Home LiteratureArticle Details
PMID: 6278445 Published · ppublish English Journal Article Research Support, U.S. Gov't, P.H.S.

DNase I hypersensitive sites of the chromatin for Drosophila melanogaster ribosomal protein 49 gene.

Nucleic acids research ·Vol. 9 ·No. 24 ·1981-12-21 ·Pages 6749-62

Wong YC, O'Connell P, Rosbash M, Elgin SC

Abstract

By using an indirect end-labelling technique for mapping, five DNase I hypersensitive sites have been located in Drosophila melanogaster chromatin at the 5'-end of the gene coding for ribosomal protein 49. These sites typically span about 100-600 base pairs and are approximately the length of a nucleosome apart (center to center distance ca 245 bp). This is the first analysis of the chromatin structure of a constitutive house-keeping gene. The results support the hypothesis that the presence of such a DNase 1 hypersensitive site in chromatin is necessary for transcription in vivo. The presence of such sites may reflect some local changes in the conformation of the chromatin in the presumptive regulatory region.

MeSH Terms
Animals Binding Sites Chromatin/isolation & purification,metabolism Cloning, Molecular Deoxyribonuclease I Deoxyribonucleases Drosophila melanogaster/genetics Endonucleases Gene Expression Regulation Molecular Conformation Ribosomal Proteins/genetics
Chemicals
Chromatin Ribosomal Proteins ribosomal protein 49 Deoxyribonucleases Endonucleases Deoxyribonuclease I
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Wong Y C
O'Connell P
Rosbash M
Elgin S C
References (26)
26 references, click to expand
  1. Supercoiled circular DNA-protein complex in Escherichia coli: purification and induced conversion to an opern circular DNA form.
    Proc Natl Acad Sci U S A. 1969 Apr;62(4):1159-66 PMID: 4894690
  2. Proteolytic cleavage fo native DNA polymerase into two different catalytic fragments. Influence of assay condtions on the change of exonuclease activity and polymerase activity accompanying cleavage.
    Eur J Biochem. 1971 Oct 14;22(3):371-81 PMID: 4942147
  3. Chromatin sub-structure. The digestion of chromatin DNA at regularly spaced sites by a nuclear deoxyribonuclease.
    Biochem Biophys Res Commun. 1973 May 15;52(2):504-10 PMID: 4711166
  4. Chromosomal subunits in active genes have an altered conformation.
    Science. 1976 Sep 3;193(4256):848-56 PMID: 948749
  5. A new method for sequencing DNA.
    Proc Natl Acad Sci U S A. 1977 Feb;74(2):560-4 PMID: 265521
  6. Spliced early mRNAs of simian virus 40.
    Proc Natl Acad Sci U S A. 1978 Mar;75(3):1274-8 PMID: 206891
  7. pBR322 restriction map derived from the DNA sequence: accurate DNA size markers up to 4361 nucleotide pairs long.
    Nucleic Acids Res. 1978 Aug;5(8):2721-8 PMID: 358147
  8. The isolation of structural genes from libraries of eucaryotic DNA.
    Cell. 1978 Oct;15(2):687-701 PMID: 719759
  9. Sites in simian virus 40 chromatin which are preferentially cleaved by endonucleases.
    Cell. 1978 Dec;15(4):1511-8 PMID: 215331
  10. A stretch of "late" SV40 viral DNA about 400 bp long which includes the origin of replication is specifically exposed in SV40 minichromosomes.
    Cell. 1979 Feb;16(2):453-66 PMID: 222461
  11. The chromatin structure of specific genes: I. Evidence for higher order domains of defined DNA sequence.
    Cell. 1979 Apr;16(4):797-806 PMID: 455449
  12. Improved methods for the formation and stabilization of R-loops.
    Nucleic Acids Res. 1979 Jun 11;6(7):2499-317 PMID: 379821
  13. Isolation of cloned DNA sequences containing ribosomal protein genes from Saccharomyces cerevisiae.
    Cell. 1979 Dec;18(4):1247-59 PMID: 391408
  14. DNA methylation: correlation with DNase I sensitivity of chicken ovalbumin and conalbumin chromatin.
    Nucleic Acids Res. 1979 Dec 20;7(8):2105-13 PMID: 523315
  15. Detection of specific RNAs or specific fragments of DNA by fractionation in gels and transfer to diazobenzyloxymethyl paper.
    Methods Enzymol. 1979;68:220-42 PMID: 94421
  16. A nucleosome-free region in SV40 minichromosomes.
    Nature. 1980 May 22;285(5762):263-5 PMID: 6246449
  17. Absence of nucleosomes in a fraction of SV40 chromatin between the origin of replication and the region coding for the late leader RNA.
    Cell. 1980 May;20(1):65-73 PMID: 6248237
  18. Tissue-specific DNA cleavages in the globin chromatin domain introduced by DNAase I.
    Cell. 1980 Jun;20(2):451-60 PMID: 7388947
  19. Isolation and mapping of a cloned ribosomal protein gene of Drosophila melanogaster.
    Nature. 1980 Jun 26;285(5767):674-6 PMID: 6771656
  20. The 5' ends of Drosophila heat shock genes in chromatin are hypersensitive to DNase I.
    Nature. 1980 Aug 28;286(5776):854-60 PMID: 6774262
  21. The isolation and characterization of Drosophila yolk protein genes.
    Cell. 1980 Oct;21(3):729-38 PMID: 6777047
  22. Expression of ribosomal proteins during Drosophila early development.
    Proc Natl Acad Sci U S A. 1980 Oct;77(10):5649-53 PMID: 6777772
  23. Chromatin structure of the histone genes of D. melanogaster.
    Cell. 1981 Feb;23(2):401-9 PMID: 6258802
  24. Alpha-Globin-gene switching during the development of chicken embryos: expression and chromosome structure.
    Cell. 1981 May;24(2):333-44 PMID: 7237551
  25. Activation of globin genes during chicken development.
    Cell. 1981 May;24(2):393-401 PMID: 7237553
  26. DNase I hypersensitive sites in Drosophila chromatin occur at the 5' ends of regions of transcription.
    Proc Natl Acad Sci U S A. 1981 Jan;78(1):143-6 PMID: 6264428
Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
0305-1048
Published
1981-12-21
Pages
6749-62
Language
English
Region
England
NLM ID
0411011
PMCID
PMC327638
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com