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PMID: 7321107 Published · ppublish English Journal Article

Proposal for naming host cell-derived inserts in retrovirus genomes.

Journal of virology ·Vol. 40 ·No. 3 ·1981-12-00 ·Pages 953-7

Coffin JM, Varmus HE, Bishop JM, Essex M, Hardy WD, Martin GS, Rosenberg NE, Scolnick EM, Weinberg RA, Vogt PK

Abstract

We propose a system for naming inserted sequences in transforming retroviruses (i.e., onc genes), based on using trivial names derived from a prototype strain of virus.

MeSH Terms
Base Sequence Cell Transformation, Neoplastic Cell Transformation, Viral Genes, Viral Recombination, Genetic Retroviridae/genetics Terminology as Topic Viral Proteins/genetics
Chemicals
Viral Proteins
Authors & Affiliations
10 authors, click to expand affiliations / ORCID
Coffin J M
Varmus H E
Bishop J M
Essex M
Hardy W D
Martin G S
Rosenberg N E
Scolnick E M
Weinberg R A
Vogt P K
References (56)
56 references, click to expand
  1. Construction and isolation of a transmissible retrovirus containing the src gene of Harvey murine sarcoma virus and the thymidine kinase gene of herpes simplex virus type 1.
    J Virol. 1981 Sep;39(3):935-44 PMID: 6270359
  2. The pathogenicity and defectiveness of PRCII: a new type of avian sarcoma virus.
    Virology. 1981 Jan 15;108(1):1-12 PMID: 6168093
  3. Complete nucleotide sequence and organization of the Moloney murine sarcoma virus genome.
    Science. 1981 Oct 23;214(4519):445-50 PMID: 6170110
  4. Characteristics of avian sarcoma virus strain PRCIV and comparison with strain PRCII-p.
    Virology. 1981 Oct 30;114(2):451-62 PMID: 6270882
  5. Differences between the ribonucleic acids of transforming and nontransforming avian tumor viruses.
    Proc Natl Acad Sci U S A. 1970 Dec;67(4):1673-80 PMID: 4321342
  6. Tumor viruses: 1974.
    Cold Spring Harb Symp Quant Biol. 1975;39 Pt 2:1187-200 PMID: 50896
  7. Mapping RNase T1-resistant oligonucleotides of avian tumor virus RNAs: sarcoma-specific oligonucleotides are near the poly(A) end and oligonucleotides common to sarcoma and transformation-defective viruses are at the poly(A) end.
    J Virol. 1975 Oct;16(4):1051-70 PMID: 170411
  8. DNA related to the transforming gene(s) of avian sarcoma viruses is present in normal avian DNA.
    Nature. 1976 Mar 11;260(5547):170-3 PMID: 176594
  9. Defectiveness of avian myelocytomatosis virus MC29: isolation of long-term nonproducer cultures and analysis of virus-specific polypeptide synthesis.
    Virology. 1977 Oct 15;82(2):431-48 PMID: 199997
  10. Physical map of the Kirsten sarcoma virus genome as determined by fingerprinting RNase T1-resistant oligonucleotides.
    J Virol. 1978 Jan;25(1):238-52 PMID: 202738
  11. Feline oncornavirus-associated cell membrane antigen: evidence for an immunologically crossreactive feline sarcoma virus-coded protein.
    Proc Natl Acad Sci U S A. 1977 Dec;74(12):5608-12 PMID: 202959
  12. Identification of an Abelson murine leukemia virus-encoded protein present in transformed fibroblast and lymphoid cells.
    Proc Natl Acad Sci U S A. 1978 May;75(5):2488-92 PMID: 209468
  13. Retroviruses.
    Annu Rev Biochem. 1978;47:35-88 PMID: 354499
  14. The genome of the mammalian sarcoma viruses.
    Biochim Biophys Acta. 1978 Nov 17;516(3):249-68 PMID: 215207
  15. Avian leukemia viruses: interaction with their target cells in vivo and in vitro.
    Biochim Biophys Acta. 1978 Nov 17;516(3):269-99 PMID: 215208
  16. Recombination between viral and cellular sequences generates transforming sarcoma virus.
