Home LiteratureArticle Details
PMID: 38329424 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Comprehensive analysis of ALG3 in pan-cancer and validation of ALG3 as an onco-immunological biomarker in breast cancer.

Aging ·Vol. 16 ·No. 3 ·2024-00-07 ·Pages 2320-2339

Xue X, Feng Q, Hong X, Lin Z, Luo Y, Li Y, Yao G, Wang N, Chen L

Abstract

ALG3 has significant modulatory function in the process of tumor development. Yet how ALG3 involves in the advancement of different malignancies isn't fully understood. We performed a pan-cancer assessment on ALG3 utilizing datasets from The Cancer Genome Atlas (TCGA) and Genotype-Tissue Expression (GTEx) to examine its tumor-related roles across malignancies and its link to particular molecules and cells in the tumor microenvironment (TME). Furthermore, we focused on breast cancer to examine the influence of ALG3-mediated signaling pathways and intercellular interactions in the advancement of tumors. The biological effects of ALG3 were verified by breast cancer cells. Enhanced ALG3 expression was discovered to be substantially linked to patients' grim prognoses in a number of malignancies. Furthermore, the expression of ALG3 in the TME was linked to the infiltration of stromal and immune cells, and ALG3-related immune checkpoints, TMB, and MSI were also discovered. We also discovered that cancer patients having a high level of ALG3 exhibited a lower probability of benefiting from immunotherapy. Furthermore, our research found that KEGG enrichment, single-cell RNA and spatial sequencing analyses were effective in identifying key signaling pathways in ALG3-associated tumor growth. In vitro, knockdown of ALG3 could decrease the proliferation of breast cancer cells. In summary, our research offers a comprehensive insight into the advancement of tumors under the mediation of ALG3. ALG3 appears to be intimately associated with tumor development in the TME. ALG3 might be a viable treatment target for cancer therapy, particularly in the case of breast cancer.

