Home LiteratureArticle Details
PMID: 6461856 Published · ppublish English Journal Article Research Support, U.S. Gov't, Non-P.H.S. Research Support, U.S. Gov't, P.H.S.

Quantitative model for gene regulation by lambda phage repressor.

Ackers GK, Johnson AD, Shea MA

Abstract

A statistical thermodynamic model has been developed to account for the cooperative interactions of the bacteriophage lambda repressor with the lambda right operator. The model incorporates a general theory for quantitatively interpreting cooperative site-specific equilibrium binding data. Values for all interaction parameters of the model have been evaluated at 37 degrees C, 0.2 M KCl, from results of DNase protection experiments in vitro [A. D. Johnson, B. J. Meyer, & M. Ptashne, Proc. Natl. Acad. Sci. USA (1979) 76, 5061-5065]. With these values, the model predicts repression curves at the divergent promoters PR and PRM that control transcription of genes coding for the regulatory proteins cro and repressor, respectively. At physiological repressor concentrations, repression at PR is predicted to be nearly complete whereas PRM is predicted to remain highly active. The results demonstrate the importance of cooperative interactions between repressor dimers bound to the adjacent operator sites OR1 and OR2 in maintaining a stable lysogenic state and in allowing efficient switchover to the lytic state during induction.

MeSH Terms
Bacteriophage lambda/genetics DNA-Binding Proteins Gene Expression Regulation Genes, Viral Lysogeny Mathematics Models, Genetic Operon Repressor Proteins/physiology Transcription Factors/physiology Viral Proteins Viral Regulatory and Accessory Proteins Virus Activation
Chemicals
DNA-Binding Proteins Repressor Proteins Transcription Factors Viral Proteins Viral Regulatory and Accessory Proteins phage repressor proteins
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Ackers G K
Johnson A D
Shea M A
References (23)
23 references, click to expand
  1. Active form of two coliphage repressors.
    Nature. 1970 Jul 4;227(5253):41-4 PMID: 5422623
  2. Control of lambda repressor synthesis.
    Proc Natl Acad Sci U S A. 1971 Sep;68(9):2185-9 PMID: 4943790
  3. Theoretical aspects of DNA-protein interactions: co-operative and non-co-operative binding of large ligands to a one-dimensional homogeneous lattice.
    J Mol Biol. 1974 Jun 25;86(2):469-89 PMID: 4416620
  4. Non-specific DNA binding of genome regulating proteins as a biological control mechanism: I. The lac operon: equilibrium aspects.
    Proc Natl Acad Sci U S A. 1974 Dec;71(12):4808-12 PMID: 4612528
  5. A rapid method for determining sequences in DNA by primed synthesis with DNA polymerase.
    J Mol Biol. 1975 May 25;94(3):441-8 PMID: 1100841
  6. Oxygenation-linked subunit interactions in human hemoglobin: analysis of linkage functions for constituent energy terms.
    Biochemistry. 1976 Nov 30;15(24):5363-71 PMID: 999812
  7. On the analysis of linear binding effects associated with curved Scatchard plots.
    Biophys Chem. 1976 Dec;6(1):65-76 PMID: 1016685
  8. A new method for sequencing DNA.
    Proc Natl Acad Sci U S A. 1977 Feb;74(2):560-4 PMID: 265521
  9. Nonspecific DNA binding of genome-regulating proteins as a biological control mechanism: measurement of DNA-bound Escherichia coli lac repressor in vivo.
    Proc Natl Acad Sci U S A. 1977 Oct;74(10):4228-32 PMID: 412185
  10. DNAse footprinting: a simple method for the detection of protein-DNA binding specificity.
    Nucleic Acids Res. 1978 Sep;5(9):3157-70 PMID: 212715
  11. Cooperative and non-cooperative binding of large ligands to a finite one-dimensional lattice. A model for ligand-oligonucleotide interactions.
    Biophys Chem. 1978 Sep;8(4):327-39 PMID: 728537
  12. Interactions between DNA-bound repressors govern regulation by the lambda phage repressor.
    Proc Natl Acad Sci U S A. 1979 Oct;76(10):5061-5 PMID: 159452
  13. Inactivation of prophage lambda repressor in vivo.
    J Mol Biol. 1979 Jul 5;131(3):553-72 PMID: 159955
  14. How the lambda repressor and cro work.
    Cell. 1980 Jan;19(1):1-11 PMID: 6444544
  15. The lexA gene product represses its own promoter.
    Proc Natl Acad Sci U S A. 1980 Apr;77(4):1932-6 PMID: 6990417
  16. Gene regulation at the right operator (OR) bacteriophage lambda. I. OR3 and autogenous negative control by repressor.
    J Mol Biol. 1980 May 15;139(2):147-61 PMID: 6447794
  17. Gene regulation at the right operator (OR) of bacteriophage lambda. II. OR1, OR2, and OR3: their roles in mediating the effects of repressor and cro.
    J Mol Biol. 1980 May 15;139(2):163-94 PMID: 6447795
  18. Gene regulation at the right operator (OR) of bacteriophage lambda. III. lambda repressor directly activates gene transcription.
    J Mol Biol. 1980 May 15;139(2):195-205 PMID: 6447796
  19. The Escherichia coli L-arabinose operon: binding sites of the regulatory proteins and a mechanism of positive and negative regulation.
    Proc Natl Acad Sci U S A. 1980 Jun;77(6):3346-50 PMID: 6251457
  20. Rate-limiting steps in RNA chain initiation.
    Proc Natl Acad Sci U S A. 1980 Oct;77(10):5634-8 PMID: 6160577
  21. Model for lactose repressor protein and its interaction with ligands.
    Proc Natl Acad Sci U S A. 1980 Dec;77(12):7181-5 PMID: 6938962
  22. Mechanism of araC autoregulation and the domains of two overlapping promoters, Pc and PBAD, in the L-arabinose regulatory region of Escherichia coli.
    Proc Natl Acad Sci U S A. 1981 Feb;78(2):752-6 PMID: 6262769
  23. lambda Repressor and cro--components of an efficient molecular switch.
    Nature. 1981 Nov 19;294(5838):217-23 PMID: 6457992
Article Info
Journal
Proceedings of the National Academy of Sciences of the United States of America
Abbr.
Proc Natl Acad Sci U S A
ISSN
0027-8424
Published
1982-02-00
Pages
1129-33
Language
English
Region
United States
NLM ID
7505876
PMCID
PMC345914
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com