Home LiteratureArticle Details
PMID: 3908095 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Structural details of the binding of guanosine diphosphate to elongation factor Tu from E. coli as studied by X-ray crystallography.

The EMBO journal ·Vol. 4 ·No. 9 ·1985-09-00 ·Pages 2385-8

la Cour TF, Nyborg J, Thirup S, Clark BF

Abstract

Structural details of the guanosine diphosphate binding to a modified form of elongation factor Tu from Escherichia coli, resulting from X-ray crystallographic studies, are reported. The protein elements that take part in the nucleotide binding are located in four loops connecting beta-strands with alpha-helices. These loops correspond to regions in primary sequences which show a high degree of homology when compared with other prokaryotic and eukaryotic elongation factors and initiation factor 2.

MeSH Terms
Escherichia coli/genetics,metabolism Guanine Nucleotides/metabolism Guanosine Diphosphate/metabolism Models, Molecular Nucleic Acid Conformation Peptide Elongation Factor Tu/metabolism Protein Binding Protein Conformation X-Ray Diffraction
Chemicals
Guanine Nucleotides Guanosine Diphosphate Peptide Elongation Factor Tu
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
la Cour T F
Nyborg J
Thirup S
Clark B F
References (31)
31 references, click to expand
  1. The alpha-helix dipole and the properties of proteins.
    Nature. 1978 Jun 8;273(5662):443-6 PMID: 661956
  2. Structural requirements of the GDP binding site of elongation factor Tu.
    FEBS Lett. 1977 Mar 15;75(1):241-3 PMID: 323049
  3. The preparation of thiophosphate analogs of GDP and their interaction with EF-Tu.
    FEBS Lett. 1979 Jun 15;102(2):269-72 PMID: 456606
  4. Interaction of Escherichia coli EF-Tu.GTP and EF-Tu.GDP with analogues of the 3' terminus of aminoacyl-tRNA.
    Eur J Biochem. 1980 Apr;105(2):315-20 PMID: 6991255
  5. The complete amino-acid sequence of elongation factor Tu from Escherichia coli.
    Eur J Biochem. 1980 Jul;108(2):507-26 PMID: 6997043
  6. Guanine nucleotide-binding and autophosphorylating activities associated with the p21src protein of Harvey murine sarcoma virus.
    Nature. 1980 Oct 23;287(5784):686-91 PMID: 6253810
  7. X-ray determination of the GDP-binding site of Escherichia coli elongation factor Tu by substitution with ppGpp.
    FEBS Lett. 1981 Apr 6;126(1):120-2 PMID: 7016581
  8. Structural features of the GDP binding site of elongation factor Tu from Escherichia coli as determined by x-ray diffraction.
    FEBS Lett. 1981 Jun 29;129(1):177-9 PMID: 7023989
  9. EPR studies of the Mn(II) complex with elongation factor Tu and GDP Identification of oxygen ligands to Mn(II) by observation of 17O superhyperfine coupling.
    J Biol Chem. 1981 Nov 10;256(21):10774-7 PMID: 6270130
  10. Spectroscopic studies of the nucleotide binding site of elongation factor Tu from Escherichia coli. An approach to characterizing the elementary steps of the elongation cycle of protein biosynthesis.
    Biochemistry. 1981 Oct 13;20(21):6265-72 PMID: 7030387
  11. Electron paramagnetic resonance studies of MN(II) complexes with myosin subfragment 1 and oxygen 17-labeled ligands.
    J Biol Chem. 1982 Mar 25;257(6):3068-72 PMID: 6277924
  12. The primary structure of elongation factor G from Escherichia coli. A complete amino acid sequence.
    FEBS Lett. 1982 Mar 8;139(1):130-5 PMID: 7042386
