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PMID: 8226680 Published · ppublish English Comparative Study Journal Article Research Support, Non-U.S. Gov't

The cbb operons of the facultative chemoautotroph Alcaligenes eutrophus encode phosphoglycolate phosphatase.

Journal of bacteriology ·Vol. 175 ·No. 22 ·1993-11-00 ·Pages 7329-40

Schäferjohann J, Yoo JG, Kusian B, Bowien B

Abstract

The two highly homologous cbb operons of Alcaligenes eutrophus H16 that are located on the chromosome and on megaplasmid pHG1 contain genes encoding several enzymes of the Calvin carbon reduction cycle. Sequence analysis of a region from the promoter-distal part revealed two open reading frames, designated cbbT and cbbZ, at equivalent positions within the operons. Comparisons with known sequences suggested cbbT to encode transketolase (TK; EC 2.2.1.1) as an additional enzyme of the cycle. No significant overall sequence similarities were observed for cbbZ. Although both regions exhibited very high nucleotide identities, 93% (cbbZ) and 96% (cbbT), only the chromosomally encoded genes were heterologously expressed to high levels in Escherichia coli. The molecular masses of the observed gene products, CbbT (74 kDa) and CbbZ (24 kDa), correlated well with the values calculated on the basis of the sequence information. TK activities were strongly elevated in E. coli clones expressing cbbT, confirming the identity of the gene. Strains of E. coli harboring the chromosomal cbbZ gene showed high levels of activity of 2-phosphoglycolate phosphatase (PGP; EC 3.1.3.18), a key enzyme of glycolate metabolism in autotrophic organisms that is not present in wild-type E. coli. Derepression of the cbb operons during autotrophic growth resulted in considerably increased levels of TK activity and the appearance of PGP activity in A. eutrophus, although the pHG1-encoded cbbZ gene was apparently not expressed. To our knowledge, this study represents the first cloning and sequencing of a PGP gene from any organism.