    Proc Natl Acad Sci U S A. 1978 Dec;75(12):5812-6 PMID: 215998
  17. Defectiveness of avian erythroblastosis virus: synthesis of a 75K gag-related protein.
    Virology. 1979 Jan 15;92(1):31-45 PMID: 217166
  18. Genome of avian myelocytomatosis virus MC29: analysis by heteroduplex mapping.
    Proc Natl Acad Sci U S A. 1979 Mar;76(3):1265-8 PMID: 86989
  19. Avian acute leukemia viruses MC29 and MH2 share specific RNA sequences: evidence for a second class of transforming genes.
    Proc Natl Acad Sci U S A. 1979 Apr;76(4):1633-7 PMID: 221900
  20. Identification of a sarcoma virus-coded phosphoprotein in nonproducer cells transformed by Kirsten or Harvey murine sarcoma virus.
    Virology. 1979 Jul 15;96(1):64-79 PMID: 223311
  21. Avian erythroblastosis virus: transformation-specific sequences form a contiguous segment of 3.25 kb located in the middle of the 6-kb genome.
    Virology. 1979 Sep;97(2):366-77 PMID: 224587
  22. DNA and RNA from uninfected vertebrate cells contain nucleotide sequences related to the putative transforming gene of avian myelocytomatosis virus.
    J Virol. 1979 Aug;31(2):514-21 PMID: 225569
  23. A normal cell protein cross-reactive to the major Abelson murine leukaemia virus gene product.
    Nature. 1979 Oct 4;281(5730):396-8 PMID: 90344
  24. Three new types of viral oncogene of cellular origin specific for haematopoietic cell transformation.
    Nature. 1979 Oct 11;281(5731):452-5 PMID: 226888
  25. Different rat-derived transforming retroviruses code for an immunologically related intracellular phosphoprotein.
    Proc Natl Acad Sci U S A. 1979 Jul;76(7):3523-7 PMID: 226970
  26. Heterogeneity of genetic loci in chickens: analysis of endogenous viral and nonviral genes by cleavage of DNA with restriction endonucleases.
    Cell. 1979 Oct;18(2):347-59 PMID: 227605
  27. Structure and specific sequences of avian erythroblastosis virus RNA: evidence for multiple classes of transforming genes among avian tumor viruses.
    Proc Natl Acad Sci U S A. 1979 Oct;76(10):5023-7 PMID: 228273
  28. Molecular cloning of the Harvey sarcoma virus closed circular DNA intermediates: initial structural and biological characterization.
    J Virol. 1979 Sep;31(3):795-809 PMID: 229252
  29. Transforming capacities and defectiveness of avian leukemia viruses OK10 and E 26.
    Virology. 1979 Dec;99(2):431-6 PMID: 229630
  30. The genomic RNA of avian reticuloendotheliosis virus REV.
    Virology. 1980 Jan 30;100(2):450-61 PMID: 6243435
  31. In vitro translation of avian erythroblastosis virus RNA: identification of two major polypeptides.
    Virology. 1980 Jan 30;100(2):484-7 PMID: 6243438
  32. The nonstructural components of polyproteins encoded by replication-defective mammalian transforming retroviruses are phosphorylated and have associated protein kinase activity.
    Virology. 1980 Feb;101(1):185-97 PMID: 6243819
  33. Biochemical and immunological characterization of polyproteins coded for by the McDonough, Gardner-Arnstein, and Snyder-Theilen strains of feline sarcoma virus.
    J Virol. 1980 Jan;33(1):196-207 PMID: 6154148
  34. Avian retroviruses that cause carcinoma and leukemia: identification of nucleotide sequences associated with pathogenicity.
    J Virol. 1980 Mar;33(3):962-8 PMID: 6245277
  35. Isolation of complementary DNA unique to the genome of avian myeloblastosis virus (AMV).
    Virology. 1980 May;103(1):112-22 PMID: 6245521
  36. Molecular cloning of Snyder-Theilen feline leukemia and sarcoma viruses: comparative studies of feline sarcoma virus with its natural helper virus and with Moloney murine sarcoma virus.