  13. The structure of the EF-Tu . GDP . Me2+ complex.
    Eur J Biochem. 1982 May;124(1):109-15 PMID: 7200884
  14. Homology between human bladder carcinoma oncogene product and mitochondrial ATP-synthase.
    Nature. 1983 Jan 20;301(5897):262-4 PMID: 6296696
  15. Predicted nucleotide-binding properties of p21 protein and its cancer-associated variant.
    Nature. 1983 Apr 28;302(5911):842-4 PMID: 6843652
  16. Stereochemistry of the elongation factor Tu X GTP complex.
    Eur J Biochem. 1983 Sep 15;135(2):237-41 PMID: 6136409
  17. Nucleotide sequence of a Euglena gracilis chloroplast genome region coding for the elongation factor Tu; evidence for a spliced mRNA.
    Nucleic Acids Res. 1983 Sep 10;11(17):5877-92 PMID: 6310519
  18. Molecular cloning and sequence determination of the nuclear gene coding for mitochondrial elongation factor Tu of Saccharomyces cerevisiae.
    Proc Natl Acad Sci U S A. 1983 Oct;80(20):6192-6 PMID: 6353412
  19. Homologies in the primary structure of GTP-binding proteins: the nucleotide-binding site of EF-Tu and p21.
    EMBO J. 1984 Feb;3(2):339-41 PMID: 6609071
  20. The primary structure of elongation factor EF-1 alpha from the brine shrimp Artemia.
    EMBO J. 1984 May;3(5):1109-13 PMID: 6203745
  21. Modification of amino groups in EF-Tu.GTP and the ternary complex EF-Tu.GTP.valyl-tRNAVal.
    Eur J Biochem. 1984 Jun 15;141(3):483-7 PMID: 6430701
  22. Electron-paramagnetic-resonance studies of manganese(II) complexes with elongation factor Tu from Bacillus stearothermophilus. Observation of a GTP hydrolysis intermediate state complex.
    Eur J Biochem. 1984 Jun 15;141(3):591-7 PMID: 6086334
  23. Polypeptide chain elongation factor 1 alpha (EF-1 alpha) from yeast: nucleotide sequence of one of the two genes for EF-1 alpha from Saccharomyces cerevisiae.
    EMBO J. 1984 Aug;3(8):1825-30 PMID: 6383821
  24. Sequence of the initiation factor IF2 gene: unusual protein features and homologies with elongation factors.
    Proc Natl Acad Sci U S A. 1984 Dec;81(24):7787-91 PMID: 6096856
  25. Regional homology in GTP-binding proto-oncogene products and elongation factors.
    J Cyclic Nucleotide Protein Phosphor Res. 1983-1984;9(6):435-48 PMID: 6396323
  26. Phosphate-binding sequences in nucleotide-binding proteins.
    FEBS Lett. 1985 Jul 1;186(1):1-7 PMID: 2989003
  27. The reactions of the sulfhydryl groups on the elongation factors Tu and Ts.
    Arch Biochem Biophys. 1971 May;144(1):115-21 PMID: 4940596
  28. Studies on the polypeptide elongation factors form E. coli. VI. Characterization of sulfhydryl groups in EF-Tu and EF-Ts.
    J Biochem. 1974 Sep;76(3):523-34 PMID: 4612030
  29. Elongation factor T from Bacillus stearothermophilus and Escherichia coli. Purification and some properties of EF-Tu and EF-Ts from Bacillus stearothermophilus.
    Eur J Biochem. 1976 Feb 16;62(2):373-82 PMID: 767105
  30. Structural patterns in globular proteins.
    Nature. 1976 Jun 17;261(5561):552-8 PMID: 934293
  31. High resolution x-ray crystallographic analysis of a modified form of the elongation factor Tu: guanosine diphosphate complex.
    J Mol Biol. 1978 Nov 5;125(3):325-38 PMID: 366156
Article Info
Journal
The EMBO journal
Abbr.
EMBO J
ISSN
0261-4189
Published
1985-09-00
Pages
2385-8
Language
English
Region
England
NLM ID
8208664
PMCID
PMC554514
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com