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PMID: 4562753 Published · ppublish English Journal Article

Is there a discriminator site in transfer RNA?

Crothers DM, Seno T, Söll G

Abstract

We determined the nature of the fourth nucleotide from the 3'-end of several Escherichia coli tRNAs, and tabulated these results with the same data for all known tRNA sequences. We find a striking constancy of the fourth nucleotide in tRNAs specific for a given amino acid. Furthermore, tRNAs specific for chemically related amino acids are very likely to have the same nucleotide at the fourth position. One possible explanation for these regularities is the "discriminator" hypothesis: The code by which tRNA is recognized by its cognate aminoacyl-tRNA synthetase is logically hierarchical, with the fourth nucleotide serving as a primary "discriminator" site to subdivide the tRNAs into groups for recognition purposes. Each such group could have its own recognition code, or could be further subdivided by a secondary discriminator site. According to this hypothesis, chemically similar amino acids have the same discriminator nucleotide because they evolved from a single set of related amino acids indistinguishable to a primitive system. There are other possible explanations for the observed regularities at the fourth nucleotide. For example, it is conceivable that the position is used for a direct physical interaction with the amino acid in the charging process, and chemically similar amino acids naturally select the same nucleotide. Further experiments can be expected to clarify this question.

MeSH Terms
Acylation Amino Acids/analysis Amino Acyl-tRNA Synthetases/metabolism Animals Base Sequence Binding Sites Chromatography, DEAE-Cellulose Escherichia coli/analysis,enzymology,metabolism Genetic Code Liver/analysis Lysine/metabolism Phosphorus Isotopes RNA, Transfer/analysis Rats Saccharomyces cerevisiae/analysis Salmonella/analysis Threonine/metabolism Tritium
Chemicals
Amino Acids Phosphorus Isotopes Tritium Threonine RNA, Transfer Amino Acyl-tRNA Synthetases Lysine
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Crothers D M
Seno T
Söll G
References (47)
47 references, click to expand
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Article Info
Journal
Proceedings of the National Academy of Sciences of the United States of America
Abbr.
Proc Natl Acad Sci U S A
ISSN
0027-8424
Published
1972-10-00
Pages
3063-7
Language
English
Region
United States
NLM ID
7505876
PMCID
PMC389707
Subset
IM
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