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PMID: 6198633 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

DNA binding and antigenic specifications of DNA gyrase.

Nucleic acids research ·Vol. 12 ·No. 2 ·1984-01-25 ·Pages 901-14

Lother H, Lurz R, Orr E

Abstract

Complexes of DNA gyrase and minichromosomal DNA containing the origin of replication of Escherichia coli (oriC) can be formed without metabolic energy and visualised by electron microscopy. The A subunit, part of the A2B2-DNA gyrase complex is the binding protein. Various binding sites are scattered around the minichromosomal DNA including oriC. The minimal origin contains the only prominent and reproducible binding site. Binding to this site is suppressed by oxolinic acid and the ATP analogue beta-y-imido ATP. If gyrase isolated from the gram-positive bacterium Bacillus subtilis is used no binding to oriC is seen. This observation is consistent with antigenic differences between the A subunits of the two microorganisms. The binding to oriC might reflect a requirement for DNA gyrase during the initiation of DNA replication.

MeSH Terms
Antigen-Antibody Complex Bacillus subtilis/enzymology Base Sequence DNA DNA Topoisomerases, Type II/genetics,metabolism Epitopes/analysis Escherichia coli/enzymology Macromolecular Substances Microscopy, Electron Nucleic Acid Hybridization Protein Binding Substrate Specificity
Chemicals
Antigen-Antibody Complex Epitopes Macromolecular Substances DNA DNA Topoisomerases, Type II
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Lother H
Lurz R
Orr E
References (33)
33 references, click to expand
  1. Escherichia coli mutants thermosensitive for deoxyribonucleic acid gyrase subunit A: effects on deoxyribonucleic acid replication, transcription, and bacteriophage growth.
    J Bacteriol. 1979 Nov;140(2):424-35 PMID: 227840
  2. Purification of the E. coli dnaA gene product.
    EMBO J. 1982;1(12):1545-9 PMID: 6327277
  3. DNA gyrase and the supercoiling of DNA.
    Science. 1980 Feb 29;207(4434):953-60 PMID: 6243420
  4. Isolation and characterisation of a strain carrying a conditional lethal mutation in the cou gene of Escherichia coli K12.
    Mol Gen Genet. 1979;177(1):103-12 PMID: 94144
  5. Covalent bonds between protein and DNA. Formation of phosphotyrosine linkage between certain DNA topoisomerases and DNA.
    J Biol Chem. 1980 Jun 25;255(12):5560-5 PMID: 6155377
  6. Replication origin of the Escherichia coli K-12 chromosome: the size and structure of the minimum DNA segment carrying the information for autonomous replication.
    Mol Gen Genet. 1980 Apr;178(1):9-20 PMID: 6991883
  7. DNA gyrase subunit stoichiometry and the covalent attachment of subunit A to DNA during DNA cleavage.
    Nucleic Acids Res. 1980 Sep 11;8(17):3865-74 PMID: 6255421
  8. Deoxyribonucleic acid gyrase-deoxyribonucleic acid complex containing 140 base pairs of deoxyribonucleic acid and an alpha 2 beta 2 protein core.
    Biochemistry. 1980 Nov 11;19(23):5229-34 PMID: 6255987
  9. An Escherichia coli mutant thermosensitive in the B subunit of DNA gyrase: effect on the structure and replication of the colicin E1 plasmid in vitro.
    Mol Gen Genet. 1981;181(1):52-6 PMID: 6261085
  10. Mapping the topography of DNA wrapped around gyrase by nucleolytic and chemical probing of complexes of unique DNA sequences.
    Cell. 1981 Mar;23(3):721-9 PMID: 6261954
  11. In vivo correlation between DNA supercoiling and transcription.
    Gene. 1981 Mar;13(2):173-84 PMID: 6263758
