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PMID: 6251236 Published · ppublish English Comparative Study Journal Article

Polyoma virus DNA: Sequence from the late region that specifies the leader sequence for late mRNA and codes for VP2, VP3, and the N-terminus of VP1.

Journal of virology ·Vol. 33 ·No. 2 ·1980-02-00 ·Pages 606-18

Arrand JR, Soeda E, Walsh JE, Smolar N, Griffin BE

Abstract

The DNA sequence of part of the late region of the polyoma virus genome is presented. This sequence of 1,348 nucleotide pairs encompasses the leader region for late mRNA and the coding sequence for the two minor capsid proteins VP2 and VP3. The coding sequence for the N-terminus of the major capsid protein overlaps the C-terminus of VP2/VP3 by 32 nucleotide pairs. From the DNA sequence the sizes and sequences of VP2 and VP3 could be predicted. Potential splicing signals for the processing of late mRNA's could be identified. Comparisons are made between the sequence of polyoma virus DNA and corresponding regions of simian virus 40 DNA.

MeSH Terms
Amino Acid Sequence Base Sequence Capsid/genetics DNA Restriction Enzymes DNA, Viral/analysis Polyomavirus/genetics RNA, Messenger/genetics RNA, Viral/genetics Simian virus 40/genetics Viral Proteins/genetics
Chemicals
DNA, Viral RNA, Messenger RNA, Viral Viral Proteins DNA Restriction Enzymes
Authors & Affiliations
5 authors, click to expand affiliations / ORCID
Arrand J R
Soeda E
Walsh J E
Smolar N
Griffin B E
References (48)
48 references, click to expand
  1. The cleavage of polyoma virus DNA by restriction enzymes KpnI and PstI.
    J Gen Virol. 1976 Jun;31(3):315-21 PMID: 180247
  2. Topography of polyoma virus messenger RNA molecules.
    Cell. 1976 Mar;7(3):361-71 PMID: 181143
  3. Location of the sequences coding for capsid proteins VP1 and VP2 on polyoma virus DNA.
    Cell. 1976 Nov;9(3):481-7 PMID: 186193
  4. Restriction endonucleases.
    CRC Crit Rev Biochem. 1976 Nov;4(2):123-64 PMID: 795607
  5. A new method for sequencing DNA.
    Proc Natl Acad Sci U S A. 1977 Feb;74(2):560-4 PMID: 265521
  6. Organization of the genomes of polyoma virus and SV40.
    Adv Cancer Res. 1977;24:67-113 PMID: 192059
  7. Selective extraction of polyoma DNA from infected mouse cell cultures.
    J Mol Biol. 1967 Jun 14;26(2):365-9 PMID: 4291934
  8. Enzymatic synthesis of deoxyribonucleic acid. XXV. Purification and properties of deoxyribonucleic acid polymerase induced by infection with phage T4.
    J Biol Chem. 1968 Feb 10;243(3):627-38 PMID: 4866523
  9. Nucleotide sequence of the gene coding for the bacteriophage MS2 coat protein.
    Nature. 1972 May 12;237(5350):82-8 PMID: 4555447
  10. Isolation and partial characterization of different defective DNA molecules derived from polyoma virus.
    J Virol. 1974 May;13(5):939-46 PMID: 4363255
  11. The 3'-terminal sequence of Escherichia coli 16S ribosomal RNA: complementarity to nonsense triplets and ribosome binding sites.
    Proc Natl Acad Sci U S A. 1974 Apr;71(4):1342-6 PMID: 4598299
  12. Polyoma DNA: a physical map.
    Proc Natl Acad Sci U S A. 1974 May;71(5):2077-81 PMID: 4365585
  13. Nucleotide sequence of an RNA polymerase binding site at an early T7 promoter.
    Proc Natl Acad Sci U S A. 1975 Mar;72(3):784-8 PMID: 1093168
  14. An electron microscopic method for studying and mapping the region of weak sequence homology between simian virus 40 and polyoma DNAs.
    J Mol Biol. 1975 May 15;94(2):135-49 PMID: 167178
  15. Nonhistone virion proteins of polyoma: characterisation of the particle proteins by tryptic peptide analysis by use of ion-exchange columns.
    Virology. 1975 Aug;66(2):408-19 PMID: 168684
  16. Extent of terminal repetition in adenovirus 2 DNA.
    Cold Spring Harb Symp Quant Biol. 1975;39 Pt 1:401-7 PMID: 50907
  17. Polyoma virus--a study of wild-type, mutant and defective DNAs.
    Cold Spring Harb Symp Quant Biol. 1975;39 Pt 1:45-52 PMID: 169088
  18. Orientation of the complementary strands of polyoma virus DNA with respect to the DNA physical map.
    J Virol. 1975 Jan;17(1):212-8 PMID: 173885
  19. Construction of the genetic map of the polyoma genome.
    J Virol. 1976 Jun;18(3):824-32 PMID: 178924
  20. Nucleotide sequence of bacteriophage phi X174 DNA.
    Nature. 1977 Feb 24;265(5596):687-95 PMID: 870828
