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PMID: 7015339 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Conformational activation of the yeast phenylalanyl-tRNA synthetase catalytic site induced by tRNAPhe interaction: triggering of adenosine or CpCpA trinucleoside diphosphate aminoacylation upon binding of tRNAPhe lacking these residues.

Renaud M, Bacha H, Remy P, Ebel JP

Abstract

Adenosine or CpCpA trinucleoside diphosphate can be aminoacylated by phenylalanyl-tRNA synthetase [L-phenylalanine:tRNAPhe ligase (AMP forming), EC 6.1.1.20] when the reaction takes place in the presence of tRNAPhe deprived of its 3' adenosine or pCpCpA terminus. This shows that, upon interaction with tRNA, a structural alteration of the enzyme's active site is achieved. This process may be a determining step in the specificity of the aminoacylation reaction.

MeSH Terms
Adenosine Amino Acyl-tRNA Synthetases/metabolism Binding Sites Oligonucleotides Phenylalanine-tRNA Ligase/metabolism Protein Binding RNA, Transfer/metabolism Saccharomyces cerevisiae/enzymology Substrate Specificity
Chemicals
Oligonucleotides cytidylyl-cytidylyl-adenosine RNA, Transfer Amino Acyl-tRNA Synthetases Phenylalanine-tRNA Ligase Adenosine
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Renaud M
Bacha H
Remy P
Ebel J P
References (26)
26 references, click to expand
  1. Sequential degradation of nucleic acids. Degradation of Escherichia coli B phenylalanine transfer ribonucleic acid.
    Biochemistry. 1969 Aug;8(8):3254-60 PMID: 4309204
  2. Separation of the phosphoric esters on the filter paper chromatogram.
    Nature. 1949 Dec 31;164(4183):1107-12, illust PMID: 15398090
  3. Incorrect aminoacylatins catalysed by the phenylalanyl-and valyl-tRNA synthetases from yeast.
    Eur J Biochem. 1972 Nov 21;31(1):148-55 PMID: 4565518
  4. Three-dimensional tertiary structure of yeast phenylalanine transfer RNA.
    Science. 1974 Aug 2;185(4149):435-40 PMID: 4601792
  5. Structure of yeast phenylalanine tRNA at 3 A resolution.
    Nature. 1974 Aug 16;250(467):546-51 PMID: 4602655
  6. Studies on tRNA nucleotidyltransferase from baker's yeast. 1. Purification of the enzyme. Protection against thermal inactivation and inhibition by several substrates.
    Eur J Biochem. 1974 Dec 16;50(1):281-8 PMID: 4615903
  7. Study of the role of the acceptor stem in the interactions between tRNAs and aminoacyl-tRNA synthetases.
    Nucleic Acids Res. 1975 Feb;2(2):211-21 PMID: 1091915
  8. Yeast phenylalanyl-tRNA synthetase. Stoichiometry of the phenylalanyl adenylate-enzyme complex and transfer of phenylalanine from this complex to tRNA-PHE.
    Eur J Biochem. 1974 Nov 1;49(1):257-63 PMID: 4617679
  9. Modification of phenylalanyl-tRNA synthetase from baker's yeast by proteolytic cleavage and properties of the trypsin-modified enzyme.
    Eur J Biochem. 1975 May 6;53(2):487-92 PMID: 166841
  10. Amino-acid incorporation into tRNA fragments and into heterologous combinations of fragments.
    Eur J Biochem. 1975 Nov 15;59(2):405-13 PMID: 1107030
  11. On the interaction of seryl-tRNA synthetase with tRNA Ser. A contribution to the problem of synthetase-tRNA recognition.
    Eur J Biochem. 1976 May 17;65(1):307-15 PMID: 776629
  12. Circular dichroism study of the interaction of glutamyl-tRNA synthetase with tRNAGlu2.
    Biochemistry. 1976 Sep 21;15(19):4347-52 PMID: 786370
  13. Mechanism of discrimination between cognate and non-cognate tRNAs by phenylalanyl-tRNA synthetase from yeast.
    Eur J Biochem. 1976 Sep;68(1):81-93 PMID: 9288
  14. Yeast phenylalanyl--tRNA synthetase. Stimulation of the hydrolysis of enzyme bound aminoacyladenylate upon binding of tRNA.
    FEBS Lett. 1977 Jul 1;79(1):117-20 PMID: 330220
  15. Structural organization of complexes of transfer RNAs with aminoacyl transfer RNA synthetases.
    Nucleic Acids Res. 1977;4(5):1649-65 PMID: 331261
  16. Reaction pathway and rate-determining step in the aminoacylation of tRNAArg catalyzed by the arginyl-tRNA synthetase from yeast.
    Biochemistry. 1978 Sep 5;17(18):3740-6 PMID: 359044
  17. Methionyl-tRNA synthetase from Escherichia coli. Inactivation and labeling by periodate-treated initiator tRNA.
    Eur J Biochem. 1979 May 2;96(1):87-92 PMID: 222589
  18. Interactions of yeast valyl-tRNA synthetase with RNAs and conformational changes of the enzyme.
    J Mol Biol. 1979 Apr 15;129(3):483-500 PMID: 379352
  19. Phenylalanyl-tRNA synthetase induced conformational change of Escherichia coli tRNA phe.
    Biochemistry. 1979 Jun 26;18(13):2887-95 PMID: 383142
  20. Lack of correlation between affinity of the tRNA for the aminoacyl-tRNA synthetase and aminoacylation capacity as studied with modified tRNAPhe.
    Eur J Biochem. 1979 Oct;100(1):157-64 PMID: 385310
  21. The -C-C-A end of tRNA and its role in protein biosynthesis.
    Prog Nucleic Acid Res Mol Biol. 1979;22:1-69 PMID: 392600
  22. Fluorimetric study of the complex between yeast phenylalanyl-tRNA synthetase and tRNA-Phe. 1. Changes in the conformation of the enzyme and tRNA; modification of the Wybutine neighbourhood.
    Eur J Biochem. 1980 Jan;103(1):145-53 PMID: 6987055
  23. The catalytic mechanism of glutamyl-tRNA synthetase of Escherichia coli. Evidence for a two-step aminoacylation pathway, and study of the reactivity of the intermediate complex.
    Eur J Biochem. 1980 May;106(1):137-50 PMID: 6280993
  24. The purine and pyrimidine composition of deoxypentose nucleic acids.
    Biochem J. 1951 May;48(5):584-90 PMID: 14838906
  25. Esterification of adenosine triphosphate by enzymically formed and synthetic tryptophanyl adenylate.
    Arch Biochem Biophys. 1959 Jul;83(1):101-14 PMID: 13661997
  26. Reaction of tris-(hydroxymethyl)-aminomethane with valyl-TYMV-RNA.
    Biochimie. 1971;53(8):887-91 PMID: 5148875
Article Info
Journal
Proceedings of the National Academy of Sciences of the United States of America
Abbr.
Proc Natl Acad Sci U S A
ISSN
0027-8424
Published
1981-03-00
Pages
1606-8
Language
English
Region
United States
NLM ID
7505876
PMCID
PMC319180
Subset
IM
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