    J Virol. 1980 Apr;34(1):200-12 PMID: 6246254
  37. Cell-free translation of avian erythroblastosis virus RNA.
    J Virol. 1980 Apr;34(1):280-4 PMID: 6246260
  38. Fujinami sarcoma virus: an avian RNA tumor virus with a unique transforming gene.
    Proc Natl Acad Sci U S A. 1980 Apr;77(4):2018-22 PMID: 6246518
  39. Identification of a proviral genome associated with avian myeloblastic leukemia.
    Proc Natl Acad Sci U S A. 1980 May;77(5):3004-8 PMID: 6248880
  40. Characterization of the transforming gene of Fujinami sarcoma virus.
    Proc Natl Acad Sci U S A. 1980 May;77(5):3009-13 PMID: 6248881
  41. Recovered src genes are polymorphic and contain host markers.
    Virology. 1980 Aug;105(1):71-85 PMID: 6251613
  42. Analysis of cells transformed by defective leukemia virus OK10: production of noninfectious particles and synthesis of Pr76gag and an additional 200,000-dalton protein.
    Virology. 1980 Oct 15;106(1):71-81 PMID: 6158166
  43. The vertebrate homolog of the putative transforming gene of avian myelocytomatosis virus: characteristics of the DNA locus and its RNA transcript.
    Virology. 1980 Sep;105(2):415-24 PMID: 6158786
  44. Unifected avian cells contain structurally unrelated progenitors of viral sarcoma genes.
    Nature. 1980 Oct 16;287(5783):653-4 PMID: 6253807
  45. Genetic structure of avian myeloblastosis virus, released from transformed myeloblasts as a defective virus particle.
    Proc Natl Acad Sci U S A. 1980 Sep;77(9):5120-4 PMID: 6159639
  46. Characterization of Y73, an avian sarcoma virus: a unique transforming gene and its product, a phosphopolyprotein with protein kinase activity.
    Proc Natl Acad Sci U S A. 1980 Oct;77(10):6199-203 PMID: 6255480
  47. Nucleotide sequence and formation of the transforming gene of a mouse sarcoma virus.
    Nature. 1981 Jan 22;289(5795):258-62 PMID: 6256659
  48. Homology exists among the transforming sequences of avian and feline sarcoma viruses.
    Proc Natl Acad Sci U S A. 1980 Nov;77(11):6536-40 PMID: 6256742
  49. The genome and the intracellular RNAs of avian myeloblastosis virus.
    Cell. 1981 Jan;23(1):279-90 PMID: 6260378
  50. Virus-specific RNAs in cells infected by avian myelocytomatosis virus and avian erythroblastosis virus: modes of oncogene expression.
    Cell. 1981 Jan;23(1):291-300 PMID: 6260379
  51. Enemies within: the genesis of retrovirus oncogenes.
    Cell. 1981 Jan;23(1):5-6 PMID: 7214527
  52. Avian reticuloendotheliosis virus contains a new class of oncogene of turkey origin.
    Virology. 1981 May;111(1):289-93 PMID: 6263007
  53. Esh avian sarcoma virus codes for a gag-linked transformation-specific protein with an associated protein kinase activity.
    Virology. 1981 Jun;111(2):386-400 PMID: 6264667
  54. The p21 src genes of Harvey and Kirsten sarcoma viruses originate from divergent members of a family of normal vertebrate genes.
    Nature. 1981 Aug 6;292(5823):506-11 PMID: 6265801
  55. Molecular cloning and comparative analyses of the genomes of simian sarcoma virus and its associated helper virus.
    Proc Natl Acad Sci U S A. 1981 Jun;78(6):3373-7 PMID: 6267588
  56. Some biological properties of two new avian sarcoma viruses.
    J Virol. 1981 Oct;40(1):268-75 PMID: 6270379
Article Info
Journal
Journal of virology
Abbr.
J Virol
ISSN
0022-538X
Published
1981-12-00
Pages
953-7
Language
English
Region
United States
NLM ID
0113724
PMCID
PMC256709
Subset
IM
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