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PMID: 6440121 Published · ppublish English Journal Article

Partial methylation of two adjacent adenosines in ribosomes from Euglena gracilis chloroplasts suggests evolutionary loss of an intermediate stage in the methyl-transfer reaction.

Nucleic acids research ·Vol. 12 ·No. 23 ·1984-12-11 ·Pages 9205-8

Van Buul CP, Hamersma M, Visser W, Van Knippenberg PH

Abstract

Bacterial, cytoplasmic and organellar ribosomes from a wide phylogenetic spectrum of organisms have a characteristic m6(2)Am6(2)A structure near the 3' end of the RNA of the small ribosomal subunit (SSU). We have studied one of the few exceptions to this extremely conserved post-transcriptionally modified sequence, i.e. dimethylation of only one of the two A's in chloroplasts from Euglena gracilis. It was established that only the A closest to the 5' end is dimethylated, the other one being unmodified. The methylation reaction was studied in vitro using ribosomes from a kasugamycin resistant mutant (ksgA) of Escherichia coli and purified methyl-transferase. Using limited amounts of the methyl donor S-adenosylmethionine (SAM) a partial level of methylation (50% of control) was attained. It is shown that in this case the 3' proximal A is dimethylated while the other is not. This suggests that dimethylation takes place in two successive stages. Apparently in E. gracilis chloroplasts the first stage of methylation does not occur.

MeSH Terms
Adenine/analogs & derivatives,analysis Adenosine/analysis Biological Evolution Chloroplasts/metabolism Cloacin Escherichia coli/genetics Euglena gracilis/genetics Methylation Methyltransferases/metabolism RNA Processing, Post-Transcriptional RNA, Ribosomal/genetics Ribosomes/metabolism,ultrastructure
Chemicals
RNA, Ribosomal Cloacin N(6),N(6)-dimethyladenine Methyltransferases Adenine Adenosine
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Van Buul C P
Hamersma M
Visser W
Van Knippenberg P H
References (17)
17 references, click to expand
  1. Change in methylation of 16S ribosomal RNA associated with mutation to kasugamycin resistance in Escherichia coli.
    Nat New Biol. 1971 Sep 1;233(35):12-4 PMID: 4329247
  2. Collection of published 5S and 5.8S ribosomal RNA sequences.
    Nucleic Acids Res. 1984;12 Suppl:r133-66 PMID: 6728686
  3. The 3'-terminus of 16 S ribosomal RNA of Escherichia coli. Isolation and purification of the terminal 49-nucleotide fragment at a milligram scale.
    FEBS Lett. 1976 Dec 1;71(2):351-5 PMID: 793864
  4. Mapping adenines, guanines, and pyrimidines in RNA.
    Nucleic Acids Res. 1977 Aug;4(8):2527-38 PMID: 409999
  5. Studies on the function of two adjacent N6,N6-dimethyladenosines near the 3' end of 16 S ribosomal RNA of Escherichia coli. I. The effect of kasugamycin on initiation of protein synthesis.
    J Biol Chem. 1979 Sep 25;254(18):9085-9 PMID: 383710
  6. Studies on the function of two adjacent N6,N6-dimethyladenosines near the 3' end of 16 S ribosomal RNA of Escherichia coli. III. Purification and properties of the methylating enzyme and methylase-30 S interactions.
    J Biol Chem. 1979 Sep 25;254(18):9094-100 PMID: 383712
  7. Euglena gracilis chloroplast ribosomal RNA transcription units. II. Nucleotide sequence homology between the 16 S--23 S ribosomal RNA spacer and the 16 S ribosomal RNA leader regions.
    J Biol Chem. 1980 Nov 25;255(22):10997-1003 PMID: 6253497
  8. Euglena gracilis chloroplast ribosomes: improved isolation procedure and comparison of elongation factor specificity with prokaryotic and eukaryotic ribosomes.
    Arch Biochem Biophys. 1980 Oct 15;204(2):444-54 PMID: 6778393
  9. Adenosine dimethylation of 16S ribosomal RNA: effect of the methylgroups on local conformational stability as deduced from electrophoretic mobility of RNA fragments in denaturing polyacrylamide gels.
    Nucleic Acids Res. 1981 Jan 24;9(2):267-75 PMID: 7010312
  10. Has the endosymbiont hypothesis been proven?
    Microbiol Rev. 1982 Mar;46(1):1-42 PMID: 6178009
  11. Euglena gracilis chloroplast small subunit rRNA. Sequence and base pairing potential of the 3' terminus, cleavage by colicin E3.
    J Biol Chem. 1982 Sep 10;257(17):10430-9 PMID: 6809748
  12. Nucleotide sequence of a Euglena gracilis chloroplast gene coding for the 16S rRNA: homologies to E. coli and Zea mays chloroplast 16S rRNA.
    Nucleic Acids Res. 1982 Oct 25;10(20):6369-81 PMID: 6294602
  13. Comparison of initiation of protein synthesis in procaryotes, eucaryotes, and organelles.
    Microbiol Rev. 1983 Mar;47(1):1-45 PMID: 6343825
  14. Kasugamycin resistant mutants of Bacillus stearothermophilus lacking the enzyme for the methylation of two adjacent adenosines in 16S ribosomal RNA.
    Mol Gen Genet. 1983;189(3):475-8 PMID: 6575236
  15. Detailed analysis of the higher-order structure of 16S-like ribosomal ribonucleic acids.
    Microbiol Rev. 1983 Dec;47(4):621-69 PMID: 6363901
  16. Phylogeny of the conserved 3' terminal structure of the RNA of small ribosomal subunits.
    Nucleic Acids Res. 1984 Mar 26;12(6):2595-604 PMID: 6709501
  17. Minimal post-transcriptional modification of yeast mitochondrial ribosomal RNA.
    J Mol Biol. 1975 Sep 25;97(3):337-50 PMID: 1102710
Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
0305-1048
Published
1984-12-11
Pages
9205-8
Language
English
Region
England
NLM ID
0411011
PMCID
PMC320449
Subset
IM
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