Keywords
ALG3 TME biomarker breast cancer pan-cancer
MeSH Terms
Humans Female Breast Neoplasms/genetics Biomarkers Immunotherapy RNA Spatial Analysis Prognosis Tumor Microenvironment/genetics Mannosyltransferases
Chemicals
Biomarkers RNA ALG3 protein, human Mannosyltransferases
Authors & Affiliations
9 authors, click to expand affiliations / ORCID
Xue Xiaolei
Department of Pathology, Nanfang Hospital, Southern Medical University, Guangzhou, Guangdong 510515, P.R. China.
Feng Qiaoli
Breast Center, Department of General Surgery, Nanfang Hospital, Southern Medical University, Guangzhou, Guangdong 510515, P.R. China.
Hong Xi
Breast Center, Department of General Surgery, Nanfang Hospital, Southern Medical University, Guangzhou, Guangdong 510515, P.R. China.
Lin Zhousheng
Breast Center, Department of General Surgery, Nanfang Hospital, Southern Medical University, Guangzhou, Guangdong 510515, P.R. China.
Luo Yingrui
Basic Medical Academy, Cancer Research Institute, Southern Medical University, Guangzhou, Guangdong 510515, P.R. China.
Li Yingshi
Basic Medical Academy, Cancer Research Institute, Southern Medical University, Guangzhou, Guangdong 510515, P.R. China.
Yao Guangyu
Breast Center, Department of General Surgery, Nanfang Hospital, Southern Medical University, Guangzhou, Guangdong 510515, P.R. China.
Wang Nisha
Department of Biochemistry and Molecular Biology, School of Basic Medical Sciences, Southern Medical University, Guangzhou, Guangdong 510515, P.R. China.
Chen Lujia
Breast Center, Department of General Surgery, Nanfang Hospital, Southern Medical University, Guangzhou, Guangdong 510515, P.R. China.
References (30)
30 references, click to expand
  1. Molecular partners of hNOT/ALG3, the human counterpart of the Drosophila NOT and yeast ALG3 gene, suggest its involvement in distinct cellular processes relevant to congenital disorders of glycosylation, cancer, neurodegeneration and a variety of further pathologies.
    Hum Mol Genet. 2018 Jun 1;27(11):1858-1878 PMID: 29547901
  2. Successful treatment of intractable epilepsy with ketogenic diet therapy in twins with ALG3-CDG.
    Brain Dev. 2020 Aug;42(7):539-545 PMID: 32389449
  3. Pan-Cancer Molecular Biomarkers: A Paradigm Shift in Diagnostic Pathology.
    Surg Pathol Clin. 2021 Sep;14(3):507-516 PMID: 34373099
  4. Clinical significance of tumor-infiltrating lymphocytes in breast cancer.
    J Immunother Cancer. 2016 Oct 18;4:59 PMID: 27777769
  5. Cancer Therapy Guided by Mutation Tests: Current Status and Perspectives.
    Int J Mol Sci. 2021 Oct 10;22(20): PMID: 34681592
  6. Inhibition of ALG3 stimulates cancer cell immunogenic ferroptosis to potentiate immunotherapy.
    Cell Mol Life Sci. 2022 Jun 8;79(7):352 PMID: 35676564
  7. Pan-cancer analysis identifies ESM1 as a novel oncogene for esophageal cancer.
    Esophagus. 2021 Apr;18(2):326-338 PMID: 33175267
  8. Breast cancer stem cells: Biology and therapeutic implications.
    Int J Biochem Cell Biol. 2019 Feb;107:38-52 PMID: 30529656
  9. Pan-cancer analysis of ARID1A Alterations as Biomarkers for Immunotherapy Outcomes.
    J Cancer. 2020 Jan 1;11(4):776-780 PMID: 31949479
  10. Subgrouping breast cancer patients based on immune evasion mechanisms unravels a high involvement of transforming growth factor-beta and decoy receptor 3.
    PLoS One. 2018 Dec 4;13(12):e0207799 PMID: 30513096
  11. Targeting Gas6/TAM in cancer cells and tumor microenvironment.
    Mol Cancer. 2018 Jan 31;17(1):20 PMID: 29386018
  12. Pan-Cancer Landscape of Aberrant DNA Methylation across Human Tumors.
    Cell Rep. 2018 Oct 23;25(4):1066-1080.e8 PMID: 30355485
  13. A Pan-Cancer Analysis of the Oncogenic Role of Twinfilin Actin Binding Protein 1 in Human Tumors.
    Front Oncol. 2021 May 25;11:692136 PMID: 34113576
  14. Therapeutic landscape of metaplastic breast cancer.
    Cancer Treat Rev. 2019 Sep;79:101888 PMID: 31491663
  15. A Comprehensive Prognostic and Immune Analysis of SLC41A3 in Pan-Cancer.
    Front Oncol. 2021 Jan 14;10:586414 PMID: 33520701
  16. Pan-Cancer Analysis of the Prognostic and Immunological Role of HSF1: A Potential Target for Survival and Immunotherapy.
    Oxid Med Cell Longev. 2021 Jun 18;2021:5551036 PMID: 34239690
  17. High-mannose glycans are elevated during breast cancer progression.
    Mol Cell Proteomics. 2011 Jan;10(1):M110.002717 PMID: 21097542
  18. Significance of Tumor-Infiltrating Lymphocytes and the Expression of Topoisomerase IIα in the Prediction of the Clinical Outcome of Patients with Triple-Negative Breast Cancer after Taxane-Anthracycline-Based Neoadjuvant Chemotherapy.
    Chemotherapy. 2017;62(4):246-255 PMID: 28472798
  19. Aberrant mannosylation profile and FTX/miR-342/ALG3-axis contribute to development of drug resistance in acute myeloid leukemia.
    Cell Death Dis. 2018 Jun 7;9(6):688 PMID: 29880818
  20. Glycoprotein biosynthesis in the alg3 Saccharomyces cerevisiae mutant. II. Structure of novel Man6-10GlcNAc2 processing intermediates on secreted invertase.
    J Biol Chem. 1993 Jun 5;268(16):12104-15 PMID: 8505334
  21. ALG3 Is Activated by Heat Shock Factor 2 and Promotes Breast Cancer Growth.
    Med Sci Monit. 2018 May 25;24:3479-3487 PMID: 29799832
  22. Targeting Breast Cancer Stem Cells to Overcome Treatment Resistance.
    Molecules. 2018 Aug 30;23(9): PMID: 30200262
  23. Prognostic and Immunological Role of Gasdermin E in Pan-Cancer Analysis.
    Front Oncol. 2021 Jul 26;11:706266 PMID: 34381728
  24. Predictive Biomarkers for Immune Checkpoint Inhibitors in Metastatic Breast Cancer.
    Cancer Med. 2021 Jan;10(1):53-61 PMID: 33314633
  25. Identification of putative target genes for amplification within 11q13.2 and 3q27.1 in esophageal squamous cell carcinoma.
    Clin Transl Oncol. 2014 Jul;16(7):606-15 PMID: 24203761
  26. ALG3 contributes to the malignancy of non-small cell lung cancer and is negatively regulated by MiR-98-5p.
    Pathol Res Pract. 2020 Mar;216(3):152761 PMID: 31899049
  27. An integrated pan-cancer analysis of TFAP4 aberrations and the potential clinical implications for cancer immunity.
    J Cell Mol Med. 2021 Feb;25(4):2082-2097 PMID: 33373169
  28. Immunological Role and Prognostic Value of APBB1IP in Pan-Cancer Analysis.
    J Cancer. 2021 Jan 1;12(2):595-610 PMID: 33391455
  29. ALG gene expression and cell cycle progression.
    Biochim Biophys Acta. 1999 Jan 6;1426(2):359-72 PMID: 9878828
  30. Mechanisms of immune evasion in breast cancer.
    BMC Cancer. 2018 May 11;18(1):556 PMID: 29751789
Full Text / Full Text
PMC full text available locally, click to read

Loading full text...

Article Info
Journal
Aging
Abbr.
Aging (Albany NY)
ISSN
1945-4589
Published
2024-00-07
Epub
2024-00-07
Pages
2320-2339
Language
English
Region
United States
NLM ID
101508617
PMCID
PMC10911369
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com