Abstract
Some mitochondrial tRNA genes of land snails show mismatches in the acceptor stems predicted from their gene sequences. The majority of these mismatches fall in regions where the tRNA genes overlap with adjacent downstream genes. We have synthesized cDNA from four circularized tRNAs and determined the sequences of the 5' and 3' parts of their acceptor stems. Three of the four tRNAs differ from their corresponding genes at a total of 13 positions, which all fall in the 3' part of the acceptor stems as well as the discriminator bases. The editing events detected involve changes from cytidine, thymidine, and guanosine to adenosine residues, which generally restore base-pairing in the stems. However, in one case an A-A mismatch is created from an A-C mismatch. It is suggested that this form of RNA editing may involve polyadenylylation of the maturing tRNAs as an intermediate.
MeSH Terms
Animals
Base Sequence
DNA Primers
DNA, Complementary
DNA, Mitochondrial/genetics
Mitochondria/metabolism
Molecular Sequence Data
Nucleic Acid Conformation
Polymerase Chain Reaction
RNA/biosynthesis,chemistry,genetics
RNA, Mitochondrial
RNA, Transfer/biosynthesis,chemistry,genetics
Sequence Homology, Nucleic Acid
Snails/genetics
Chemicals
DNA Primers
DNA, Complementary
DNA, Mitochondrial
RNA, Mitochondrial
RNA
RNA, Transfer
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Yokobori S
Institute of Zoology, University of Munich, Germany.
Pääbo S
References (19)
19 references, click to expand
-
Animal mitochondrial DNA: an extreme example of genetic economy.
Int Rev Cytol. 1985;93:93-145
PMID: 3891661
-
tRNA punctuation model of RNA processing in human mitochondria.
Nature. 1981 Apr 9;290(5806):470-4
PMID: 7219536
-
Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction.
Anal Biochem. 1987 Apr;162(1):156-9
PMID: 2440339
-
Histidine tRNA from chicken mitochondria has an uncoded 5'-terminal guanylate residue.
J Biol Chem. 1990 Feb 15;265(5):2988-92
PMID: 1689297
-
The mitochondrial genomes of two nematodes, Caenorhabditis elegans and Ascaris suum.
Genetics. 1992 Mar;130(3):471-98
PMID: 1551572
-
Different types of messenger RNA editing.
Annu Rev Genet. 1991;25:71-88
PMID: 1725953
-
A novel mitochondrial genome organization for the blue mussel, Mytilus edulis.
Genetics. 1992 Jun;131(2):397-412
PMID: 1386586
-
Animal mitochondrial DNA: structure and evolution.
Int Rev Cytol. 1992;141:173-216
PMID: 1452431
-
Editing of transfer RNAs in Acanthamoeba castellanii mitochondria.
Science. 1993 Feb 5;259(5096):812-6
PMID: 8430334
-
Editing of a tRNA anticodon in marsupial mitochondria changes its codon recognition.
Nucleic Acids Res. 1993 Apr 11;21(7):1523-5
PMID: 8479901
-
Compilation of tRNA sequences and sequences of tRNA genes.
Nucleic Acids Res. 1993 Jul 1;21(13):3011-5
PMID: 7687348
-
Origin and evolution of organelle genomes.
Curr Opin Genet Dev. 1993 Dec;3(6):884-90
PMID: 8118213
-
Editing corrects mispairing in the acceptor stem of bean and potato mitochondrial phenylalanine transfer RNAs.
Nucleic Acids Res. 1993 Oct 25;21(21):4909-14
PMID: 8177739
-
Novel features of metazoan mtDNA revealed from sequence analysis of three mitochondrial DNA segments of the land snail Albinaria turrita (Gastropoda: Clausiliidae).
J Mol Evol. 1994 Apr;38(4):369-82
PMID: 8007005
-
Complete DNA sequence of the mitochondrial genome of the black chiton, Katharina tunicata.
Genetics. 1994 Oct;138(2):423-43
PMID: 7828825
-
Complete sequence and gene organization of the mitochondrial genome of the land snail Albinaria coerulea.
Genetics. 1995 Aug;140(4):1353-66
PMID: 7498775
-
Reactions at the termini of tRNA with T4 RNA ligase.
Nucleic Acids Res. 1978 Oct;5(10):3665-77
PMID: 724498
-
Sequence and organization of the human mitochondrial genome.
Nature. 1981 Apr 9;290(5806):457-65
PMID: 7219534
-
The mitochondrial DNA molecular of Drosophila yakuba: nucleotide sequence, gene organization, and genetic code.
J Mol Evol. 1985;22(3):252-71
PMID: 3001325