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PMID: 3138422 Published · ppublish English Comparative Study Journal Article

The Alu family developed through successive waves of fixation closely connected with primate lineage history.

Journal of molecular evolution ·Vol. 27 ·No. 3 ·1988-00-00 ·Pages 194-202

Quentin Y

Abstract

A new method of analyzing phylogenetic relations among members of the sequence family is presented and applied to human Alu sequences upon which work has been published. This method, based upon a correspondence analysis, works with large samples and yields easily interpretable graphical representations. Results obtained argue in favor of a new evolutionary scheme for Alu sequences, implying successive waves of amplification/fixation closely connected to primate lineage history.

MeSH Terms
Animals Base Sequence Chromosome Deletion Genes Humans Molecular Sequence Data Phylogeny Primates/genetics Sequence Homology, Nucleic Acid Species Specificity
Authors & Affiliations
1 authors, click to expand affiliations / ORCID
Quentin Y
Laboratoire de Biométrie, Université Claude Bernard, Villeurbanne, France.
References (28)
28 references, click to expand
  1. Species-specific homogeneity of the primate Alu family of repeated DNA sequences.
    Nucleic Acids Res. 1983 Nov 11;11(21):7579-93 PMID: 6647031
  2. DNA methylation and the frequency of CpG in animal DNA.
    Nucleic Acids Res. 1980 Apr 11;8(7):1499-504 PMID: 6253938
  3. Existence of at least three distinct Alu subfamilies.
    J Mol Evol. 1987;26(3):180-6 PMID: 3129565
  4. Human 7SL RNA consists of a 140 nucleotide middle-repetitive sequence inserted in an alu sequence.
    Cell. 1982 May;29(1):195-202 PMID: 6179628
  5. Clustering and subfamily relationships of the Alu family in the human genome.
    Mol Biol Evol. 1987 Jan;4(1):19-29 PMID: 3128713
  6. Integration site preferences of the Alu family and similar repetitive DNA sequences.
    Nucleic Acids Res. 1985 Dec 20;13(24):8939-54 PMID: 3001654
  7. Insertion of an Alu SINE in the human homologue of the Mlvi-2 locus.
    Nucleic Acids Res. 1985 Dec 9;13(23):8379-87 PMID: 3001638
  8. Repeated sequences in DNA. Hundreds of thousands of copies of DNA sequences have been incorporated into the genomes of higher organisms.
    Science. 1968 Aug 9;161(3841):529-40 PMID: 4874239
  9. Alu sequences are processed 7SL RNA genes.
    Nature. 1984 Nov 8-14;312(5990):171-2 PMID: 6209580
  10. ACNUC: a nucleic acid sequence data base and analysis system.
    Nucleic Acids Res. 1984 Jan 11;12(1 Pt 1):121-7 PMID: 6694896
  11. Base sequence studies of 300 nucleotide renatured repeated human DNA clones.
    J Mol Biol. 1981 Sep 5;151(1):17-33 PMID: 6276559
  12. The Alu family of dispersed repetitive sequences.
    Science. 1982 Jun 4;216(4550):1065-70 PMID: 6281889
  13. A second major class of Alu family repeated DNA sequences in a primate genome.
    Nucleic Acids Res. 1983 Nov 11;11(21):7595-610 PMID: 6647032
  14. A ubiquitous family of repeated DNA sequences in the human genome.
    J Mol Biol. 1979 Aug 15;132(3):289-306 PMID: 533893
  15. The multiple origins of human Alu sequences.
    J Mol Evol. 1986;23(3):189-99 PMID: 3100811
  16. Recent insertion of an Alu sequence in the beta-globin gene cluster of the gorilla.
    J Mol Evol. 1987;25(4):288-91 PMID: 2822939
  17. Renaturation rate studies of a single family of interspersed repeated sequences in human deoxyribonucleic acid.
    Biochemistry. 1981 May 26;20(11):3003-10 PMID: 6788076
  18. Revision of consensus sequence of human Alu repeats--a review.
    Gene. 1987;53(1):1-10 PMID: 3596248
  19. System analysis and nucleic acid sequence banks.
    Biochimie. 1985 May;67(5):433-6 PMID: 4027278
  20. Nucleotide sequence and evolution of the orangutan epsilon globin gene region and surrounding Alu repeats.
    J Mol Evol. 1986;24(1-2):94-102 PMID: 3031321
  21. The GenBank genetic sequence databank.
    Nucleic Acids Res. 1986 Jan 10;14(1):1-4 PMID: 3945546
  22. Upstream sequences modulate the internal promoter of the human 7SL RNA gene.
    Nature. 1985 Nov 28-Dec 4;318(6044):371-4 PMID: 2415825
  23. Direct repeats flank three small nuclear RNA pseudogenes in the human genome.
    Cell. 1981 Oct;26(1 Pt 1):11-7 PMID: 6173130
  24. A monkey Alu sequence is flanked by 13-base pair direct repeats by an interrupted alpha-satellite DNA sequence.
    Proc Natl Acad Sci U S A. 1982 Mar;79(5):1497-500 PMID: 6280186
  25. Short interspersed repetitive DNA elements in eucaryotes: transposable DNA elements generated by reverse transcription of RNA pol III transcripts?
    Cell. 1981 Oct;26(2 Pt 2):141-2 PMID: 6277493
  26. Identification of common molecular subsequences.
    J Mol Biol. 1981 Mar 25;147(1):195-7 PMID: 7265238
  27. Evolution of Alu family repeats since the divergence of human and chimpanzee.
    J Mol Evol. 1985;22(4):316-22 PMID: 3003370
  28. Ubiquitous, interspersed repeated sequences in mammalian genomes.
    Proc Natl Acad Sci U S A. 1980 Mar;77(3):1398-402 PMID: 6246492
Article Info
Journal
Journal of molecular evolution
Abbr.
J Mol Evol
ISSN
0022-2844
Published
1988-00-00
Pages
194-202
Language
English
Region
Germany
NLM ID
0360051
Subset
IM
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