  21. Correlation between genetic loci and structural differences in the capsid proteins of polyoma virus plaque morphology mutants.
    Cell. 1977 Jun;11(2):331-8 PMID: 196761
  22. Overlapping of the VP2-VP3 gene and the VP1 gene in the SV40 genome.
    Cell. 1977 Oct;12(2):529-38 PMID: 199354
  23. DNA sequencing with chain-terminating inhibitors.
    Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463-7 PMID: 271968
  24. Fine structure of polyoma virus DNA.
    J Mol Biol. 1977 Dec 5;117(2):447-71 PMID: 203697
  25. Complete nucleotide sequence of SV40 DNA.
    Nature. 1978 May 11;273(5658):113-20 PMID: 205802
  26. The genome of simian virus 40.
    Science. 1978 May 5;200(4341):494-502 PMID: 205947
  27. The 5'-terminal leader sequence of late 16 S mRNA from cells infected with simian virus 40.
    J Biol Chem. 1978 May 25;253(10):3643-7 PMID: 206548
  28. Conservation of the primary structure at the 3' end of 18S rRNA from eucaryotic cells.
    Cell. 1978 Mar;13(3):551-63 PMID: 77738
  29. BK virus DNA: cleavage map and sequence analysis.
    Proc Natl Acad Sci U S A. 1978 May;75(5):2150-4 PMID: 209454
  30. Polyoma virus has three late mRNA's: one for each virion protein.
    J Virol. 1978 Aug;27(2):427-31 PMID: 211268
  31. Evolution of overlapping genes.
    Nature. 1978 Apr 6;272(5653):532-5 PMID: 692657
  32. Nucleotide sequence of bacteriophage G4 DNA.
    Nature. 1978 Nov 16;276(5685):236-47 PMID: 714153
  33. Coincidence of the promoter and capped 5' terminus of RNA from the adenovirus 2 major late transcription unit.
    Cell. 1978 Dec;15(4):1463-75 PMID: 729003
  34. Ovalbumin gene: evidence for a leader sequence in mRNA and DNA sequences at the exon-intron boundaries.
    Proc Natl Acad Sci U S A. 1978 Oct;75(10):4853-7 PMID: 283395
  35. Heterogeneity and 5'-terminal structures of the late RNAs of simian virus 40.
    J Mol Biol. 1978 Dec 25;126(4):813-46 PMID: 218021
  36. A map of the sites in the polyoma genome cleaved by endonuclease Alul.
    Virology. 1979 Jan 30;92(2):482-94 PMID: 218356
  37. The nucleotide sequences at the termini of adenovirus-2 DNA.
    J Mol Biol. 1979 Mar 15;128(4):577-94 PMID: 318164
  38. The use of exonuclease III for preparing single stranded DNA for use as a template in the chain terminator sequencing method.
    Nucleic Acids Res. 1979 Mar;6(3):831-48 PMID: 440973
  39. Organisation and sequences at the 5' end of a cloned complete ovalbumin gene.
    Nature. 1979 Mar 29;278(5703):428-34 PMID: 450048
  40. Multiple 5' terminal cap structures in late polyoma virus RNA.
    Cell. 1979 Feb;16(2):357-71 PMID: 222458
  41. Amplification in the leader sequence of late polyoma virus mRNAs.
    Cell. 1979 Feb;16(2):373-88 PMID: 222459
  42. Sequence from early region of polyoma virus DNA containing viral replication origin and encoding small, middle and (part of) large T antigens.
    Cell. 1979 Jun;17(2):357-70 PMID: 222480
  43. BKV splice sequences based on analysis of preferred donor and acceptor sites.
    Nucleic Acids Res. 1979 Jul 25;6(10):3387-98 PMID: 225729
  44. The binding of ribosomes to polyoma virus RNA. Possible role of the leader region in initiation site recognition.
    J Mol Biol. 1979 Oct 25;134(2):219-40 PMID: 231667
  45. Polyoma virus DNA: complete nucleotide sequence of the gene which codes for polyoma virus capsid protein VP1 and overlaps the VP2/VP3 genes.
    J Virol. 1980 Feb;33(2):619-30 PMID: 6251237
  46. Partial amino-terminal sequences of the polyoma nonhistone proteins VP1, VP2, and VP3 synthesized in vitro.
    J Virol. 1980 Feb;33(2):631-6 PMID: 6251238
  47. Topography of the three late mRNA's of polyoma virus which encode the virion proteins.
    J Virol. 1980 Feb;33(2):637-51 PMID: 6251239
  48. Localization of three major cappe 5' ends of polyoma virus late mRNA's within a single tetranucleotide sequence in the viral genome.
    J Virol. 1980 Feb;33(2):902-8 PMID: 6251254
Article Info
Journal
Journal of virology
Abbr.
J Virol
ISSN
0022-538X
Published
1980-02-00
Pages
606-18
Language
English
Region
United States
NLM ID
0113724
PMCID
PMC288585
Subset
IM
Databases
GENBANK
J02288, J02290, J02291, J02292, K00932, K00997, K01041, K01071, K01072, V01117, V01147
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