Related Genes
MeSH Terms
Alcaligenes/enzymology,genetics Amino Acid Sequence Bacteria/enzymology,genetics Base Sequence Chromosomes, Bacterial Genotype Molecular Sequence Data Open Reading Frames Operon Phenotype Phosphoric Monoester Hydrolases/biosynthesis,genetics,isolation & purification Plasmids Sequence Homology, Amino Acid Sequence Homology, Nucleic Acid Transketolase/genetics
Chemicals
Transketolase phosphoglycolate phosphatase Phosphoric Monoester Hydrolases
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Schäferjohann J
Institut für Mikrobiologie, Georg-August-Universität Göttingen, Germany.
Yoo J G
Kusian B
Bowien B
References (36)
36 references, click to expand
  1. Cleavage of structural proteins during the assembly of the head of bacteriophage T4.
    Nature. 1970 Aug 15;227(5259):680-5 PMID: 5432063
  2. On the operon structure of the cfx gene clusters in Alcaligenes eutrophus.
    Arch Microbiol. 1990;154(1):85-91 PMID: 2168696
  3. Improved tools for biological sequence comparison.
    Proc Natl Acad Sci U S A. 1988 Apr;85(8):2444-8 PMID: 3162770
  4. Cloning and characterization of the DAS gene encoding the major methanol assimilatory enzyme from the methylotrophic yeast Hansenula polymorpha.
    Nucleic Acids Res. 1985 May 10;13(9):3043-62 PMID: 2987872
  5. Identification, expression, and deduced primary structure of transketolase and other enzymes encoded within the form II CO2 fixation operon of Rhodobacter sphaeroides.
    J Biol Chem. 1991 Oct 25;266(30):20447-52 PMID: 1939098
  6. Uniform designation for genes of the Calvin-Benson-Bassham reductive pentose phosphate pathway of bacteria.
    FEMS Microbiol Lett. 1992 Dec 1;78(2-3):107-10 PMID: 1490592
  7. Physiology and biochemistry of aerobic hydrogen-oxidizing bacteria.
    Annu Rev Microbiol. 1981;35:405-52 PMID: 6271040
  8. Characterization of alcohol dehydrogenase genes of derepressible wild-type Alcaligenes eutrophus H16 and constitutive mutants.
    J Bacteriol. 1990 Sep;172(9):4844-51 PMID: 2144274
  9. Genetic transformation in Streptococcus pneumoniae: nucleotide sequence and predicted amino acid sequence of recP.
    J Bacteriol. 1990 Jul;172(7):3669-74 PMID: 2361942
  10. Properties of Phosphoglycolate Phosphatase from Chlamydomonas reinhardtii and Anacystis nidulans.
    Plant Physiol. 1985 Oct;79(2):394-9 PMID: 16664420
  11. Phosphoglycolate phosphatase. Effect of cation and pH on activity.
    J Biol Chem. 1978 Mar 25;253(6):1786-90 PMID: 24629
  12. Identification of cfxR, an activator gene of autotrophic CO2 fixation in Alcaligenes eutrophus.
    Mol Microbiol. 1991 Nov;5(11):2695-705 PMID: 1779759
  13. Ribulose diphosphate oxygenase. II. Further proof of reaction products and mechanism of action.
    Biochemistry. 1973 Jan 2;12(1):18-23 PMID: 4683482
  14. The pUC plasmids, an M13mp7-derived system for insertion mutagenesis and sequencing with synthetic universal primers.
    Gene. 1982 Oct;19(3):259-68 PMID: 6295879
  15. Enzymes of pentose biosynthesis. The quaternary structure and reacting form of transketolase from baker's yeast.
    Arch Biochem Biophys. 1975 Dec;171(2):527-32 PMID: 1106327
  16. Naturally occurring genetic transfer of hydrogen-oxidizing ability between strains of Alcaligenes eutrophus.
    J Bacteriol. 1981 Jul;147(1):198-205 PMID: 6787025
  17. DNA sequencing with chain-terminating inhibitors.
    Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463-7 PMID: 271968
  18. Unidirectional digestion with exonuclease III creates targeted breakpoints for DNA sequencing.
    Gene. 1984 Jun;28(3):351-9 PMID: 6235151
  19. Isolation of a new gene from the distal short arm of the human X chromosome that escapes X-inactivation.
    Hum Mol Genet. 1992 Apr;1(1):47-52 PMID: 1284467
  20. Chromosomal and plasmid locations for phosphoribulokinase genes in Alcaligenes eutrophus.
    J Bacteriol. 1985 Nov;164(2):954-6 PMID: 2997141
  21. Basic local alignment search tool.
    J Mol Biol. 1990 Oct 5;215(3):403-10 PMID: 2231712
  22. Novel expression of the ribosomal RNA genes in the extreme thermophile and archaebacterium Desulfurococcus mobilis.
    EMBO J. 1987 Nov;6(11):3521-30 PMID: 16453807
  23. A comprehensive set of sequence analysis programs for the VAX.
    Nucleic Acids Res. 1984 Jan 11;12(1 Pt 1):387-95 PMID: 6546423
  24. The Calvin cycle enzyme pentose-5-phosphate 3-epimerase is encoded within the cfx operons of the chemoautotroph Alcaligenes eutrophus.
    J Bacteriol. 1992 Nov;174(22):7337-44 PMID: 1429456
  25. Mechanism of activation by anions of phosphoglycolate phosphatases from spinach and human red blood cells.
    J Biol Chem. 1986 Aug 25;261(24):10996-1002 PMID: 3015949
  26. Evolutionary differences in chromosomal locations of four early genes of the tryptophan pathway in fluorescent pseudomonads: DNA sequences and characterization of Pseudomonas putida trpE and trpGDC.
    J Bacteriol. 1990 Feb;172(2):867-83 PMID: 2404959
  27. DNA sequence of the yeast transketolase gene.
    Biochemistry. 1992 Feb 18;31(6):1892-6 PMID: 1737042
  28. Molecular characterization and expression analysis of the anthranilate synthase gene of Pseudomonas syringae subsp. savastanoi.
    J Bacteriol. 1991 Jan;173(2):463-71 PMID: 1987141
  29. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors.
    Gene. 1985;33(1):103-19 PMID: 2985470
  30. Protein measurement with the Folin phenol reagent.
    J Biol Chem. 1951 Nov;193(1):265-75 PMID: 14907713
  31. Glycollate production and excretion by Alcaligenes eutrophus.
    Arch Microbiol. 1976 Nov 2;110(23):167-71 PMID: 189720
  32. Binding of substrate and transition state analog to trisephosphate isomerase.
    Biochemistry. 1970 Aug 18;9(17):3404-7 PMID: 5535476
  33. Determinant of cistron specificity in bacterial ribosomes.
    Nature. 1975 Mar 6;254(5495):34-8 PMID: 803646
  34. Molecular analysis of the Alcaligenes eutrophus poly(3-hydroxybutyrate) biosynthetic operon: identification of the N terminus of poly(3-hydroxybutyrate) synthase and identification of the promoter.
    J Bacteriol. 1991 Jan;173(1):168-75 PMID: 1987116
  35. Sequence analysis of the chromosomal and plasmid genes encoding phosphoribulokinase from Alcaligenes eutrophus.
    Gene. 1989 Dec 21;85(1):247-52 PMID: 2559876
  36. Cloning and expression of the gene encoding Lactobacillus casei folylpoly-gamma-glutamate synthetase in Escherichia coli and determination of its primary structure.
    J Biol Chem. 1990 Feb 15;265(5):2492-9 PMID: 2105929
Article Info
Journal
Journal of bacteriology
Abbr.
J Bacteriol
ISSN
0021-9193
Published
1993-11-00
Pages
7329-40
Language
English
Region
United States
NLM ID
2985120R
PMCID
PMC206877
Subset
IM
Databases
GENBANK
M68904, M68905
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