  12. DNA topoisomerases.
    Annu Rev Biochem. 1981;50:879-910 PMID: 6267993
  13. Mechanism of action of nalidixic acid: purification of Escherichia coli nalA gene product and its relationship to DNA gyrase and a novel nicking-closing enzyme.
    Proc Natl Acad Sci U S A. 1977 Nov;74(11):4767-71 PMID: 200930
  14. Nalidixic acid resistance: a second genetic character involved in DNA gyrase activity.
    Proc Natl Acad Sci U S A. 1977 Nov;74(11):4772-6 PMID: 337300
  15. DNA-DNA gyrase complex: the wrapping of the DNA duplex outside the enzyme.
    Cell. 1978 Nov;15(3):979-84 PMID: 153201
  16. Nucleotide sequence of the origin of replication of the Escherichia coli K-12 chromosome.
    Proc Natl Acad Sci U S A. 1979 Feb;76(2):580-4 PMID: 370833
  17. Site-specific cleavage of DNA by E. coli DNA gyrase.
    Cell. 1979 May;17(1):175-84 PMID: 378403
  18. T4 DNA topoisomerase: a new ATP-dependent enzyme essential for initiation of T4 bacteriophage DNA replication.
    Nature. 1979 Oct 11;281(5731):456-61 PMID: 226889
  19. DNA gyrase: affinity chromatography on novobiocin-Sepharose and catalytic properties.
    Nucleic Acids Res. 1981 Aug 11;9(15):3589-603 PMID: 6269086
  20. A solid-phase immunofluorescence assay (SIFA) for screening antigen-specific hybridomas.
    J Immunol Methods. 1981;46(1):41-6 PMID: 6169770
  21. Site-specific interaction of DNA gyrase with DNA.
    Proc Natl Acad Sci U S A. 1981 Jul;78(7):4165-9 PMID: 6270661
  22. Promoters in the E. coli replication origin.
    Nature. 1981 Nov 26;294(5839):376-8 PMID: 7031477
  23. Differential effects of antibiotics inhibiting gyrase.
    J Bacteriol. 1982 Jan;149(1):92-8 PMID: 6274849
  24. Enzymatic replication of the origin of the Escherichia coli chromosome.
    Proc Natl Acad Sci U S A. 1981 Dec;78(12):7370-4 PMID: 6278471
  25. Bacillus subtilis DNA gyrase: purification of subunits and reconstitution of supercoiling activity.
    J Bacteriol. 1982 Jul;151(1):524-7 PMID: 6282812
  26. Binding of the origin of replication of Escherichia coli to the outer membrane.
    Cell. 1982 Oct;30(3):915-23 PMID: 6754093
  27. Purification of ribonuclease H as a factor required for initiation of in vitro Co1E1 DNA replication.
    Nucleic Acids Res. 1982 Oct 11;10(19):5949-65 PMID: 6292861
  28. The binding of gyrase to DNA: analysis by retention by nitrocellulose filters.
    Nucleic Acids Res. 1982 Nov 11;10(21):6833-47 PMID: 6294616
  29. Chromosomal replication origin from the marine bacterium Vibrio harveyi functions in Escherichia coli: oriC consensus sequence.
    Proc Natl Acad Sci U S A. 1983 Mar;80(5):1164-8 PMID: 6338499
  30. Gyrase . DNA complexes visualized as looped structures by electron microscopy.
    J Biol Chem. 1983 Apr 10;258(7):4612-7 PMID: 6300092
  31. Localization and functional analysis of transposon mutations in regulatory genes of the TOL catabolic pathway.
    J Bacteriol. 1983 May;154(2):676-85 PMID: 6188746
  32. Positively supercoiled plasmid DNA is produced by treatment of Escherichia coli with DNA gyrase inhibitors.
    Nucleic Acids Res. 1983 May 25;11(10):2999-3017 PMID: 6304617
  33. Electrophoretic transfer of proteins from polyacrylamide gels to nitrocellulose sheets: procedure and some applications.
    Proc Natl Acad Sci U S A. 1979 Sep;76(9):4350-4 PMID: 388439
Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
0305-1048
Published
1984-01-25
Pages
901-14
Language
English
Region
England
NLM ID
0411011
PMCID
PMC318544
Subset
IM
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