatedness of trpI to other procaryotic regulatory genes.
    J Bacteriol. 1989 Jan;171(1):172-83 PMID: 2492495
  23. Genetic evidence for superoperonal organization of genes for photosynthetic pigments and pigment-binding proteins in Rhodobacter capsulatus.
    Mol Gen Genet. 1989 Jul;218(1):1-12 PMID: 2550757
  24. Sequence of full length cDNA for human S-adenosylhomocysteine hydrolase.
    Ann Hum Genet. 1989 May;53(Pt 2):169-75 PMID: 2596825
  25. Regulatory factors controlling photosynthetic reaction center and light-harvesting gene expression in Rhodobacter capsulatus.
    Cell. 1992 Mar 6;68(5):945-54 PMID: 1547494
  26. Mutational and nucleotide sequence analysis of S-adenosyl-L-homocysteine hydrolase from Rhodobacter capsulatus.
    Proc Natl Acad Sci U S A. 1992 Jul 15;89(14):6328-32 PMID: 1631127
  27. Control of photosystem genes in Rhodobacter capsulatus.
    Trends Genet. 1993 Feb;9(2):56-60 PMID: 8456503
  28. Analysis of the promoter and regulatory sequences of an oxygen-regulated bch operon in Rhodobacter capsulatus by site-directed mutagenesis.
    J Bacteriol. 1993 Apr;175(7):2037-45 PMID: 8458846
  29. Kinetic studies of pigment synthesis by non-sulfur purple bacteria.
    J Cell Physiol. 1957 Feb;49(1):25-68 PMID: 13416343
  30. The enzymatic synthesis of S-adenosyl-L-homocysteine from adenosine and homocysteine.
    J Biol Chem. 1959 Mar;234(3):603-8 PMID: 13641268
  31. Studies on the biosynthesis of porphyrin and bacteriochlorophyll by Rhodopseudomonas spheroides. 2. The effects of ethionine and threonine.
    Biochem J. 1962 Jun;83:550-9 PMID: 13898422
  32. STUDIES ON THE BIOSYNTHESIS OF PORPHYRIN AND BACTERIOCHLOROPHYLL BY RHODOPSEUDOMONAS SPHEROIDES. 4. S-ADENOSYLMETHIONINEMAGNESIUM PROTOPORPHYRIN METHYLTRANSFERASE.
    Biochem J. 1963 Aug;88:325-34 PMID: 14063871
Article Info
Journal
Journal of bacteriology
Abbr.
J Bacteriol
ISSN
0021-9193
Published
1994-01-00
Pages
61-9
Language
English
Region
United States
NLM ID
2985120R
PMCID
PMC205014
Subset
IM
Grants
NIGMS NIH HHS · R01 GM040941 · United States
NIGMS NIH HHS · R37 GM040941 · United States
NIGMS NIH HHS · GM40941-01 · United States
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